메뉴 건너뛰기




Volumn 26, Issue 8, 2004, Pages 833-843

Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME;

EID: 4344692339     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.20084     Document Type: Review
Times cited : (35)

References (114)
  • 1
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzas Rd
    • Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzas Rd. Science 269:496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3    Clayton, R.A.4    Kirkness, E.F.5
  • 6
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    • The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team. 2002. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420:563-573.
    • (2002) Nature , vol.420 , pp. 563-573
  • 7
    • 0034204044 scopus 로고    scopus 로고
    • Gene index analysis of the human genome estimates approximately 120,000 genes
    • Liang F, Holt I, Pertea G, Karamycheva S, Salzberg SL, et al. 2000. Gene index analysis of the human genome estimates approximately 120,000 genes. Nat Genet 25:239-240.
    • (2000) Nat Genet , vol.25 , pp. 239-240
    • Liang, F.1    Holt, I.2    Pertea, G.3    Karamycheva, S.4    Salzberg, S.L.5
  • 8
    • 0038349624 scopus 로고    scopus 로고
    • Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
    • Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, et al. 2003. Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Res 13:1290-1300.
    • (2003) Genome Res , vol.13 , pp. 1290-1300
    • Zavolan, M.1    Kondo, S.2    Schonbach, C.3    Adachi, J.4    Hume, D.A.5
  • 11
    • 0041926401 scopus 로고    scopus 로고
    • The human genome and the future of medicine
    • Mattick JS. 2003. The human genome and the future of medicine. Med J Aust 179:212-216.
    • (2003) Med J Aust , vol.179 , pp. 212-216
    • Mattick, J.S.1
  • 12
    • 0035195942 scopus 로고    scopus 로고
    • Non-coding RNAs: The architects of eukaryotic complexity
    • Mattick JS. 2001. Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep 2:986-991.
    • (2001) EMBO Rep , vol.2 , pp. 986-991
    • Mattick, J.S.1
  • 13
    • 0035656688 scopus 로고    scopus 로고
    • Non-coding RNA genes and the modern RNA world
    • Eddy SR. 2001. Non-coding RNA genes and the modern RNA world. Nat Rev Genet 2:919-929.
    • (2001) Nat Rev Genet , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 14
    • 0036262226 scopus 로고    scopus 로고
    • Beyond the proteome: Non-coding regulatory RNAs
    • reviews0005
    • Szymanski M, Barciszewski J. 2002. Beyond the proteome: non-coding regulatory RNAs. Genome Biol 3:reviews0005.
    • (2002) Genome Biol , vol.3
    • Szymanski, M.1    Barciszewski, J.2
  • 15
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the Brown Norway rat yields insights into mammalian evolution
    • Consortium RGSP. 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428:493-521.
    • (2004) Nature , vol.428 , pp. 493-521
  • 17
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • Consortium TCeS. 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012-2018.
    • (1998) Science , vol.282 , pp. 2012-2018
  • 18
    • 0037624063 scopus 로고    scopus 로고
    • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    • Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, et al. 2003. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301:376-379.
    • (2003) Science , vol.301 , pp. 376-379
    • Kikuchi, S.1    Satoh, K.2    Nagata, T.3    Kawagashira, N.4    Doi, K.5
  • 19
    • 0242300620 scopus 로고    scopus 로고
    • Empirical analysis of transcriptional activity in the Arabidopsis genome
    • Yamada K, Lim J, Dale JM, Chen H, Shinn P, et al. 2003, Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302:842-846.
    • (2003) Science , vol.302 , pp. 842-846
    • Yamada, K.1    Lim, J.2    Dale, J.M.3    Chen, H.4    Shinn, P.5
  • 22
    • 0038011500 scopus 로고    scopus 로고
    • Comparative analysis of apoptosis and inflammation genes of mice and humans
    • Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, et al. 2003. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res 13:1376-1388.
    • (2003) Genome Res , vol.13 , pp. 1376-1388
    • Reed, J.C.1    Doctor, K.2    Rojas, A.3    Zapata, J.M.4    Stehlik, C.5
  • 23
    • 0038414560 scopus 로고    scopus 로고
    • An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene
    • Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, et al. 2003. An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene. Nature 423:91-96.
    • (2003) Nature , vol.423 , pp. 91-96
    • Hirotsune, S.1    Yoshida, N.2    Chen, A.3    Garrett, L.4    Sugiyama, F.5
  • 24
    • 0036180936 scopus 로고    scopus 로고
    • Molecular fossils in the human genome: Identification and analysis of the pseudogenes in chromosomes 21 and 22
    • Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, et al. 2002. Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22. Genome Res 12:272-280.
