-
1
-
-
0036468808
-
Linkage disequilibrium: What history has to tell us
-
Nordborg M., and Tavare S. Linkage disequilibrium: What history has to tell us. Trends Genet. 18 (2002) 83-90
-
(2002)
Trends Genet.
, vol.18
, pp. 83-90
-
-
Nordborg, M.1
Tavare, S.2
-
2
-
-
0034977045
-
Linkage disequilibrium in humans: Models and data
-
Pritchard J.K., and Przeworski M. Linkage disequilibrium in humans: Models and data. Am. J. Hum. Genet. 69 (2001) 1-14
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 1-14
-
-
Pritchard, J.K.1
Przeworski, M.2
-
3
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
Sabeti P.C., Reich D.E., Higgins J.M., Levine H.Z.P., Richter D.J., Schaffner S.F., Gabriel S.B., Platko J.V., Patterson N.J., McDonald G.J., et al. Detecting recent positive selection in the human genome from haplotype structure. Nature 419 (2002) 832-837
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.P.4
Richter, D.J.5
Schaffner, S.F.6
Gabriel, S.B.7
Platko, J.V.8
Patterson, N.J.9
McDonald, G.J.10
-
4
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
McVean G.A., Myers S.R., Hunt S., Deloukas P., Bentley D.R., and Donnelly P. The fine-scale structure of recombination rate variation in the human genome. Science 304 (2004) 581-584
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
McVean, G.A.1
Myers, S.R.2
Hunt, S.3
Deloukas, P.4
Bentley, D.R.5
Donnelly, P.6
-
5
-
-
26844482093
-
A fine-scale map of recombination rates and hotspots across the human genome
-
Myers S., Bottolo L., Freeman C., McVean G., and Donnelly P. A fine-scale map of recombination rates and hotspots across the human genome. Science 310 (2005) 321-324
-
(2005)
Science
, vol.310
, pp. 321-324
-
-
Myers, S.1
Bottolo, L.2
Freeman, C.3
McVean, G.4
Donnelly, P.5
-
6
-
-
1942511512
-
Insights into recombination from patterns of linkage disequilibrium in humans
-
Ptak S.E., Voelpel K., and Przeworski M. Insights into recombination from patterns of linkage disequilibrium in humans. Genetics 167 (2004) 387-397
-
(2004)
Genetics
, vol.167
, pp. 387-397
-
-
Ptak, S.E.1
Voelpel, K.2
Przeworski, M.3
-
7
-
-
33749394003
-
Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome
-
Eberle M.A., Rieder M.J., Kruglyak L., and Nickerson D.A. Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome. Plos Genetics 2 (2006) 1319-1327
-
(2006)
Plos Genetics
, vol.2
, pp. 1319-1327
-
-
Eberle, M.A.1
Rieder, M.J.2
Kruglyak, L.3
Nickerson, D.A.4
-
9
-
-
13144306071
-
Genome-wide association studies for common diseases and complex traits
-
Hirschhorn J.N., and Daly M.J. Genome-wide association studies for common diseases and complex traits. Nat. Rev. Genet. 6 (2005) 95-108
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 95-108
-
-
Hirschhorn, J.N.1
Daly, M.J.2
-
10
-
-
0033786787
-
Linkage disequilibrium and the search for complex disease genes
-
Jorde L.B. Linkage disequilibrium and the search for complex disease genes. Genome Res. 10 (2000) 1435-1444
-
(2000)
Genome Res.
, vol.10
, pp. 1435-1444
-
-
Jorde, L.B.1
-
11
-
-
0033039497
-
Prospects for whole-genome linkage disequilibrium mapping of common disease genes
-
Kruglyak L. Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat. Genet. 22 (1999) 139-144
-
(1999)
Nat. Genet.
