메뉴 건너뛰기




Volumn 105, Issue 15, 2008, Pages 5833-5838

Cassandra retrotransposons carry independently transcribed 5S RNA

Author keywords

Genome evolution; Pol III; Transcription; Transposable element

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; RIBOSOME RNA; RNA 5S;

EID: 44449149783     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0709698105     Document Type: Article
Times cited : (120)

References (72)
  • 1
    • 23844543047 scopus 로고    scopus 로고
    • LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model
    • Vitte C, Panaud O (2005) LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model. Cytogenet Genome Res 110:91-107.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 91-107
    • Vitte, C.1    Panaud, O.2
  • 2
    • 34547491170 scopus 로고    scopus 로고
    • A GeneTrek analysis of the maize genome
    • Liu R, et al. (2007) A GeneTrek analysis of the maize genome. Proc Natl Acad Sci USA 104:11844-11849.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 11844-11849
    • Liu, R.1
  • 3
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker T, et al. (2007) A unified classification system for eukaryotic transposable elements. Nat Rev Genet 8:973-982.
    • (2007) Nat Rev Genet , vol.8 , pp. 973-982
    • Wicker, T.1
  • 5
    • 33845190150 scopus 로고    scopus 로고
    • Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
    • Sabot F, Schulman AH (2006) Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome. Heredity 97:381-388.
    • (2006) Heredity , vol.97 , pp. 381-388
    • Sabot, F.1    Schulman, A.H.2
  • 6
    • 33846967089 scopus 로고    scopus 로고
    • Life without GAG: The BARE-2 retrotransposon as a parasite's parasite
    • Tanskanen JA, Sabot F, Vicient C, Schulman AH (2006) Life without GAG: The BARE-2 retrotransposon as a parasite's parasite. Gene 390:166-174.
    • (2006) Gene , vol.390 , pp. 166-174
    • Tanskanen, J.A.1    Sabot, F.2    Vicient, C.3    Schulman, A.H.4
  • 7
    • 33749640324 scopus 로고    scopus 로고
    • Morgane, a new LTR retrotransposon group, and its subfamilies in wheats
    • Sabot F, Sourdille P, Chantret N, Bernard M (2006) Morgane, a new LTR retrotransposon group, and its subfamilies in wheats. Genetica 128:439-447.
    • (2006) Genetica , vol.128 , pp. 439-447
    • Sabot, F.1    Sourdille, P.2    Chantret, N.3    Bernard, M.4
  • 8
    • 1942421723 scopus 로고    scopus 로고
    • LARD retroelements: Conserved, non-autonomous components of barley and related genomes
    • Kalendar R, et al. (2004) LARD retroelements: Conserved, non-autonomous components of barley and related genomes. Genetics 166:1437-1450.
    • (2004) Genetics , vol.166 , pp. 1437-1450
    • Kalendar, R.1
  • 9
    • 33846794768 scopus 로고    scopus 로고
    • Characterization of terminal-repeat retrotransposon in miniature (TRIM) in Brassica relatives
    • Yang TJ, et al. (2007) Characterization of terminal-repeat retrotransposon in miniature (TRIM) in Brassica relatives. Theor Appl Genet 114:627-636.
    • (2007) Theor Appl Genet , vol.114 , pp. 627-636
    • Yang, T.J.1
  • 10
    • 0035923510 scopus 로고    scopus 로고
    • Witte CP, Le QH, Bureau T, Kumar A (2001) Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc Natl Acad Sci USA 98:13778-13783.
    • Witte CP, Le QH, Bureau T, Kumar A (2001) Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc Natl Acad Sci USA 98:13778-13783.
  • 11
    • 0346668134 scopus 로고    scopus 로고
    • Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome
    • Jiang N, Jordan IK, Wessler SR (2002) Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome. Plant Physiol 130:1697-1705.
    • (2002) Plant Physiol , vol.130 , pp. 1697-1705
    • Jiang, N.1    Jordan, I.K.2    Wessler, S.R.3
  • 12
    • 33645415035 scopus 로고    scopus 로고
    • TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports
    • Antonius-Klemola K, Kalendar R, Schulman AH (2006) TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports. Theor Appl Genet 112:999-1008.