    • (2002) Genome Res , vol.12 , pp. 272-280
    • Harrison, P.M.1    Hegyi, H.2    Balasubramanian, S.3    Luscombe, N.M.4    Bertone, P.5
  • 25
    • 1642473033 scopus 로고    scopus 로고
    • Comparative analysis of processed pseudogenes in the mouse and human genomes
    • Zhang Z, Carriero N, Gerstein M. 2004. Comparative analysis of processed pseudogenes in the mouse and human genomes. Trends Genet 20:62-67.
    • (2004) Trends Genet , vol.20 , pp. 62-67
    • Zhang, Z.1    Carriero, N.2    Gerstein, M.3
  • 26
  • 27
    • 9144252038 scopus 로고    scopus 로고
    • Complete sequencing and characterization of 21,243 full-length human cDNAs
    • Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, et al. 2004. Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet 36:40-45.
    • (2004) Nat Genet , vol.36 , pp. 40-45
    • Ota, T.1    Suzuki, Y.2    Nishikawa, T.3    Otsuki, T.4    Sugiyama, T.5
  • 28
    • 20244377471 scopus 로고    scopus 로고
    • Functional annotation of a full-length Arabidopsis cDNA collection
    • Seki M, Narusaka M, Kamiya A, Ishida J, Satou M, et al. 2002. Functional annotation of a full-length Arabidopsis cDNA collection. Science 296:141-145.
    • (2002) Science , vol.296 , pp. 141-145
    • Seki, M.1    Narusaka, M.2    Kamiya, A.3    Ishida, J.4    Satou, M.5
  • 29
    • 0035393343 scopus 로고    scopus 로고
    • Genome-wide detection of alternative splicing in expressed sequences of human genes
    • Modrek B, Resch A, Grasso C, Lee C. 2001. Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Res 29:2850-2859.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2850-2859
    • Modrek, B.1    Resch, A.2    Grasso, C.3    Lee, C.4
  • 30
    • 0037705467 scopus 로고    scopus 로고
    • Conservation of human alternative splice events in mouse
    • Thanaraj TA, Clark F, Muilu J. 2003. Conservation of human alternative splice events in mouse. Nucleic Acids Res 31:2544-2552.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2544-2552
    • Thanaraj, T.A.1    Clark, F.2    Muilu, J.3
  • 31
    • 18744390284 scopus 로고    scopus 로고
    • Selecting for functional alternative splices in ESTs
    • Kan Z, States D, Gish W. 2002. Selecting for functional alternative splices in ESTs. Genome Res 12:1837-1845.
    • (2002) Genome Res , vol.12 , pp. 1837-1845
    • Kan, Z.1    States, D.2    Gish, W.3
  • 32
    • 0034653289 scopus 로고    scopus 로고
    • Species-specific regulation of alternative splicing in the C-terminal region of the p53 tumor suppressor gene
    • Laverdiere M, Beaudoin J, Lavigueur A. 2000. Species-specific regulation of alternative splicing in the C-terminal region of the p53 tumor suppressor gene. Nucleic Acids Res 28:1489-1497.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1489-1497
    • Laverdiere, M.1    Beaudoin, J.2    Lavigueur, A.3
  • 33
    • 0041760905 scopus 로고    scopus 로고
    • Species-specific splicing and expression of angiotensin converting enzyme
    • Tian XL, Paul M. 2003. Species-specific splicing and expression of angiotensin converting enzyme. Biochem Pharmacol 66:1037-1044.
    • (2003) Biochem Pharmacol , vol.66 , pp. 1037-1044
    • Tian, X.L.1    Paul, M.2
  • 34
    • 0033591040 scopus 로고    scopus 로고
    • Species-specific alternative splicing of transgenic RNA in the mammary glands of pigs, rabbits, and mice
    • Aigner B, Pambalk K, Reichart U, Besenfelder U, Bosze Z, et al. 1999. Species-specific alternative splicing of transgenic RNA in the mammary glands of pigs, rabbits, and mice. Biochem Biophys Res Commun 257:843-850.
    • (1999) Biochem Biophys Res Commun , vol.257 , pp. 843-850
    • Aigner, B.1    Pambalk, K.2    Reichart, U.3    Besenfelder, U.4    Bosze, Z.5
  • 35
    • 85041131924 scopus 로고
    • Antisense RNA control in bacteria, phages, and plasmids
    • Wagner EG, Simons RW. 1994. Antisense RNA control in bacteria, phages, and plasmids. Annu Rev Microbiol 48:713-742.