, vol.22
, pp. 139-144
-
-
Kruglyak, L.1
-
12
-
-
0029741063
-
The future of genetic studies of complex human diseases
-
Risch N., and Merikangas K. The future of genetic studies of complex human diseases. Science 273 (1996) 1516-1517
-
(1996)
Science
, vol.273
, pp. 1516-1517
-
-
Risch, N.1
Merikangas, K.2
-
13
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
The International HapMap Consortium
-
The International HapMap Consortium. A second generation human haplotype map of over 3.1 million SNPs. Nature 449 (2007) 851-861
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
-
14
-
-
79959524146
-
A haplotype map of the human genome
-
The International HapMap Consortium
-
The International HapMap Consortium. A haplotype map of the human genome. Nature 437 (2005) 1299-1320
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
15
-
-
13844313862
-
Whole-genome patterns of common DNA variation in three human populations
-
Hinds D.A., Stuve L.L., Nilsen G.B., Halperin E., Eskin E., Ballinger D.G., Frazer K.A., and Cox D.R. Whole-genome patterns of common DNA variation in three human populations. Science 307 (2005) 1072-1079
-
(2005)
Science
, vol.307
, pp. 1072-1079
-
-
Hinds, D.A.1
Stuve, L.L.2
Nilsen, G.B.3
Halperin, E.4
Eskin, E.5
Ballinger, D.G.6
Frazer, K.A.7
Cox, D.R.8
-
16
-
-
42749084508
-
Optimal marker characteristics for genome screens using linkage disequilibrium tests
-
Chapman N.H., and Wijsman E.M. Optimal marker characteristics for genome screens using linkage disequilibrium tests. Am. J. Hum. Genet. 61 (1997) A271-a271
-
(1997)
Am. J. Hum. Genet.
, vol.61
-
-
Chapman, N.H.1
Wijsman, E.M.2
-
17
-
-
0142119390
-
Power of genome-wide linkage disequilibrium testing by using microsatellite markers
-
Ohashi J., and Tokunaga K. Power of genome-wide linkage disequilibrium testing by using microsatellite markers. J. Hum. Genet. 48 (2003) 487-491
-
(2003)
J. Hum. Genet.
, vol.48
, pp. 487-491
-
-
Ohashi, J.1
Tokunaga, K.2
-
18
-
-
0033071177
-
Comparison of the power and accuracy of biallelic and microsatellite markers in population-based gene-mapping methods
-
Xiong M., and Jin L. Comparison of the power and accuracy of biallelic and microsatellite markers in population-based gene-mapping methods. Am. J. Hum. Genet. 64 (1999) 629-640
-
(1999)
Am. J. Hum. Genet.
, vol.64
, pp. 629-640
-
-
Xiong, M.1
Jin, L.2
-
19
-
-
3042782819
-
Microsatellites: Simple sequences with complex evolution
-
Ellegren H. Microsatellites: Simple sequences with complex evolution. Nat. Rev. Genet. 5 (2004) 435-445
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
20
-
-
0027161022
-
Mutation of human short tandem repeats
-
Weber J.L., and Wong C. Mutation of human short tandem repeats. Hum. Mol. Genet. 2 (1993) 1123-1128
-
(1993)
Hum. Mol. Genet.