    • (2006) Theor Appl Genet , vol.112 , pp. 999-1008
    • Antonius-Klemola, K.1    Kalendar, R.2    Schulman, A.H.3
  • 15
    • 0033852426 scopus 로고    scopus 로고
    • A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion
    • Shirasu K, Schulman AH, Lahaye T, Schulze-Lefert P (2000) A contiguous 66 kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res 10:908-915.
    • (2000) Genome Res , vol.10 , pp. 908-915
    • Shirasu, K.1    Schulman, A.H.2    Lahaye, T.3    Schulze-Lefert, P.4
  • 16
    • 0013630297 scopus 로고    scopus 로고
    • Nested retrotransposons in the intergenic regions of the maize genome
    • SanMiguel P, et al. (1996) Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768.
    • (1996) Science , vol.274 , pp. 765-768
    • SanMiguel, P.1
  • 17
    • 0042348136 scopus 로고    scopus 로고
    • In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 5S rRNA genes
    • Cloix C, et al. (2003) In vitro analysis of the sequences required for transcription of the Arabidopsis thaliana 5S rRNA genes. Plant J 35:251-261.
    • (2003) Plant J , vol.35 , pp. 251-261
    • Cloix, C.1
  • 18
    • 0032170495 scopus 로고    scopus 로고
    • High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated CAP trapper
    • Seki M, et al. (1998) High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated CAP trapper. Plant J 15:707-720.
    • (1998) Plant J , vol.15 , pp. 707-720
    • Seki, M.1
  • 19
    • 85045496218 scopus 로고
    • A lock-docking oligo(dT) primer for 5′ and 3′ RACE PCR
    • Borson ND, Salo WL, Drewes LR (1992) A lock-docking oligo(dT) primer for 5′ and 3′ RACE PCR. PCR Methods Appl 2:144-148.
    • (1992) PCR Methods Appl , vol.2 , pp. 144-148
    • Borson, N.D.1    Salo, W.L.2    Drewes, L.R.3
  • 20
    • 0020841082 scopus 로고
    • Purified RNA polymerase III accurately and efficiently terminates transcription of 5S RNA genes
    • Cozzarelli NR, et al. (1983) Purified RNA polymerase III accurately and efficiently terminates transcription of 5S RNA genes. Cell 34:829-835.
    • (1983) Cell , vol.34 , pp. 829-835
    • Cozzarelli, N.R.1
  • 21
    • 35248877550 scopus 로고    scopus 로고
    • Low abundant spacer 5S rRNA transcripts are frequently polyadenylated in Nicotiana
    • Fulnecek J, Kovarik A (2007) Low abundant spacer 5S rRNA transcripts are frequently polyadenylated in Nicotiana. Mol Genet Gen 278:565-573.
    • (2007) Mol Genet Gen , vol.278 , pp. 565-573
    • Fulnecek, J.1    Kovarik, A.2
  • 22
    • 27244444905 scopus 로고    scopus 로고
    • Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures
    • Loke JC, et al. (2005) Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures. Plant Physiol 138:1457-1468.
    • (2005) Plant Physiol , vol.138 , pp. 1457-1468
    • Loke, J.C.1
  • 23
    • 19544374354 scopus 로고    scopus 로고
    • Predicting a set of minimal free energy RNA secondary structures common to two sequences
    • Mathews DH (2005) Predicting a set of minimal free energy RNA secondary structures common to two sequences. Bioinformatics 21:2246-2253.
    • (2005) Bioinformatics , vol.21 , pp. 2246-2253
    • Mathews, D.H.1
  • 24
    • 2442626706 scopus 로고    scopus 로고
    • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
    • Mathews DH, et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci USA 101:7287-7292.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7287-7292
    • Mathews, D.H.1
  • 25
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 26
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu Y-X, Li W-H (1993) Statistical tests of neutrality of mutations. Genetics 133:693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.-X.1    Li, W.-H.2
  • 27
    • 0036375092 scopus 로고    scopus 로고
    • RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene
    • Peleg O, et al. (2002) RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene. AIDS Res Hum Retroviruses 18:867-878.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 867-878
    • Peleg, O.1
  • 28
    • 0242349119 scopus 로고    scopus 로고
    • Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure
    • Peleg O, Trifonov EN, Bolshoy A (2003) Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure. Nucleic Acids Res 31:4192-4200.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4192-4200
    • Peleg, O.1    Trifonov, E.N.2    Bolshoy, A.3
  • 29
    • 34548163098 scopus 로고    scopus 로고
    • IRAP and REMAP for retrotransposon-based genotyping and fingerprinting
    • Kalendar R, Schulman A (2006) IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nat Protoc 1:2478-2484.