    • (1994) Annu Rev Microbiol , vol.48 , pp. 713-742
    • Wagner, E.G.1    Simons, R.W.2
  • 38
    • 0002636459 scopus 로고    scopus 로고
    • Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
    • RESEARCH0083
    • Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, et al. 2002. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol 3:RESEARCH0083.
    • (2002) Genome Biol , vol.3
    • Misra, S.1    Crosby, M.A.2    Mungall, C.J.3    Matthews, B.B.4    Campbell, K.S.5
  • 40
    • 12244275645 scopus 로고    scopus 로고
    • Widespread occurrence of antisense transcription in the human genome
    • Yelin R, Dahary D, Sorek R, Levanon EY, Goldstein O, et al. 2003. Widespread occurrence of antisense transcription in the human genome. Nat Biotechnol 21:379-386.
    • (2003) Nat Biotechnol , vol.21 , pp. 379-386
    • Yelin, R.1    Dahary, D.2    Sorek, R.3    Levanon, E.Y.4    Goldstein, O.5
  • 41
    • 0037673656 scopus 로고    scopus 로고
    • Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
    • Kiyosawa H, Yamanaka I, Osato N, Kondo S, Hayashizaki Y. 2003. Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res 13:1324-1334.
    • (2003) Genome Res , vol.13 , pp. 1324-1334
    • Kiyosawa, H.1    Yamanaka, I.2    Osato, N.3    Kondo, S.4    Hayashizaki, Y.5
  • 42
    • 0038688072 scopus 로고    scopus 로고
    • Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection
    • Numata K, Kanai A, Saito R, Kondo S, Adachi J, et al. 2003. Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection. Genome Res 13:1301-1306.
    • (2003) Genome Res , vol.13 , pp. 1301-1306
    • Numata, K.1    Kanai, A.2    Saito, R.3    Kondo, S.4    Adachi, J.5
  • 44
    • 0033794748 scopus 로고    scopus 로고
    • The sense of naturally transcribed antisense RNAs in plants
    • Terryn N, Rouze P. 2000. The sense of naturally transcribed antisense RNAs in plants. Trends Plant Sci 5:394-396.
    • (2000) Trends Plant Sci , vol.5 , pp. 394-396
    • Terryn, N.1    Rouze, P.2
  • 45
    • 0025721986 scopus 로고
    • Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA
    • Munroe SH, Lazar MA. 1991. Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA. J Biol Chem 266:22083-22086.
    • (1991) J Biol Chem , vol.266 , pp. 22083-22086
    • Munroe, S.H.1    Lazar, M.A.2
  • 46
    • 0035880376 scopus 로고    scopus 로고
    • Phylogenetic conservation ot the makorin-2 gene, encoding a multiple zinc-finger protein, antisense to the RAF1 proto-oncogene
    • Gray TA, Azama K, Whitmore K, Min A, Abe S, et al. 2001. Phylogenetic conservation ot the makorin-2 gene, encoding a multiple zinc-finger protein, antisense to the RAF1 proto-oncogene. Genomics 77:119-126.
    • (2001) Genomics , vol.77 , pp. 119-126
    • Gray, T.A.1    Azama, K.2    Whitmore, K.3    Min, A.4    Abe, S.5
  • 47
    • 0035839126 scopus 로고    scopus 로고
    • Epigenetic reprogramming in mammalian development
    • Reik W, Dean W, Walter J. 2001. Epigenetic reprogramming in mammalian development. Science 293:1089-1093.
    • (2001) Science , vol.293 , pp. 1089-1093
    • Reik, W.1    Dean, W.2    Walter, J.3
  • 48
    • 0035234557 scopus 로고    scopus 로고
    • Genomic imprinting: Parental influence on the genome
    • Reik W, Walter J. 2001. Genomic imprinting: parental influence on the genome. Nat Rev Genet 2:21-32.
    • (2001) Nat Rev Genet , vol.2 , pp. 21-32
    • Reik, W.1    Walter, J.2
  • 49
    • 0038011488 scopus 로고    scopus 로고
    • A comprehensive transcript map of the mouse Gnas imprinted complex
    • Holmes R, Williamson C, Peters J, Denny P, Wells C. 2003. A comprehensive transcript map of the mouse Gnas imprinted complex. Genome Res 13:1410-1415.
