Exploring the chicken egg white proteome with combinatorial peptide ligand libraries

Journal of Proteome Research

Volumn 7, Issue 8, 2008, Pages 3461-3474

  D'Ambrosio, Chiara ^a   Arena, Simona ^a   Scaloni, Andrea ^a   Guerrier, Luc ^b   Boschetti, Egisto ^b   Mendieta, Martha Elena ^c   Citterio, Attilio ^c   Righetti, Pier Giorgio ^c  

^a CNR   (Italy)

^b CEA SACLAY   (France)

^c POLITECNICO DI MILANO   (Italy)

Author keywords

Egg white; Hexapeptide ligands; Low abundance proteome; Mass spectrometry; Peptide libraries

Indexed keywords

EGG WHITE; LIGAND; EGG PROTEIN; PEPTIDE LIBRARY; PROTEOME;

AMINO ACID SEQUENCE; ARTICLE; CHICKEN; COMBINATORIAL LIBRARY; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ISOLATION; PROTEOMICS; UNINDEXED SEQUENCE; ANIMAL; CHEMISTRY; MASS SPECTROMETRY; MOLECULAR GENETICS; POLYACRYLAMIDE GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; ANIMALS; CHICKENS; EGG PROTEINS; EGG WHITE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PROTEOME; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 43149095270     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr800193y     Document Type: Article

References (50)