    • (2006) Nat Protoc , vol.1 , pp. 2478-2484
    • Kalendar, R.1    Schulman, A.2
  • 30
    • 2542424855 scopus 로고    scopus 로고
    • The application of LTR retrotransposons as molecular markers in plants
    • Schulman AH, Flavell AJ, Ellis THN (2004) The application of LTR retrotransposons as molecular markers in plants. Methods Mol Biol 260:145-173.
    • (2004) Methods Mol Biol , vol.260 , pp. 145-173
    • Schulman, A.H.1    Flavell, A.J.2    Ellis, T.H.N.3
  • 31
    • 0032608690 scopus 로고    scopus 로고
    • Substrate recognition by retroviral integrases
    • Katzman M, Katz RA (1999) Substrate recognition by retroviral integrases. Adv Virus Res 52:371-395.
    • (1999) Adv Virus Res , vol.52 , pp. 371-395
    • Katzman, M.1    Katz, R.A.2
  • 32
    • 0028676173 scopus 로고
    • The molecular diversity of the 5s rRNA gene in barley (Hordeum vulgare)
    • Baum BR, Johnson DA (1994) The molecular diversity of the 5s rRNA gene in barley (Hordeum vulgare). Genome 37:992-998.
    • (1994) Genome , vol.37 , pp. 992-998
    • Baum, B.R.1    Johnson, D.A.2
  • 33
    • 0033625249 scopus 로고    scopus 로고
    • Analysis of 5S rDNA arrays in Arabidopsis thaliana: Physical mapping and chromosome-specific polymorphisms
    • Cloix C, et al. (2000)Analysis of 5S rDNA arrays in Arabidopsis thaliana: physical mapping and chromosome-specific polymorphisms Genome Res 10:679-690.
    • (2000) Genome Res , vol.10 , pp. 679-690
    • Cloix, C.1
  • 34
    • 0041419305 scopus 로고    scopus 로고
    • Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome
    • Miyao A, et al. (2003) Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome. Plant Cell 15:1771-1780.
    • (2003) Plant Cell , vol.15 , pp. 1771-1780
    • Miyao, A.1
  • 35
    • 0035252353 scopus 로고    scopus 로고
    • Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants
    • Pryer KM, et al. (2001) Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants. Nature 409:618-622.
    • (2001) Nature , vol.409 , pp. 618-622
    • Pryer, K.M.1
  • 36
    • 33344476794 scopus 로고    scopus 로고
    • Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA
    • Kadaba S, Wang X, Anderson JT (2006) Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA. RNA 12:508-521.
    • (2006) RNA , vol.12 , pp. 508-521
    • Kadaba, S.1    Wang, X.2    Anderson, J.T.3
  • 37
    • 34447647842 scopus 로고    scopus 로고
    • Useful 'junk': Alu RNAs in the human transcriptome
    • Häsler J, Samuelsson T, Strub K (2007) Useful 'junk': Alu RNAs in the human transcriptome. Cell Mol Life Sci 64:1793-1800.
    • (2007) Cell Mol Life Sci , vol.64 , pp. 1793-1800
    • Häsler, J.1    Samuelsson, T.2    Strub, K.3
  • 38
    • 0035042431 scopus 로고    scopus 로고
    • Transposable B2 SINE elements can provide mobile RNA polymerase II promoters
    • Ferrigno O, et al. (2001) Transposable B2 SINE elements can provide mobile RNA polymerase II promoters. Nat Genet 28:77-81.