    • (2003) Genome Res , vol.13 , pp. 1410-1415
    • Holmes, R.1    Williamson, C.2    Peters, J.3    Denny, P.4    Wells, C.5
  • 50
    • 0036146828 scopus 로고    scopus 로고
    • Alternative noncoding splice variants of Nespas, an imprinted gene antisense to Nesp in the Gnas imprinting cluster
    • Williamson CM, Skinner JA, Kelsey G, Peters J. 2002. Alternative noncoding splice variants of Nespas, an imprinted gene antisense to Nesp in the Gnas imprinting cluster. Mamm Genome 13:74-79.
    • (2002) Mamm Genome , vol.13 , pp. 74-79
    • Williamson, C.M.1    Skinner, J.A.2    Kelsey, G.3    Peters, J.4
  • 51
    • 0038419811 scopus 로고    scopus 로고
    • Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene
    • Seitz H, Youngson N, Lin SP, Dalbert S, Paulsen M, et al. 2003, Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene. Nat Genet 34:261-262.
    • (2003) Nat Genet , vol.34 , pp. 261-262
    • Seitz, H.1    Youngson, N.2    Lin, S.P.3    Dalbert, S.4    Paulsen, M.5
  • 52
    • 0038581890 scopus 로고    scopus 로고
    • Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
    • Tufarelli C, Stanley JA, Garrick D, Sharpe JA, Ayyub H, et al. 2003. Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat Genet 34:157-165.
    • (2003) Nat Genet , vol.34 , pp. 157-165
    • Tufarelli, C.1    Stanley, J.A.2    Garrick, D.3    Sharpe, J.A.4    Ayyub, H.5
  • 53
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S. 2001. Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 15:1637-1651.
    • (2001) Genes Dev , vol.15 , pp. 1637-1651
    • Wassarman, K.M.1    Repoila, F.2    Rosenow, C.3    Storz, G.4    Gottesman, S.5
  • 54
    • 0035954304 scopus 로고    scopus 로고
    • Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
    • Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, et al. 2001. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol 11:941-950.
    • (2001) Curr Biol , vol.11 , pp. 941-950
    • Argaman, L.1    Hershberg, R.2    Vogel, J.3    Bejerano, G.4    Wagner, E.G.5
  • 56
    • 0036275447 scopus 로고    scopus 로고
    • Getting started with yeast
    • Sherman F. 2002. Getting started with yeast. Methods Enzymol 350: 3-41.
    • (2002) Methods Enzymol , vol.350 , pp. 3-41
    • Sherman, F.1
  • 57
    • 0037423293 scopus 로고    scopus 로고
    • The fragile X syndrome protein FMRP associates with BC1 RNA and regulates the translation of specific mRNAs at synapses
    • Zalfa F, Giorgi M, Primerano B, Moro A, Di Penta A, et al. 2003. The fragile X syndrome protein FMRP associates with BC1 RNA and regulates the translation of specific mRNAs at synapses. Cell 112:317-327.
    • (2003) Cell , vol.112 , pp. 317-327
    • Zalfa, F.1    Giorgi, M.2    Primerano, B.3    Moro, A.4    Di Penta, A.5
  • 58
    • 0032479303 scopus 로고    scopus 로고
    • Identification of a novel bone morphogenetic protein-responsive gene that may function as a noncoding RNA
    • Takeda K, Ichijo H, Fujii M, Mochida Y, Saitoh M, et al. 1998. Identification of a novel bone morphogenetic protein-responsive gene that may function as a noncoding RNA. J Biol Chem 273:17079-17085.
    • (1998) J Biol Chem , vol.273 , pp. 17079-17085
    • Takeda, K.1    Ichijo, H.2    Fujii, M.3    Mochida, Y.4    Saitoh, M.5
  • 59
    • 0029975533 scopus 로고    scopus 로고
    • Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome
    • Sutherland HF, Wadey R, McKie JM, Taylor C, Atif U, et al. 1996. Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome. Am J Hum Genet 59:23-31.
    • (1996) Am J Hum Genet , vol.59 , pp. 23-31
    • Sutherland, H.F.1    Wadey, R.2    McKie, J.M.3    Taylor, C.4    Atif, U.5
  • 60
    • 0025809321 scopus 로고
    • Parental imprinting of the mouse H19 gene
    • Bartolomei MS, Zemel S, Tilghman SM. 1991. Parental imprinting of the mouse H19 gene. Nature 351:153-155.
    • (1991) Nature , vol.351 , pp. 153-155
    • Bartolomei, M.S.1    Zemel, S.2    Tilghman, S.M.3
  • 61
    • 0028124726 scopus 로고
    • Identification of a novel paternally expressed gene in the Prader-Willi syndrome region
    • Wevrick R, Kerns JA, Francke U. 1994. Identification of a novel paternally expressed gene in the Prader-Willi syndrome region. Hum Mol Genet 3:1877-1882.