1. Mine, Y. Recent advances in the understanding of egg white protein functionality. Trends Food Sci. Technol. 1995, 6, 225-232.
2. Mine, Y. Recent advances in egg protein functionality in the food system. Worlds Poult. Sci. J. 2002, 58, 31-39.
3. Campbell, L.; Raikos, V.; Euston, S. R. Modification of functional properties of egg-white proteins. Food 2003, 47, 369-376.
4. Yoshikawa, M.; Fujita, H.; Matoba, N.; Takenaka, Y.; et al. Bioactive peptides derived from food proteins preventing lifestyle-related diseases. BioFactors 2000, 12, 143-146.
5. Miguel, M.; Aleixandre, A. Antihypertensive peptides derived from egg proteins. J. Nutr. 2006, 136, 1457-1460.
6. Pellegrini, A.; Hülsmeier, A. J.; Hunziker, P.; Thomas, U. Proteolytic fragments of ovalbumin display antimicrobial activity. Biochim. Biophys. Acta 2004, 1672, 76-85.
7. Urisu, A.; Ando, H.; Morita, Y.; Wada, E.; et al. Allergenic activity of heated and ovomucoid depleted egg white. J. Allergy Clin. Immunol. 1997, 100, 171-176.
8. Añibarro, B.; Seoane, F. I.; Vila, C; Lombardero, M. Allergy to eggs from duck and goose without sensitization to hen egg proteins. J. Allergy Clin. Immunol. 2000, 105, 834-836.
9. Li-Chan, E.; Nakai, S. Biochemical basis for the properties of egg white. Crit. Rev. Poult. Biol. 1989, 2, 21-58.
10. Guerin-Dubiard, C; Pasco, M.; Hietanen, A.; Quiros del Bosque, A.; et al. Hen egg white fractionation by ion-exchange chromatography. J. Chromatogr., A 2005, 1090, 58-67.
11. Möller, C. C.; Thomas, D.; Van Dyk, D.; Rylatt, D.; Sheehan, M. Preparative-scale fractionation by isoelectric trapping under non- denaturing conditions: separation of egg white protein isoforms on a modified Gradiflow unit. Electrophoresis 2005, 26, 35-46.
12. Guérin-Dubiard, C.; Pasco, M.; Mollé, D.; Désert, C; et al. Proteomic analysis of hen egg white. J. Agric. Food Chem. 2006, 54, 3901-3910.
13. Raikos, V.; Hansen, R.; Campbell, L.; Euston, S. R. Separation and identification of hen egg protein isoforms using SDS-PAGE and 2D gel electrophoresis with MALDI-TOF mass spectrometry. Food Chem. 2006, 99, 702-710.
14. Mann, K. The chicken egg white proteome. Proteomics 2007, 7, 3558-3568.
15. Thulasiraman, V.; Lin, S.; Gheorghiu, L.; Lathrop, J.; et al. Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands. Electrophoresis 2005, 26, 3561-3571.
16. Righetti, P. G.; Boschetti, E.; Lomas, L.; Citterio, A. Protein Equalizer technology: the quest for a "democratic proteome". Proteomics 2006, 6, 3980-3992.
17. Righetti, P. G.; Boschetti, E. Sherlock Holmes and the proteomea detective story. FEBS J. 2007, 274, 897-905.
18. Boschetti, E.; Lomas, L.; Citterio, A.; Righetti, P. G. Romancing the "hidden proteome", Anno Domini two zero zero seven. J. Chromatogr., A 2007, 1153, 277-290.
19. Castagna, A.; Cecconi, D.; Sennels, L.; Rappsilber, J.; et al. Exploring the hidden human urinary proteome via ligand library beads. J. Proteome Res. 2005, 4, 1917-1930.
20. Sennels, L.; Salek, M.; Lomas, L.; Boschetti, E.; et al. Proteomic analysis of human blood serum using peptide library beads. J.; Proteome Res. 2007, 6, 4055-4062.
21. Guerrier, L.; Claverol, S.; Fortis, F.; Rinalducci, S.; et al. Exploring the platelet proteome via combinatorial, hexapeptide ligand libraries. J. Proteome Res. 2007, 6, 4290-4303.
22. Fortis, F.; Guerrier, L.; Areces, L. B.; Antonioli, P.; et al. A new approach for the detection and identification of protein impurities using combinatorial solid phase ligand libraries. J. Proteome Res. 2006, 5, 2577-2585.
23. Roux-Dalvai, F.; Gonzalez de Peredo, A.; Burlet-Schiltz, O.; Simó, C. Extensive analysis of the cytoplasmic proteome of human erythrocytes using the peptide ligand library technology and advanced mass spectrometry. Mol. Cell. Proteomics 2008, in press.
24. Laemmli, U. Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 1970, 227, 680-685.
25. Candiano, G.; Bruschi, M.; Musante, L.; Santucci, L. et al. Blue Silver: a very sensitive colloidal coomassie G-250 staining for proteome analysis. Electrophoresis 2004, 25, 1327-1333.
26. Hamdan, M.; Righetti, P. G. Proteomics Today, Wiley: Hoboken, NJ, 2005; pp 346-348.
27. Talamo, F.; D'Ambrosio, C; Arena, S.; Del Vecchio, P.; et al. Proteins from bovine tissues and biological fluids: defining a reference electrophoresis map for liver, kidney, muscle, plasma and red blood cells. Proteomics 2003, 3, 440-460.
28. Rocco, M.; D'Ambrosio, C; Arena, S.; Faurobert, M.; et al. Proteomic analysis of tomato fruits from two ecotypes during ripening. Proteomics 2006, 6, 3781-3791.
29. D'Ambrosio, C.; Arena, S.; Fulcoli, G.; Scheinfeld, M. H.; et al. Hyperphosphorylation of JNK-interacting protein 1, a protein associated with Alzheimer disease. Mol. Cell. Proteomics 2006, 5, 97-113.
30. MacCoss, M. J.; Wu, C. C.; Yates, J. R., III. Probability-based validation of protein identifications using a modified SEQUEST algorithm. Anal. Chem. 2002, 74, 5593-5599.
31. Link, A. J.; Eng, J.; Schieltz, D. M.; Carmack, E.; et al. Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 1999, 17, 676-682.
32. Peng, J.; Elias, J. E.; Thoreen, C. C.; Licklider, L. J.; et al. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2003, 2, 43-50.
33. Schaefer, H.; Chervet, J. P.; Bunse, C.; Joppich, C; et al. A peptide preconcentration approach for nano-high-performance liquid chromatography to diminish memory effects. Proteomics 2004, 4, 2541-2544.
34. Righetti, P. G.; Boschetti, E. The ProteoMiner and the FortyNiners: searching for gold nuggets in the proteomic arena. Mass Spectrom. Rev. 2008, in press.
35. Exploring the Human Plasma Proteome, Omenn, G. S., Ed.; WileyVCH: Weinheim, Germany, 2006; pp 1-372.
36. Zougman, A.; Pilch, B.; Podtelejnikov, A.; Kiehntopf, M.; et al. Integrated analysis of the cerebrospinal fluid peptidome and proteome. J. Proteome Res. 2008, 7, 386-399.
37. Kakhniashvili, D. G.; Bulla, L. A., Jr.; Goodman, S. R. The human erythrocyte proteome. Mol. Cell. Proteomics 2004, 3, 501-509.
38. Pasini, E. M.; Kirkegaard, M.; Mortensen, P.; Lutz, H. U.; et al. Indepth analysis of the membrane and cytosolic proteome of red blood cells. Blood 2006, 108, 791-801.
39. The International Chicken Genome Sequencing Consortium. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Nature 2004, 432, 695-777.
40. Corzo, A.; Kidd, M. T.; Pharr, G. T.; Burgess, S. C. Initial mapping of the chicken blood plasma proteome. Int. J. Poult. Sci. 2004, 3, 157-162.
41. Huang, S.-Y.; Lin, J.-H.; Chen, Y.-H.; Chuang, C.-K.; et al. Analysis of chicken serum proteome and differential protein expression during development in single-comb White Leghorn hens. Proteomics 2006, 6, 2217-2224.
42. Parada, C; Gato, A.; Aparicio, M.; Bueno, D. Proteome analysis of chick embryonic cerebrospinal fluid. Proteomics 2006, 6, 312-329.
43. Mann, K.; Mačeek, B.; Olsen, J. V. Proteomic analysis of the acid- soluble organic matrix of the chicken calcified eggshell layer. Proteomics 2006, 6, 3801-3810.
44. Mann, K.; Olsen, J. V.; Maček, B.; Gnad, F.; Mann, M. Phosphop- roteins of the chicken eggshell calcified layer. Proteomics 2007, 7, 106-115.
45. Lerrer, B.; Gilboa-Garber, N. Differential staining of western blots of avian egg white glycoproteins using diverse lectins. Electrophoresis 2002, 23, 8-14.
46. Robbe, C; Michalski, J. C.; Capon, C. Structural determination of O-glycans by tandem mass spectrometry. Methods Mol. Biol. 2006, 347, 109-123.
47. Zeiger, R. S. Current issues with influenza vaccination in egg allergy. J. Allergy Clin. Immunol. 2002, 110, 834-840.
48. Marc, C. Large variation in ovalbumin content in six European influenza vaccines. Pharm. Sci. Notes 2006, 1, 27-29.
49. Kursteiner, O.; Moser, C; Lazar, H.; Durrer, P. Influenza V-the influenza vaccine with the lowest ovalbumin content. Vaccine 2006, 24, 6632-6635.
50. Fortis, F.; Guerrier, L.; Rinalducci, S.; Zolla, L.; et al. Capturing and amplifying impurities from purified recombinant monoclonal antibodies via peptide libraries: a proteomics study. Proteomics 2007, 7, 1624-1633.