, vol.2
, pp. 1123-1128
-
-
Weber, J.L.1
Wong, C.2
-
21
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson G., and Gutman G.A. Slipped-strand mispairing: A major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4 (1987) 203-221
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
22
-
-
0033828761
-
Estimate of the mutation rate per nucleotide in humans
-
Nachman M.W., and Crowell S.L. Estimate of the mutation rate per nucleotide in humans. Genetics 156 (2000) 297-304
-
(2000)
Genetics
, vol.156
, pp. 297-304
-
-
Nachman, M.W.1
Crowell, S.L.2
-
24
-
-
0035163547
-
Extent and distribution of linkage disequilibrium in three genomic regions
-
Abecasis G.R., Noguchi E., Heinzmann A., Traherne J.A., Bhattacharyya S., Leaves N.I., Anderson G.G., Zhang Y.M., Lench N.J., Carey A., et al. Extent and distribution of linkage disequilibrium in three genomic regions. Am. J. Hum. Genet. 68 (2001) 191-197
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 191-197
-
-
Abecasis, G.R.1
Noguchi, E.2
Heinzmann, A.3
Traherne, J.A.4
Bhattacharyya, S.5
Leaves, N.I.6
Anderson, G.G.7
Zhang, Y.M.8
Lench, N.J.9
Carey, A.10
-
25
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
Gabriel S.B., Schaffner S.F., Nguyen H., Moore J.M., Roy J., Blumenstiel B., Higgins J., DeFelice M., Lochner A., Faggart M., et al. The structure of haplotype blocks in the human genome. Science 296 (2002) 2225-2229
-
(2002)
Science
, vol.296
, pp. 2225-2229
-
-
Gabriel, S.B.1
Schaffner, S.F.2
Nguyen, H.3
Moore, J.M.4
Roy, J.5
Blumenstiel, B.6
Higgins, J.7
DeFelice, M.8
Lochner, A.9
Faggart, M.10
-
26
-
-
0035837267
-
Linkage disequilibrium in the human genome
-
Reich D.E., Cargill M., Bolk S., Ireland J., Sabeti P.C., Richter D.J., Lavery T., Kouyoumjian R., Farhadian S.F., Ward R., and Lander E.S. Linkage disequilibrium in the human genome. Nature 411 (2001) 199-204
-
(2001)
Nature
, vol.411
, pp. 199-204
-
-
Reich, D.E.1
Cargill, M.2
Bolk, S.3
Ireland, J.4
Sabeti, P.C.5
Richter, D.J.6
Lavery, T.7
Kouyoumjian, R.8
Farhadian, S.F.9
Ward, R.10
Lander, E.S.11
-
27
-
-
0041989834
-
Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome
-
Clark A.G., Nielsen R., Signorovitch J., Matise T.C., Glanowski S., Heil J., Winn-Deen E.S., Holden A.L., and Lai E. Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome. Am. J. Hum. Genet. 73 (2003) 285-300
-
(2003)
Am. J. Hum. Genet.
, vol.73
, pp. 285-300
-
-
Clark, A.G.1
Nielsen, R.2
Signorovitch, J.3
Matise, T.C.4
Glanowski, S.5
Heil, J.6
Winn-Deen, E.S.7
Holden, A.L.8
Lai, E.9
-
28
-
-
0034791035
-
High-resolution haplotype structure in the human genome
-
Daly M.J., Rioux J.D., Schaffner S.E., Hudson T.J., and Lander E.S. High-resolution haplotype structure in the human genome. Nat. Genet. 29 (2001) 229-232
-
(2001)
Nat. Genet.
, vol.29
, pp. 229-232
-
-
Daly, M.J.1
Rioux, J.D.2
Schaffner, S.E.3
Hudson, T.J.4
Lander, E.S.5
-
29
-
-
0035941029
-
Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21
-
Patil N., Berno A.J., Hinds D.A., Barrett W.A., Doshi J.M., Hacker C.R., Kautzer C.R., Lee D.H., Marjoribanks C., McDonough D.P., et al. Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21. Science 294 (2001) 1719-1723
-
(2001)
Science
, vol.294
, pp. 1719-1723
-
-
Patil, N.1
Berno, A.J.2
Hinds, D.A.3
Barrett, W.A.4
Doshi, J.M.5
Hacker, C.R.6
Kautzer, C.R.7
Lee, D.H.8
Marjoribanks, C.9
McDonough, D.P.10
-
30
-
-
33750444621
-
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
-
Conrad D.F., Jakobsson M., Coop G., Wen X., Wall J.D., Rosenberg N.A., and Pritchard J.K. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat. Genet. 38 (2006) 1251-1260
-
(2006)
Nat. Genet.
