메뉴 건너뛰기




Volumn 27, Issue 6, 2008, Pages 596-608

The proteominer and the fortyniners: Searching for gold nuggets in the proteomic arena

Author keywords

Combinatorial peptide libraries; Hexapeptide ligands; Low abundance proteome; Mass spectrometry

Indexed keywords

AMINES; AMINO ACIDS; LIBRARIES; LIGANDS; MASS SPECTROMETERS; MASS SPECTROMETRY; ORGANIC ACIDS; PEPTIDES; PROTEINS; SPECTROMETERS; SPECTROMETRY; SPECTRUM ANALYSIS;

EID: 48849086000     PISSN: 02777037     EISSN: None     Source Type: Journal    
DOI: 10.1002/mas.20178     Document Type: Review
Times cited : (125)

References (50)
  • 1
    • 34249651243 scopus 로고    scopus 로고
    • Capturing and amplifying impurities from purified recombinant monoclonal antibodies via peptide library beads: A proteomic study
    • Antonioli P, Fortis F, Guerrier L, Rinalducci S, Zolla L, Righetti PG, Boschetti E. 2007. Capturing and amplifying impurities from purified recombinant monoclonal antibodies via peptide library beads: A proteomic study. Proteomics 7:1624-1633.
    • (2007) Proteomics , vol.7 , pp. 1624-1633
    • Antonioli, P.1    Fortis, F.2    Guerrier, L.3    Rinalducci, S.4    Zolla, L.5    Righetti, P.G.6    Boschetti, E.7
  • 2
    • 43949144961 scopus 로고    scopus 로고
    • Performance of combinatorial peptide libraries in capturing the low-abundance proteome. II: Behaviour of resins containing individual amino acids
    • in press
    • Bachi A, Simó C, Cattaneo A, Guerrier L, Fortis F, Boschetti E, Masseroli M, Righetti PG. 2008. Performance of combinatorial peptide libraries in capturing the low-abundance proteome. II: Behaviour of resins containing individual amino acids. Anal Chem (in press).
    • (2008) Anal Chem
    • Bachi, A.1    Simó, C.2    Cattaneo, A.3    Guerrier, L.4    Fortis, F.5    Boschetti, E.6    Masseroli, M.7    Righetti, P.G.8
  • 3
    • 37549067544 scopus 로고    scopus 로고
    • Haemoglobin depletion from red blood cell cytosol reveals new proteins in 2-D gel-based proteomics study
    • Bhattacharya D, Mukhopadhyay D, Chakrabarti A. 2007. Haemoglobin depletion from red blood cell cytosol reveals new proteins in 2-D gel-based proteomics study. Proteomics Clin Appl 1:561-564.
    • (2007) Proteomics Clin Appl , vol.1 , pp. 561-564
    • Bhattacharya, D.1    Mukhopadhyay, D.2    Chakrabarti, A.3
  • 5
    • 33846782845 scopus 로고    scopus 로고
    • Romancing the "hidden proteome", Anno Domini two zero zero seven
    • Boschetti E, Lomas L, Citterio A, Righetti PG. 2007a. Romancing the "hidden proteome", Anno Domini two zero zero seven. J Chromatogr A 1153:277-290.
    • (2007) J Chromatogr A , vol.1153 , pp. 277-290
    • Boschetti, E.1    Lomas, L.2    Citterio, A.3    Righetti, P.G.4
  • 6
    • 37549041716 scopus 로고    scopus 로고
    • The "Invisible Proteome": How to Capture the Low Abundance Proteins Via Combinatorial Ligand Libraries
    • Boschetti E, Monsarrat B, Righetti PG. 2007. The "Invisible Proteome": How to Capture the Low Abundance Proteins Via Combinatorial Ligand Libraries. Curr Proteomics 4:198-208.
    • (2007) Curr Proteomics , vol.4 , pp. 198-208
    • Boschetti, E.1    Monsarrat, B.2    Righetti, P.G.3
  • 8
    • 35848970035 scopus 로고    scopus 로고
    • MALDI imaging mass spectrometry: Molecular snapshots of biochemical systems
    • Cornett DS, Reyzer ML, Chaurand P, Caprioli RM. 2007. MALDI imaging mass spectrometry: Molecular snapshots of biochemical systems. Nature Methods 4:828-833.
    • (2007) Nature Methods , vol.4 , pp. 828-833
    • Cornett, D.S.1    Reyzer, M.L.2    Chaurand, P.3    Caprioli, R.M.4
  • 9
    • 28844451028 scopus 로고    scopus 로고
    • Disorders of erythrocyte glycolysis and nucleotide metabolism
    • Handin RI, Lux SE, Stossel TP, editors, Chapter 53. Philadelphia: Lippincott Williams & Wilkins. pp