    • (2001) Nat Genet , vol.28 , pp. 77-81
    • Ferrigno, O.1
  • 39
    • 0038709269 scopus 로고    scopus 로고
    • A novel class of SINE elements derived from 5S rRNA
    • Kapitonov VV, Jurka J (2003) A novel class of SINE elements derived from 5S rRNA. Mol Biol Evol 20:694-702.
    • (2003) Mol Biol Evol , vol.20 , pp. 694-702
    • Kapitonov, V.V.1    Jurka, J.2
  • 40
    • 17044401340 scopus 로고    scopus 로고
    • Evolution of a large ribosomal RNA multigene family in filamentous fungi: Birth and death of a concerted evolution paradigm
    • Rooney AP, Ward TJ (2005) Evolution of a large ribosomal RNA multigene family in filamentous fungi: Birth and death of a concerted evolution paradigm. Proc Natl Acad Sci USA 102:5084-5089.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5084-5089
    • Rooney, A.P.1    Ward, T.J.2
  • 41
    • 0025063806 scopus 로고
    • DNA methylation inhibits transcription by RNA polymerase III of a tRNA gene, but not of a 5S rRNA gene
    • Besser D, et al. (1990) DNA methylation inhibits transcription by RNA polymerase III of a tRNA gene, but not of a 5S rRNA gene. FEBS Lett 269:358-362.
    • (1990) FEBS Lett , vol.269 , pp. 358-362
    • Besser, D.1
  • 42
    • 34548434404 scopus 로고    scopus 로고
    • Regulation of Arabidopsis thaliana 5S rRNA genes
    • Vaillant I, et al. (2007) Regulation of Arabidopsis thaliana 5S rRNA genes. Plant Cell Physiol 48:745-752.
    • (2007) Plant Cell Physiol , vol.48 , pp. 745-752
    • Vaillant, I.1
  • 43
    • 6944249031 scopus 로고    scopus 로고
    • Quantum speciation in Aegilops: Molecular cytogenetic evidence from rDNA cluster variability in natural populations
    • Raskina O, Belyayev A, Nevo E (2004) Quantum speciation in Aegilops: Molecular cytogenetic evidence from rDNA cluster variability in natural populations. Proc Natl Acad Sci USA 101:14818-14823.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 14818-14823
    • Raskina, O.1    Belyayev, A.2    Nevo, E.3
  • 44
    • 0033804272 scopus 로고    scopus 로고
    • Ribosomal DNAs: An exception to the conservation of gene order in rice genomes
    • Shishido R, Sano Y, Fukui K (2000) Ribosomal DNAs: An exception to the conservation of gene order in rice genomes. Mol Gen Genet 263:586-591.
    • (2000) Mol Gen Genet , vol.263 , pp. 586-591
    • Shishido, R.1    Sano, Y.2    Fukui, K.3
  • 45
    • 11144224315 scopus 로고    scopus 로고
    • Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome
    • Pontes O, et al. (2004) Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proc Natl Acad Sci USA 101:18240-18245.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 18240-18245
    • Pontes, O.1
  • 46
    • 34948853236 scopus 로고    scopus 로고
    • Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana
    • Davison J, Tyagi A, Comai L (2007) Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana. BMC Plant Biol 7:44.
    • (2007) BMC Plant Biol , vol.7 , pp. 44
    • Davison, J.1    Tyagi, A.2    Comai, L.3
  • 47
    • 33846438184 scopus 로고    scopus 로고
    • Ribosomal DNA locus evolution in Nemesia: Transposition rather than structural rearrangement as the key mechanism?
    • Datson PM, Murray BG (2006) Ribosomal DNA locus evolution in Nemesia: Transposition rather than structural rearrangement as the key mechanism? Chrom Res 14:845-857.
    • (2006) Chrom Res , vol.14 , pp. 845-857
    • Datson, P.M.1    Murray, B.G.2
  • 48
    • 0039174046 scopus 로고    scopus 로고
    • Zimmer EA, et al. (1980) Rapid duplication and loss of genes coding for the chains of hemoglobin Proc Natl Acad Sci USA 77:2158-2162.
    • Zimmer EA, et al. (1980) Rapid duplication and loss of genes coding for the chains of hemoglobin Proc Natl Acad Sci USA 77:2158-2162.