, vol.38
, pp. 1251-1260
-
-
Conrad, D.F.1
Jakobsson, M.2
Coop, G.3
Wen, X.4
Wall, J.D.5
Rosenberg, N.A.6
Pritchard, J.K.7
-
31
-
-
0344500841
-
A scan for linkage disequilibrium across the human genome
-
Huttley G.A., Smith M.W., Carrington M., and O'Brien S.J. A scan for linkage disequilibrium across the human genome. Genetics 152 (1999) 1711-1722
-
(1999)
Genetics
, vol.152
, pp. 1711-1722
-
-
Huttley, G.A.1
Smith, M.W.2
Carrington, M.3
O'Brien, S.J.4
-
32
-
-
70350211660
-
Can long-range microsatellite data be used to predict short-range linkage disequilibrium?
-
Schulze T.G., Chen Y.S., Akula N., Hennessy K., Badner J.A., McInnis M.G., DePaulo J.R., Schumacher J., Cichon S., Propping P., et al. Can long-range microsatellite data be used to predict short-range linkage disequilibrium?. Hum. Mol. Genet. 11 (2002) 1363-1372
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 1363-1372
-
-
Schulze, T.G.1
Chen, Y.S.2
Akula, N.3
Hennessy, K.4
Badner, J.A.5
McInnis, M.G.6
DePaulo, J.R.7
Schumacher, J.8
Cichon, S.9
Propping, P.10
-
33
-
-
0037234025
-
The interval of linkage disequilibrium (LD) detected with microsatellite and SNP markers in chromosomes of Finnish populations with different histories
-
Varilo T., Paunio T., Parker A., Perola M., Meyer J., Terwilliger J.D., and Peltonen L. The interval of linkage disequilibrium (LD) detected with microsatellite and SNP markers in chromosomes of Finnish populations with different histories. Hum. Mol. Genet. 12 (2003) 51-59
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 51-59
-
-
Varilo, T.1
Paunio, T.2
Parker, A.3
Perola, M.4
Meyer, J.5
Terwilliger, J.D.6
Peltonen, L.7
-
34
-
-
33846334430
-
Microsatellite markers for genome-wide association studies
-
Bahram S., and Inoko H. Microsatellite markers for genome-wide association studies. Nat. Rev. Genet. 8 (2007)
-
(2007)
Nat. Rev. Genet.
, vol.8
-
-
Bahram, S.1
Inoko, H.2
-
35
-
-
33846335496
-
Reply: Microsatellite markers for genome-wide association studies
-
Jorgenson E., and Witte J.S. Reply: Microsatellite markers for genome-wide association studies. Nat. Rev. Genet. 8 (2007)
-
(2007)
Nat. Rev. Genet.
, vol.8
-
-
Jorgenson, E.1
Witte, J.S.2
-
36
-
-
29444441336
-
A high-resolution survey of deletion polymorphism in the human genome
-
Conrad D.F., Andrews T.D., Carter N.P., Hurles M.E., and Pritchard J.K. A high-resolution survey of deletion polymorphism in the human genome. Nat. Genet. 38 (2006) 75-81
-
(2006)
Nat. Genet.
, vol.38
, pp. 75-81
-
-
Conrad, D.F.1
Andrews, T.D.2
Carter, N.P.3
Hurles, M.E.4
Pritchard, J.K.5
-
37
-
-
29444450702
-
Common deletions and SNPs are in linkage disequilibrium in the human genome
-
Hinds D.A., Kloek A.P., Jen M., Chen X.Y., and Frazer K.A. Common deletions and SNPs are in linkage disequilibrium in the human genome. Nat. Genet. 38 (2006) 82-85
-
(2006)
Nat. Genet.
, vol.38
, pp. 82-85
-
-
Hinds, D.A.1
Kloek, A.P.2
Jen, M.3
Chen, X.Y.4
Frazer, K.A.5
-
38
-
-
33746513094
-
Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome
-
Locke D.P., Sharp A.J., McCarroll S.A., McGrath S.D., Newman T.L., Cheng Z., Schwartz S., Albertson D.G., Pinkel D., Altshuler D.M., and Eichler E.E. Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome. Am. J. Hum. Genet. 79 (2006) 275-290
-
(2006)
Am. J. Hum. Genet.