    • Eber SW. 2003. Disorders of erythrocyte glycolysis and nucleotide metabolism, In: Handin RI, Lux SE, Stossel TP, editors. Blood: Principles and practice of hematology, Chapter 53. Philadelphia: Lippincott Williams & Wilkins. pp. 1887-1920.
    • (2003) Blood: Principles and practice of hematology , pp. 1887-1920
    • Eber, S.W.1
  • 10
    • 23944524368 scopus 로고    scopus 로고
    • Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
    • Echan LA, Tang HY, Ali-Khan N, Lee KB, Speicher DW. 2005. Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma. Proteomics 13:3292-3303.
    • (2005) Proteomics , vol.13 , pp. 3292-3303
    • Echan, L.A.1    Tang, H.Y.2    Ali-Khan, N.3    Lee, K.B.4    Speicher, D.W.5
  • 12
    • 48849089836 scopus 로고    scopus 로고
    • Protein-protein interactions
    • Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors, Berlin: Springer, pp
    • Gavin AC. 2007. Protein-protein interactions. In: Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors. Proteome research: Concepts, technology and applications. Berlin: Springer, pp. 169-192.
    • (2007) Proteome research: Concepts, technology and applications , pp. 169-192
    • Gavin, A.C.1
  • 14
    • 34248573932 scopus 로고    scopus 로고
    • Protocol for the purification of proteins from biological extracts for identification by mass spectrometry
    • Guerrier L, Boschetti E. 2007. Protocol for the purification of proteins from biological extracts for identification by mass spectrometry. Nature Protoc 2:831-837.
    • (2007) Nature Protoc , vol.2 , pp. 831-837
    • Guerrier, L.1    Boschetti, E.2
  • 17
    • 36549006447 scopus 로고    scopus 로고
    • Contribution of solid-phase hexapeptide ligand libraries to the repertoire of human bile proteins
    • Guerrier L, Claverol S, Finzi L, Paye F, Fortis F, Boschetti E, Housset C. 2007b. Contribution of solid-phase hexapeptide ligand libraries to the repertoire of human bile proteins. J Chromatogr A 1176:192-205.
    • (2007) J Chromatogr A , vol.1176 , pp. 192-205
    • Guerrier, L.1    Claverol, S.2    Finzi, L.3    Paye, F.4    Fortis, F.5    Boschetti, E.6    Housset, C.7
  • 19
    • 43149123265 scopus 로고    scopus 로고
    • Sample preparation and pre-fractionation techniques for electrophoresis-based proteomics
    • Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors, Berlin: Springer, pp
    • Herbert BR, Righetti PG, Citterio A, Boschetti E. 2007. Sample preparation and pre-fractionation techniques for electrophoresis-based proteomics. In: Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors. Proteome research: Concepts, technology and applications. Berlin: Springer, pp. 15-40.
    • (2007) Proteome research: Concepts, technology and applications , pp. 15-40
    • Herbert, B.R.1    Righetti, P.G.2    Citterio, A.3    Boschetti, E.4
  • 20
    • 57249086924 scopus 로고    scopus 로고
    • Protein identification in proteomics
    • Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors, Berlin: Springer, pp
    • Hernandez P, Binz PL, Wilkins MR. 2007. Protein identification in proteomics. In: Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors. Proteome research: Concepts, technology and applications. Berlin: Springer, pp. 41-68.
    • (2007) Proteome research: Concepts, technology and applications , pp. 41-68
    • Hernandez, P.1    Binz, P.L.2    Wilkins, M.R.3
  • 21
    • 5444254250 scopus 로고    scopus 로고
    • Hirabayashi J. 2004. Lectin-based structural glycomics: Glycoproteomics and glycan profiling. Glyconj J 21:35-40.
    • Hirabayashi J. 2004. Lectin-based structural glycomics: Glycoproteomics and glycan profiling. Glyconj J 21:35-40.
  • 22
    • 0038364020 scopus 로고    scopus 로고
    • Organelle proteomics: Implications for subcellular fractionation in proteomics
    • Huber LA, Pfaller K, Vietor I. 2003. Organelle proteomics: Implications for subcellular fractionation in proteomics. Circulation Res 92:962-968.