    • (1994) Hum Mol Genet , vol.3 , pp. 1877-1882
    • Wevrick, R.1    Kerns, J.A.2    Francke, U.3
  • 62
    • 85047696885 scopus 로고    scopus 로고
    • Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes
    • Chan AS, Thorner PS, Squire JA, Zielenska M. 2002. Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes. Oncogene 21:3029-3037.
    • (2002) Oncogene , vol.21 , pp. 3029-3037
    • Chan, A.S.1    Thorner, P.S.2    Squire, J.A.3    Zielenska, M.4
  • 63
    • 0031568254 scopus 로고    scopus 로고
    • The human NTT gene: Identification of a novel 17-kb noncoding nuclear RNA expressed in activated CD4+ T cells
    • Liu AY, Torchia BS, Migeon BR, Siliciano RF. 1997. The human NTT gene: identification of a novel 17-kb noncoding nuclear RNA expressed in activated CD4+ T cells. Genomics 39:171-184.
    • (1997) Genomics , vol.39 , pp. 171-184
    • Liu, A.Y.1    Torchia, B.S.2    Migeon, B.R.3    Siliciano, R.F.4
  • 64
    • 0034866588 scopus 로고    scopus 로고
    • Identification of a new imprinted gene, Rian, on mouse chromosome 12 by fluorescent differential display screening
    • Hatada I, Morita S, Obata Y, Sotomaru Y, Shimoda M, et al. 2001. Identification of a new imprinted gene, Rian, on mouse chromosome 12 by fluorescent differential display screening. J Biochem (Tokyo) 130: 187-190.
    • (2001) J Biochem (Tokyo) , vol.130 , pp. 187-190
    • Hatada, I.1    Morita, S.2    Obata, Y.3    Sotomaru, Y.4    Shimoda, M.5
  • 65
    • 0023152084 scopus 로고
    • A mammalian mitochondrial RNA processing activity contains nucleus-encoded RNA
    • Chang DD, Clayton DA. 1987. A mammalian mitochondrial RNA processing activity contains nucleus-encoded RNA. Science 235:1178-1184.
    • (1987) Science , vol.235 , pp. 1178-1184
    • Chang, D.D.1    Clayton, D.A.2
  • 66
    • 0034640938 scopus 로고    scopus 로고
    • The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1)
    • Nemes JP, Benzow KA, Moseley ML, Ranum LP, Koob MD. 2000. The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1). Hum Mol Genet 9: 1543-1551.
    • (2000) Hum Mol Genet , vol.9 , pp. 1543-1551
    • Nemes, J.P.1    Benzow, K.A.2    Moseley, M.L.3    Ranum, L.P.4    Koob, M.D.5
  • 67
    • 0033515637 scopus 로고    scopus 로고
    • A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
    • Lanz RB, McKenna NJ, Onate SA, Albrecht U, Wong J, et al. 1999. A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell 97:17-27.
    • (1999) Cell , vol.97 , pp. 17-27
    • Lanz, R.B.1    McKenna, N.J.2    Onate, S.A.3    Albrecht, U.4    Wong, J.5
  • 68
    • 0032932528 scopus 로고    scopus 로고
    • Tsix, a gene antisense to Xist at the X-inactivation centre
    • Lee JT, Davidow LS, Warshawsky D. 1999. Tsix, a gene antisense to Xist at the X-inactivation centre. Nat Genet 21:400-404.
    • (1999) Nat Genet , vol.21 , pp. 400-404
    • Lee, J.T.1    Davidow, L.S.2    Warshawsky, D.3
  • 69
    • 85101729857 scopus 로고    scopus 로고
    • Noncoding RNA genes in dosage compensation and imprinting Tsix, a gene antisense to Xist at the X-inactivation centre
    • Kelley RL, Kuroda M, Lee JT, Davidow LS, Warshawsky D. 2000. Noncoding RNA genes in dosage compensation and imprinting Tsix, a gene antisense to Xist at the X-inactivation centre. Cell 103:9-12.
    • (2000) Cell , vol.103 , pp. 9-12
    • Kelley, R.L.1    Kuroda, M.2    Lee, J.T.3    Davidow, L.S.4    Warshawsky, D.5
  • 70
    • 0035934228 scopus 로고    scopus 로고
    • Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA
    • Tam W. 2001. Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA. Gene 274:157-167.