, vol.79
, pp. 275-290
-
-
Locke, D.P.1
Sharp, A.J.2
McCarroll, S.A.3
McGrath, S.D.4
Newman, T.L.5
Cheng, Z.6
Schwartz, S.7
Albertson, D.G.8
Pinkel, D.9
Altshuler, D.M.10
Eichler, E.E.11
-
39
-
-
0036852236
-
SNPSTRs: Empirically derived, rapidly typed, autosomal haplotypes for inference of population history and mutational processes
-
Mountain J.L., Knight A., Jobin M., Gignoux C., Miller A., Lin A.A., and Underhill P.A. SNPSTRs: Empirically derived, rapidly typed, autosomal haplotypes for inference of population history and mutational processes. Genome Res. 12 (2002) 1766-1772
-
(2002)
Genome Res.
, vol.12
, pp. 1766-1772
-
-
Mountain, J.L.1
Knight, A.2
Jobin, M.3
Gignoux, C.4
Miller, A.5
Lin, A.A.6
Underhill, P.A.7
-
40
-
-
33746361176
-
Integrating patterns of polymorphism at SNPs and STRs
-
Payseur B.A., and Cutter A.D. Integrating patterns of polymorphism at SNPs and STRs. Trends Genet. 22 (2006) 424-429
-
(2006)
Trends Genet.
, vol.22
, pp. 424-429
-
-
Payseur, B.A.1
Cutter, A.D.2
-
41
-
-
9444229272
-
STRP Screening Sets for the human genome at 5 cM density
-
Ghebranious N., Vaske D., Yu A.D., Zhao C.F., Marth G., and Weber J.L. STRP Screening Sets for the human genome at 5 cM density. BMC Genomics 4 (2003) 6
-
(2003)
BMC Genomics
, vol.4
, pp. 6
-
-
Ghebranious, N.1
Vaske, D.2
Yu, A.D.3
Zhao, C.F.4
Marth, G.5
Weber, J.L.6
-
42
-
-
0035228946
-
Genotyping for human whole-genome scans: Past, present and future
-
Weber J.L., and Broman K. Genotyping for human whole-genome scans: Past, present and future. Adv. Genet. 42 (2001) 77-96
-
(2001)
Adv. Genet.
, vol.42
, pp. 77-96
-
-
Weber, J.L.1
Broman, K.2
-
43
-
-
18544381909
-
A high-resolution recombination map of the human genome
-
Kong A., Gudbjartsson D.F., Sainz J., Jonsdottir G.M., Gudjonsson S.A., Richardsson B., Sigurdardottir S., Barnard J., Hallbeck B., Masson G., et al. A high-resolution recombination map of the human genome. Nat. Genet. 31 (2002) 241-247
-
(2002)
Nat. Genet.
, vol.31
, pp. 241-247
-
-
Kong, A.1
Gudbjartsson, D.F.2
Sainz, J.3
Jonsdottir, G.M.4
Gudjonsson, S.A.5
Richardsson, B.6
Sigurdardottir, S.7
Barnard, J.8
Hallbeck, B.9
Masson, G.10
-
44
-
-
13844270527
-
Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation
-
Stephens M., and Scheet P. Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am. J. Hum. Genet. 76 (2005) 449-462
-
(2005)
Am. J. Hum. Genet.