    • (2003) Circulation Res , vol.92 , pp. 962-968
    • Huber, L.A.1    Pfaller, K.2    Vietor, I.3
  • 23
    • 2642551423 scopus 로고    scopus 로고
    • The human erythrocyte proteome. Analysis by ion-trap mass spectrometry
    • Kakhniashvili DG, Bulla LA Jr, Goodman SR. 2004. The human erythrocyte proteome. Analysis by ion-trap mass spectrometry. Mol Cell Proteomics 3:501-509.
    • (2004) Mol Cell Proteomics , vol.3 , pp. 501-509
    • Kakhniashvili, D.G.1    Bulla Jr, L.A.2    Goodman, S.R.3
  • 24
    • 35848955168 scopus 로고    scopus 로고
    • Mass-spectrometry-based functional proteomics: From molecular machines to protein networks
    • Köcher T, Superti-Furga G. 2007. Mass-spectrometry-based functional proteomics: From molecular machines to protein networks. Nature Methods 4:807-815.
    • (2007) Nature Methods , vol.4 , pp. 807-815
    • Köcher, T.1    Superti-Furga, G.2
  • 26
    • 24944519450 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium oxide microcolumns
    • Larsen MR, Thingholm TE, Jensen ON, Roepstorff P, Jorgensen TJ. 2005. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium oxide microcolumns. Mol Cell Proteomics 4:873-886.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 873-886
    • Larsen, M.R.1    Thingholm, T.E.2    Jensen, O.N.3    Roepstorff, P.4    Jorgensen, T.J.5
  • 27
    • 9144264169 scopus 로고    scopus 로고
    • Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M. 2004. A map of the interactome network of the metazoan C. elegans. Science 303:540-543.
    • Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M. 2004. A map of the interactome network of the metazoan C. elegans. Science 303:540-543.
  • 29
    • 35848929694 scopus 로고    scopus 로고
    • Analysis and validation of proteomic data generated by mass spectrometry
    • Nesvizhskii A, Vitek O, Aebersold R. 2007. Analysis and validation of proteomic data generated by mass spectrometry. Nature Methods 4:787-797.
    • (2007) Nature Methods , vol.4 , pp. 787-797
    • Nesvizhskii, A.1    Vitek, O.2    Aebersold, R.3
  • 30
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • O'Farrell PH. 1975. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 250:4007-4021.
    • (1975) J Biol Chem , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 32
    • 57249114214 scopus 로고    scopus 로고
    • Quantification of serum and plasma proteins after enrichment of low-abundance proteins with a combinatorial peptide library
    • in press
    • Paulus A, Thulasiraman V, Academia K, Freeby S, Roth S, Wehr T, Liu N, Smith K. 2008. Quantification of serum and plasma proteins after enrichment of low-abundance proteins with a combinatorial peptide library. BioTechniques (in press).
    • (2008) BioTechniques
    • Paulus, A.1    Thulasiraman, V.2    Academia, K.3    Freeby, S.4    Roth, S.5    Wehr, T.6    Liu, N.7    Smith, K.8
  • 33
    • 0014959851 scopus 로고
    • Group fractionation of plasma proteins on dipolar ion-exchangers
    • Porath J, Fornsted N. 1970. Group fractionation of plasma proteins on dipolar ion-exchangers. J Chromatogr 51:479-489.
    • (1970) J Chromatogr , vol.51 , pp. 479-489
    • Porath, J.1    Fornsted, N.2
  • 34
    • 0014956349 scopus 로고
    • Chromatography of proteins in dipolar ion adsorbants
    • Porath J, Fryklund L. 1970. Chromatography of proteins in dipolar ion adsorbants. Nature 226:1169-1170.
    • (1970) Nature , vol.226 , pp. 1169-1170
    • Porath, J.1    Fryklund, L.2
  • 35
    • 33846844892 scopus 로고    scopus 로고
    • Sherlock Holmes and the proteome - A detective story
    • Righetti PG, Boschetti E. 2007. Sherlock Holmes and the proteome - A detective story. FEBS J 274:897-905.
    • (2007) FEBS J , vol.274 , pp. 897-905
    • Righetti, P.G.1    Boschetti, E.2
  • 36
    • 84909460607 scopus 로고