    • (2001) Gene , vol.274 , pp. 157-167
    • Tam, W.1
  • 71
  • 72
    • 0030586773 scopus 로고    scopus 로고
    • adapt33, a novel oxidant-inducible RNA from hamster HA-1 cells
    • Wang Y, Crawford DR, Davies KJ. 1996. adapt33, a novel oxidant-inducible RNA from hamster HA-1 cells. Arch Biochem Biophys 332: 255-260.
    • (1996) Arch Biochem Biophys , vol.332 , pp. 255-260
    • Wang, Y.1    Crawford, D.R.2    Davies, K.J.3
  • 73
    • 0037075032 scopus 로고    scopus 로고
    • The non-coding Air RNA is required for silencing autosomal imprinted genes
    • Sleutels F, Zwart R, Barlow DP. 2002. The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415:810-813.
    • (2002) Nature , vol.415 , pp. 810-813
    • Sleutels, F.1    Zwart, R.2    Barlow, D.P.3
  • 74
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz G. 2002. An expanding universe of noncoding RNAs. Science 296:1260-1263.
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 75
    • 0141867857 scopus 로고    scopus 로고
    • Challenging the dogma: The hidden layer of non-protein-coding RNAs in complex organisms
    • Mattick JS. 2003. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays 25:930-939.
    • (2003) Bioessays , vol.25 , pp. 930-939
    • Mattick, J.S.1
  • 76
    • 0035891288 scopus 로고    scopus 로고
    • 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
    • Nguyen VT, Kiss T, Michels AA, Bensaude O. 2001. 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature 414:322-325.
    • (2001) Nature , vol.414 , pp. 322-325
    • Nguyen, V.T.1    Kiss, T.2    Michels, A.A.3    Bensaude, O.4
  • 77
    • 0033535935 scopus 로고    scopus 로고
    • A new structure for the murine Xist gene and its relationship to chromosome choice/counting during X-chromosome inactivation
    • Hong YK, Ontiveros SD, Chen C, Strauss WM. 1999. A new structure for the murine Xist gene and its relationship to chromosome choice/ counting during X-chromosome inactivation. Proc Natl Acad Sci USA 96:6829-6834.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 6829-6834
    • Hong, Y.K.1    Ontiveros, S.D.2    Chen, C.3    Strauss, W.M.4
  • 78
    • 18344379866 scopus 로고    scopus 로고
    • Thioredoxin post-transcriptional regulation by H19 provides a new function to mRNA-like non-coding RNA
    • Lottin S, Vercoutter-Edouart AS, Adriaenssens E, Czeszak X, Lemoine J, et al. 2002. Thioredoxin post-transcriptional regulation by H19 provides a new function to mRNA-like non-coding RNA. Oncogene 21:1625-1631.
    • (2002) Oncogene , vol.21 , pp. 1625-1631
    • Lottin, S.1    Vercoutter-Edouart, A.S.2    Adriaenssens, E.3    Czeszak, X.4    Lemoine, J.5
  • 79
    • 0037133225 scopus 로고    scopus 로고
    • MicroRNAs: Hidden in the genome
    • Moss EG. 2002. MicroRNAs: hidden in the genome. Curr Biol 12:R138-R140.
    • (2002) Curr Biol , vol.12
    • Moss, E.G.1
  • 81
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. 2001. Identification of novel genes coding for small expressed RNAs. Science 294:853-858.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 83
    • 0036544755 scopus 로고    scopus 로고
    • Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
    • Lai EC. 2002. Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat Genet 30:363-364.
    • (2002) Nat Genet , vol.30 , pp. 363-364
    • Lai, E.C.1
  • 84
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
    • Llave C, Xie Z, Kasschau KD, Carrington JC. 2002. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297:2053-2056.
    • (2002) Science , vol.297 , pp. 2053-2056
    • Llave, C.1    Xie, Z.2    Kasschau, K.D.3    Carrington, J.C.4
  • 86
    • 0038708326 scopus 로고    scopus 로고
    • The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs
    • Abrahante JE, Daul AL, Li M, Volk ML, Tennessen JM, et al. 2003. Rougvie AE. The Caenorhabditis elegans hunchback-like gene lin-57/ hbl-1 controls developmental time and is regulated by microRNAs. Dev Cell 4:625-637.
    • (2003) Dev Cell , vol.4 , pp. 625-637
    • Abrahante, J.E.1    Daul, A.L.2    Li, M.3    Volk, M.L.4    Tennessen, J.M.5    Rougvie, A.E.6
  • 87
    • 0037693842 scopus 로고    scopus 로고
    • The C elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target
    • Lin SY, Johnson SM, Abraham M, Vella MC, Pasquinelli A, et al. 2003. The C elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target. Dev Cell 4:639-650.