, vol.76
, pp. 449-462
-
-
Stephens, M.1
Scheet, P.2
-
45
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens M., Smith N.J., and Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68 (2001) 978-989
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
46
-
-
33344458848
-
A comparison of phasing algorithms for trios and unrelated individuals
-
Marchini J., Cutler D., Patterson N., Stephens M., Eskin E., Halperin E., Lin S., Qin Z.S., Munro H.M., Abecasis G.R., and Donnelly P. A comparison of phasing algorithms for trios and unrelated individuals. Am. J. Hum. Genet. 78 (2006) 437-450
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 437-450
-
-
Marchini, J.1
Cutler, D.2
Patterson, N.3
Stephens, M.4
Eskin, E.5
Halperin, E.6
Lin, S.7
Qin, Z.S.8
Munro, H.M.9
Abecasis, G.R.10
Donnelly, P.11
-
47
-
-
0002907949
-
The interaction of selection and linkage. I. General considerations; heterotic models
-
Lewontin R.C. The interaction of selection and linkage. I. General considerations; heterotic models. Genetics 49 (1964) 49-67
-
(1964)
Genetics
, vol.49
, pp. 49-67
-
-
Lewontin, R.C.1
-
48
-
-
0023430504
-
Gametic disequilibrium measures: Proceed with caution
-
Hedrick P.W. Gametic disequilibrium measures: Proceed with caution. Genetics 117 (1987) 331-341
-
(1987)
Genetics
, vol.117
, pp. 331-341
-
-
Hedrick, P.W.1
-
49
-
-
0034017850
-
GOLD - Graphical Overview of Linkage Disequilibrium
-
Abecasis G.R., and Cookson W.O.C. GOLD - Graphical Overview of Linkage Disequilibrium. Bioinformatics 16 (2000) 182-183
-
(2000)
Bioinformatics
, vol.16
, pp. 182-183
-
-
Abecasis, G.R.1
Cookson, W.O.C.2
-
50
-
-
1642330931
-
Linkage disequilibrium testing when linkage phase is unknown
-
Schaid D.J. Linkage disequilibrium testing when linkage phase is unknown. Genetics 166 (2004) 505-512
-
(2004)
Genetics
, vol.166
, pp. 505-512
-
-
Schaid, D.J.1
-
51
-
-
0018332021
-
Inferences about linkage disequilibrium
-
Weir B.S. Inferences about linkage disequilibrium. Biometrics 35 (1979) 235-254
-
(1979)
Biometrics
, vol.35
, pp. 235-254
-
-
Weir, B.S.1
-
53
-
-
0001677717
-
Controlling the False Discovery Rate - a Practical and Powerful Approach to Multiple Testing
-
Benjamini Y., and Hochberg Y. Controlling the False Discovery Rate - a Practical and Powerful Approach to Multiple Testing. J Roy Stat Soc B 57 (1995) 289-300
-
(1995)
J Roy Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
54
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey J.D. A direct approach to false discovery rates. J Roy Stat Soc B 64 (2002) 479-498
-
(2002)
J Roy Stat Soc B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
55
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey J.D., and Tibshirani R. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. USA 100 (2003) 9440-9445
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
56
-
-
0031041113
-
On Fisher's exact test for detecting gametic disequilibrium between DNA polymorphisms
-
Zapata C., and Alvarez G. On Fisher's exact test for detecting gametic disequilibrium between DNA polymorphisms. Ann. Hum. Genet. 61 (1997) 71-77
-
(1997)
Ann. Hum. Genet.
, vol.61
, pp. 71-77
-
-
Zapata, C.1
Alvarez, G.2
-
57
-
-
0037346501
-
MICROSATELLITE ANALYSER (MSA): A platform independent analysis tool for large microsatellite data sets
-
Dieringer D., and Schlotterer C. MICROSATELLITE ANALYSER (MSA): A platform independent analysis tool for large microsatellite data sets. Mol. Ecol. Notes 3 (2003) 167-169
-
(2003)
Mol. Ecol. Notes
, vol.3
, pp. 167-169
-
-
Dieringer, D.1
Schlotterer, C.2
-
58
-
-
0031024531
-
Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci
-
Chakraborty R., Kimmel M., Stivers D.N., Davison L.J., and Deka R. Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci. Proc. Natl. Acad. Sci. USA 94 (1997) 1041-1046
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1041-1046
-
-
Chakraborty, R.1
Kimmel, M.2
Stivers, D.N.3
Davison, L.J.4
Deka, R.5
-
59
-
-
27544474337
-
Ascertainment bias in studies of human genome-wide polymorphism
-
Clark A.G., Hubisz M.J., Bustamante C.D., Williamson S.H., and Nielsen R. Ascertainment bias in studies of human genome-wide polymorphism. Genome Res. 15 (2005) 1496-1502
-
(2005)
Genome Res.