  • 49
    • 33746658129 scopus 로고    scopus 로고
    • Matlik K, Redik K, Speek M (2006) L1 antisense promoter drives tissue-specific transcription of human genes. J Biomed Biotechnol 2006:71753.
    • Matlik K, Redik K, Speek M (2006) L1 antisense promoter drives tissue-specific transcription of human genes. J Biomed Biotechnol 2006:71753.
  • 51
    • 33845218958 scopus 로고    scopus 로고
    • Emergence of primate genes by retrotransposon-mediated sequence transduction
    • Xing J, et al. (2006) Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc Natl Acad Sci USA 103:17608-17613.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17608-17613
    • Xing, J.1
  • 52
    • 4944239027 scopus 로고    scopus 로고
    • Pack-MULE transposable elements mediate gene evolution in plants
    • Jiang N, et al. (2004) Pack-MULE transposable elements mediate gene evolution in plants. Nature 431:569-573.
    • (2004) Nature , vol.431 , pp. 569-573
    • Jiang, N.1
  • 53
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • Lai J, Li Y, Messing J, Dooner HK (2005) Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci USA 102:9068-9073.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 54
    • 25144488228 scopus 로고    scopus 로고
    • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
    • Morgante M, et al. (2005) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37:997-1002.
    • (2005) Nat Genet , vol.37 , pp. 997-1002
    • Morgante, M.1
  • 55
    • 3242879258 scopus 로고    scopus 로고
    • The taming of a transposon: V(D)J recombination and the immune system
    • Jones JM, Gellert M (2004) The taming of a transposon: V(D)J recombination and the immune system. Immunol Rev 200:233-248.
    • (2004) Immunol Rev , vol.200 , pp. 233-248
    • Jones, J.M.1    Gellert, M.2
  • 56
    • 22744445703 scopus 로고    scopus 로고
    • RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons
    • Kapitonov VV, Jurka J (2005) RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol 3:e181.
    • (2005) PLoS Biol , vol.3
    • Kapitonov, V.V.1    Jurka, J.2
  • 57
    • 15544363206 scopus 로고    scopus 로고
    • A genomic perspective on the chromodomain- containing retrotransposons: Chromoviruses
    • Kordiš D (2005) A genomic perspective on the chromodomain- containing retrotransposons: Chromoviruses. Gene 347:161-173.
    • (2005) Gene , vol.347 , pp. 161-173
    • Kordiš, D.1
  • 58
    • 0032718558 scopus 로고    scopus 로고
    • Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
    • Vicient CM, et al. (1999) Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell 11:1769-1784.
    • (1999) Plant Cell , vol.11 , pp. 1769-1784
    • Vicient, C.M.1
  • 59
    • 0027381917 scopus 로고
    • Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
    • Liu X, Gorovsky MA (1993) Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res 21:4954-4960.
    • (1993) Nucleic Acids Res , vol.21 , pp. 4954-4960
    • Liu, X.1    Gorovsky, M.A.2
  • 60
    • 0034612315 scopus 로고    scopus 로고
    • Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
    • Kalendar R, et al. (2000) Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci USA 97:6603-6607.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6603-6607
    • Kalendar, R.1
  • 62
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent WJ (2002) BLAT - The BLAST-like alignment tool. Genome Res 12:656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 63
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, et al. (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 64
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 65
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum evolution trees
    • Rzhetsky A, Nei M (1992) A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9:945-967.
    • (1992) Mol Biol Evol , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 66
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the boot-strap
    • Felsenstein J (1985) Confidence limits on phylogenies: An approach using the boot-strap. Evolution (Lawrence, Kans) 39:783-791.
    • (1985) Evolution (Lawrence, Kans) , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 67
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101:11030-11035.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 69
    • 0023375195 scopus 로고
    • The neighbor-joining method:Anewmethod for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method:Anewmethod for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 70
    • 34547781750 scopus 로고    scopus 로고
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
  • 71
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 72
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures
    • Hofacker IL, et al. (1994) Fast folding and comparison of RNA secondary structures. Monatshefte Chemie 125:167-188.
    • (1994) Monatshefte Chemie , vol.125 , pp. 167-188
    • Hofacker, I.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.