    • (2003) Dev Cell , vol.4 , pp. 639-650
    • Lin, S.Y.1    Johnson, S.M.2    Abraham, M.3    Vella, M.C.4    Pasquinelli, A.5
  • 88
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time, and floral organ identity by a MicroRNA and its APETALA2-Like target genes
    • Aukerman MJ, Sakai H. 2003. Regulation of Flowering Time, and Floral Organ Identity by a MicroRNA and its APETALA2-Like Target Genes. Plant Cell 15:2730-2741.
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 89
    • 1642366133 scopus 로고    scopus 로고
    • A MicroRNA as a translational repressor of APETALA2 in arabidopsis flower development
    • Chen X. 2004. A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development. Science 303:2020-2025.
    • (2004) Science , vol.303 , pp. 2020-2025
    • Chen, X.1
  • 91
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis BP, Green RE, Brenner SE. 2003. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc Natl Acad Sci USA 100:189-192.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 92
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau NC, Lim LP, Weinstein EG, Bartel DP. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294:858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 94
    • 0034597777 scopus 로고    scopus 로고
    • Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
    • Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, et al. 2000. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 408:86-89.
    • (2000) Nature , vol.408 , pp. 86-89
    • Pasquinelli, A.E.1    Reinhart, B.J.2    Slack, F.3    Martindale, M.Q.4    Kuroda, M.I.5
  • 95
    • 0038247862 scopus 로고    scopus 로고
    • High intron sequence conservation across three mammalian orders suggests functional constraints
    • Hare MP, Palumbi SR. 2003. High intron sequence conservation across three mammalian orders suggests functional constraints. Mol Biol Evol 20:969-978.
    • (2003) Mol Biol Evol , vol.20 , pp. 969-978
    • Hare, M.P.1    Palumbi, S.R.2
  • 96
    • 0141596080 scopus 로고    scopus 로고
    • The dog genome: Survey sequencing and comparative analysis
    • Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, et al. 2003. The dog genome: survey sequencing and comparative analysis. Science 301:1898-1903.
    • (2003) Science , vol.301 , pp. 1898-1903
    • Kirkness, E.F.1    Bafna, V.2    Halpern, A.L.3    Levy, S.4    Remington, K.5
  • 97
    • 18744395183 scopus 로고    scopus 로고
    • Numerous potentially functional but non-genic conserved sequences on human chromosome 21
    • Dermitzakis ET, Reymond A, Lyle R, Scamuffa N, Ucla C, et al. 2002. Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature 420:578-582.
    • (2002) Nature , vol.420 , pp. 578-582
    • Dermitzakis, E.T.1    Reymond, A.2    Lyle, R.3    Scamuffa, N.4    Ucla, C.5
  • 98
    • 0242662461 scopus 로고    scopus 로고
    • Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)
    • Dermitzakis ET, Reymond A, Scamuffa N, Ucla C, Kirkness E, et al. 2003. Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science 302:1033-1035.
    • (2003) Science , vol.302 , pp. 1033-1035
    • Dermitzakis, E.T.1    Reymond, A.2    Scamuffa, N.3    Ucla, C.4    Kirkness, E.5
  • 99
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    • Loots GG, Locksley RM, Blankespoor CM, Wang ZE, Miller W, et al. 2000. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288:136-140.
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1    Locksley, R.M.2    Blankespoor, C.M.3    Wang, Z.E.4    Miller, W.5
  • 100
    • 0037673389 scopus 로고    scopus 로고
    • Human disease genes and their cloned mouse orthologs: Exploration of the FANTOM2 cDNA sequence data set
    • Schriml LM, Hill DP, Blake JA, Bono H, Wynshaw-Boris A, et al. 2003. Human disease genes and their cloned mouse orthologs: exploration of the FANTOM2 cDNA sequence data set. Genome Res 13:1496-1500.
    • (2003) Genome Res , vol.13 , pp. 1496-1500
    • Schriml, L.M.1    Hill, D.P.2    Blake, J.A.3    Bono, H.4    Wynshaw-Boris, A.5
  • 101
    • 0038349583 scopus 로고    scopus 로고
    • Comprehensive analysis of the mouse metabolome based on the transcriptome
    • Bono H, Nikaido I, Kasukawa T, Hayashizaki Y, Okazaki Y. 2003. Comprehensive analysis of the mouse metabolome based on the transcriptome. Genome Res 13:1345-1349.