, vol.15
, pp. 1496-1502
-
-
Clark, A.G.1
Hubisz, M.J.2
Bustamante, C.D.3
Williamson, S.H.4
Nielsen, R.5
-
60
-
-
33645474288
-
Biases and reconciliation in estimates of linkage disequilibrium in the human genome
-
Pe'er I., Chretien Y.R., de Bakker P.I.W., Barrett J.C., Daly M.J., and Altshuler D.M. Biases and reconciliation in estimates of linkage disequilibrium in the human genome. Am. J. Hum. Genet. 78 (2006) 588-603
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 588-603
-
-
Pe'er, I.1
Chretien, Y.R.2
de Bakker, P.I.W.3
Barrett, J.C.4
Daly, M.J.5
Altshuler, D.M.6
-
61
-
-
0028325745
-
Mutational processes of simple-sequence repeat loci in human populations
-
Di Rienzo A., Peterson A.C., Garza J.C., Valdes A.M., Slatkin M., and Freimer N.B. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91 (1994) 3166-3170
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 3166-3170
-
-
Di Rienzo, A.1
Peterson, A.C.2
Garza, J.C.3
Valdes, A.M.4
Slatkin, M.5
Freimer, N.B.6
-
62
-
-
0034079715
-
Heterogeneous mutation processes in human microsatellite DNA sequences
-
Ellegren H. Heterogeneous mutation processes in human microsatellite DNA sequences. Nat. Genet. 24 (2000) 400-402
-
(2000)
Nat. Genet.
, vol.24
, pp. 400-402
-
-
Ellegren, H.1
-
63
-
-
0036183651
-
Mutation patterns at dinucleotide microsatellite loci in humans
-
Huang Q.Y., Xu F.H., Shen H., Deng H.Y., Liu Y.J., Liu Y.Z., Li J.L., Recker R.R., and Deng H.W. Mutation patterns at dinucleotide microsatellite loci in humans. Am. J. Hum. Genet. 70 (2002) 625-634
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 625-634
-
-
Huang, Q.Y.1
Xu, F.H.2
Shen, H.3
Deng, H.Y.4
Liu, Y.J.5
Liu, Y.Z.6
Li, J.L.7
Recker, R.R.8
Deng, H.W.9
-
64
-
-
0034111151
-
The direction of microsatellite mutations is dependent upon allele length
-
Xu X., Peng M., and Fang Z. The direction of microsatellite mutations is dependent upon allele length. Nat. Genet. 24 (2000) 396-399
-
(2000)
Nat. Genet.
, vol.24
, pp. 396-399
-
-
Xu, X.1
Peng, M.2
Fang, Z.3
-
65
-
-
0029684888
-
Microsatellites are subject to directional evolution
-
Amos W., and Rubinstzein D.C. Microsatellites are subject to directional evolution. Nat. Genet. 12 (1996) 13-14
-
(1996)
Nat. Genet.
, vol.12
, pp. 13-14
-
-
Amos, W.1
Rubinstzein, D.C.2
-
66
-
-
0032717267
-
Markov Chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation
-
Cooper G., Burroughs N.J., Rand D.A., Rubinsztein D.C., and Amos W. Markov Chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation. Proc. Natl. Acad. Sci. USA 96 (1999) 11916-11921
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11916-11921
-
-
Cooper, G.1
Burroughs, N.J.2
Rand, D.A.3
Rubinsztein, D.C.4
Amos, W.5
-
67
-
-
0347231556
-
Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs
-
Kayser M., Roewer L., Hedman M., Henke L., Henke J., Brauer S., Kruger C., Krawczak M., Nagy M., Dobosz T., et al. Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs. Am. J. Hum. Genet. 66 (2000) 1580-1588
-
(2000)
Am. J. Hum. Genet.