    • Zein: Macromolecular properties, biosynthesis and genetic regulation
    • Radola BJ, Graesslin D, editors, Berlin: W. de Gruyter. pp
    • Righetti PG, Gianazza E, Salamini F, Galante E, Viotti A, Soave C. 1977. Zein: Macromolecular properties, biosynthesis and genetic regulation. In: Radola BJ, Graesslin D, editors. Electrofocusing and isotachophoresis. Berlin: W. de Gruyter. pp. 199-211.
    • (1977) Electrofocusing and isotachophoresis , pp. 199-211
    • Righetti, P.G.1    Gianazza, E.2    Salamini, F.3    Galante, E.4    Viotti, A.5    Soave, C.6
  • 37
    • 33750112796 scopus 로고    scopus 로고
    • Protein equalizer technology: The quest for a "democratic proteome
    • Righetti PG, Boschetti E, Lomas L, Citterio A. 2006. Protein equalizer technology: The quest for a "democratic proteome". Proteomics 6: 3980-3992.
    • (2006) Proteomics , vol.6 , pp. 3980-3992
    • Righetti, P.G.1    Boschetti, E.2    Lomas, L.3    Citterio, A.4
  • 43
    • 4444335470 scopus 로고    scopus 로고
    • The ABC's (and XYZ's) of peptide sequencing
    • Steen H, Mann M. 2004. The ABC's (and XYZ's) of peptide sequencing. Nature Rev Mol Cell Biol 5:699-711.
    • (2004) Nature Rev Mol Cell Biol , vol.5 , pp. 699-711
    • Steen, H.1    Mann, M.2
  • 44
    • 35148835538 scopus 로고    scopus 로고
    • Peptidomics analysis of human blood specimens for biomarker discovery
    • Tammen H, Peck A, Budde P, Zucht HD. 2007. Peptidomics analysis of human blood specimens for biomarker discovery. Expert Rev Mol Diagn 7:605-613.
    • (2007) Expert Rev Mol Diagn , vol.7 , pp. 605-613
    • Tammen, H.1    Peck, A.2    Budde, P.3    Zucht, H.D.4
  • 45
    • 20544478148 scopus 로고    scopus 로고
    • Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands
    • Thulasiraman V, Lin S, Gheorghiu L, Lathrop J, Lomas L, Hammond D, Boschetti E. 2005. Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands. Electrophoresis 26:3561-3571.
    • (2005) Electrophoresis , vol.26 , pp. 3561-3571
    • Thulasiraman, V.1    Lin, S.2    Gheorghiu, L.3    Lathrop, J.4    Lomas, L.5    Hammond, D.6    Boschetti, E.7
  • 47
    • 0742299380 scopus 로고    scopus 로고
    • Glucose-6-phosphate dehydrogenase deficiency and related disorders
    • Handin RI, Lux SE, Stossel TP, editors, Philadelphia: Lippincott Williams & Wilkins. Chapter 54 pp
    • Vulliamy TJ, Luzzatto L. 2003. Glucose-6-phosphate dehydrogenase deficiency and related disorders. In: Handin RI, Lux SE, Stossel TP, editors. Blood: Principles and practice of hematology. Philadelphia: Lippincott Williams & Wilkins. Chapter 54 pp. 1921-1950.
    • (2003) Blood: Principles and practice of hematology , pp. 1921-1950
    • Vulliamy, T.J.1    Luzzatto, L.2
  • 48
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR III. 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nature Biotechnol 19:242-247.
    • (2001) Nature Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 49
    • 35848970747 scopus 로고    scopus 로고
    • Mapping proteins post-translational modifications with mass spectrometry
    • Wietze ES, Old WM, Resing KA, Ahn NG. 2007. Mapping proteins post-translational modifications with mass spectrometry. Nature Methods 4:798-806.
    • (2007) Nature Methods , vol.4 , pp. 798-806
    • Wietze, E.S.1    Old, W.M.2    Resing, K.A.3    Ahn, N.G.4
  • 50
    • 68049106676 scopus 로고    scopus 로고
    • Ten years of the proteome
    • Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors, Berlin: Springer, pp
    • Wilkins MR, Appel RD. 2007. Ten years of the proteome. In: Wilkins MR, Appel RD, Williams KL, Hochstrasser DF, editors. Proteome research: Concepts, technology and applications. Berlin: Springer, pp. 1-13.
    • (2007) Proteome research: Concepts, technology and applications , pp. 1-13
    • Wilkins, M.R.1    Appel, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.