    • (2003) Genome Res , vol.13 , pp. 1345-1349
    • Bono, H.1    Nikaido, I.2    Kasukawa, T.3    Hayashizaki, Y.4    Okazaki, Y.5
  • 102
    • 0038349507 scopus 로고    scopus 로고
    • Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling
    • Nikaido I, Saito C, Mizuno Y, Meguro M, Bono H, et al. 2003. Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling. Genome Res 13:1402-1409.
    • (2003) Genome Res , vol.13 , pp. 1402-1409
    • Nikaido, I.1    Saito, C.2    Mizuno, Y.3    Meguro, M.4    Bono, H.5
  • 103
    • 0037162885 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    • Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297:1301-1310.
    • (2002) Science , vol.297 , pp. 1301-1310
    • Aparicio, S.1    Chapman, J.2    Stupka, E.3    Putnam, N.4    Chia, J.M.5
  • 104
    • 0033834247 scopus 로고    scopus 로고
    • Telomere dynamics in cancer progression and prevention: Fundamental differences in human and mouse telomere biology
    • Wright WE, Shay JW. 2000. Telomere dynamics in cancer progression and prevention: fundamental differences in human and mouse telomere biology. Nat Med 6:849-851.
    • (2000) Nat Med , vol.6 , pp. 849-851
    • Wright, W.E.1    Shay, J.W.2
  • 105
    • 0032440892 scopus 로고    scopus 로고
    • Telomerase expression in chickens: Constitutive activity in somatic tissues and down-regulation in culture
    • Venkatesan RN, Price C. 1998. Telomerase expression in chickens: constitutive activity in somatic tissues and down-regulation in culture. Proc Natl Acad Sci USA 95:14763-14768.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14763-14768
    • Venkatesan, R.N.1    Price, C.2
  • 106
    • 0035878559 scopus 로고    scopus 로고
    • Temporal and spatial expression patterns of the CRX transcription factor and its downstream targets. Critical differences during human and mouse eye development
    • Bibb LC, Holt JK, Tarttelin EE, Hodges MD, Gregory-Evans K, et al. 2001. Temporal and spatial expression patterns of the CRX transcription factor and its downstream targets. Critical differences during human and mouse eye development. Hum Mol Genet 10:1571-1579.
    • (2001) Hum Mol Genet , vol.10 , pp. 1571-1579
    • Bibb, L.C.1    Holt, J.K.2    Tarttelin, E.E.3    Hodges, M.D.4    Gregory-Evans, K.5
  • 107
    • 0037066542 scopus 로고    scopus 로고
    • Intra-and interspecific variation in primate gene expression patterns
    • Enard W, Khaitovich P, Klose J, Zollner S, Heissig F, et al. 2002. Intra-and interspecific variation in primate gene expression patterns. Science 296:340-343.
    • (2002) Science , vol.296 , pp. 340-343
    • Enard, W.1    Khaitovich, P.2    Klose, J.3    Zollner, S.4    Heissig, F.5
  • 108
    • 0037436463 scopus 로고    scopus 로고
    • Functional genomics. How to make sense of sequence
    • Couzin J. 2003. Functional genomics. How to make sense of sequence. Science 299:1642.
    • (2003) Science , vol.299 , pp. 1642
    • Couzin, J.1
  • 109
    • 0002335754 scopus 로고
    • Dispensable genes
    • Ohno S. 1985. Dispensable genes. Trends Genet 1:160-164.
    • (1985) Trends Genet , vol.1 , pp. 160-164
    • Ohno, S.1
  • 110
    • 0035214768 scopus 로고    scopus 로고
    • Most of the human genome is transcribed
    • Wong GK, Passey DA, Yu J. 2001. Most of the human genome is transcribed. Genome Res 11:1975-1977.
    • (2001) Genome Res , vol.11 , pp. 1975-1977
    • Wong, G.K.1    Passey, D.A.2    Yu, J.3
  • 113
    • 12144287461 scopus 로고    scopus 로고
    • Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
    • Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, et al. 2004. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res 14:331-342.
    • (2004) Genome Res , vol.14 , pp. 331-342
    • Kampa, D.1    Cheng, J.2    Kapranov, P.3    Yamanaka, M.4    Brubaker, S.5
  • 114
    • 10744226597 scopus 로고    scopus 로고
    • Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts
    • Hirozane-Kishikawa T, Shiraki T, Waki K, Nakamura M, Arakawa T, et al. 2003. Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts. Biotechniques 35:510-516, 518.
    • (2003) Biotechniques , vol.35 , pp. 510-516
    • Hirozane-Kishikawa, T.1    Shiraki, T.2    Waki, K.3    Nakamura, M.4    Arakawa, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.