, vol.66
, pp. 1580-1588
-
-
Kayser, M.1
Roewer, L.2
Hedman, M.3
Henke, L.4
Henke, J.5
Brauer, S.6
Kruger, C.7
Krawczak, M.8
Nagy, M.9
Dobosz, T.10
-
68
-
-
0031778070
-
Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat
-
Brinkmann B., Klintschar M., Neuhuber F., Huhne J., and Rolf B. Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat. Am. J. Hum. Genet. 62 (1998) 1408-1415
-
(1998)
Am. J. Hum. Genet.
, vol.62
, pp. 1408-1415
-
-
Brinkmann, B.1
Klintschar, M.2
Neuhuber, F.3
Huhne, J.4
Rolf, B.5
-
69
-
-
1042276698
-
Y-chromosomal microsatellite mutation rates: Differences in mutation rate between and within loci
-
Dupuy B.M., Stenersen M., Egeland T., and Olaisen B. Y-chromosomal microsatellite mutation rates: Differences in mutation rate between and within loci. Hum. Mutat. 23 (2004) 117-124
-
(2004)
Hum. Mutat.
, vol.23
, pp. 117-124
-
-
Dupuy, B.M.1
Stenersen, M.2
Egeland, T.3
Olaisen, B.4
-
70
-
-
0035869189
-
Mutation rates at two human Y-chromosomal microsatellite loci using small pool PCR techniques
-
Holtkemper U., Rolf B., Hohoff C., Forster P., and Brinkmannn B. Mutation rates at two human Y-chromosomal microsatellite loci using small pool PCR techniques. Hum. Mol. Genet. 10 (2001) 629-633
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 629-633
-
-
Holtkemper, U.1
Rolf, B.2
Hohoff, C.3
Forster, P.4
Brinkmannn, B.5
-
71
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg N.A., Pritchard J.K., Weber J.L., Cann H.M., Kidd K.K., Zhivotovsky L.A., and Feldman M.W. Genetic structure of human populations. Science 298 (2002) 2381-2385
-
(2002)
Science
, vol.298
, pp. 2381-2385
-
-
Rosenberg, N.A.1
Pritchard, J.K.2
Weber, J.L.3
Cann, H.M.4
Kidd, K.K.5
Zhivotovsky, L.A.6
Feldman, M.W.7
-
72
-
-
33747801064
-
The effective size of the Icelandic population and the prospects for LD mapping: Inference from unphased microsatellite markers
-
Bataillon T., Mailund T., Thorlacius S., Steingrimsson E., Rafnar T., Halldorsson M.M., Calian V., and Schierup M.H. The effective size of the Icelandic population and the prospects for LD mapping: Inference from unphased microsatellite markers. Eur. J. Hum. Genet. 14 (2006) 1044-1053
-
(2006)
Eur. J. Hum. Genet.
, vol.14
, pp. 1044-1053
-
-
Bataillon, T.1
Mailund, T.2
Thorlacius, S.3
Steingrimsson, E.4
Rafnar, T.5
Halldorsson, M.M.6
Calian, V.7
Schierup, M.H.8
-
73
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill W.G., and Robertson A. Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38 (1968) 226-231
-
(1968)
Theor. Appl. Genet.
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
74
-
-
0033678320
-
The D′ measure of overall gametic disequilibrium between pairs of multiallelic loci
-
Zapata C. The D′ measure of overall gametic disequilibrium between pairs of multiallelic loci. Evolution Int. J. Org. Evolution 54 (2000) 1809-1812
-
(2000)
Evolution Int. J. Org. Evolution
, vol.54
, pp. 1809-1812
-
-
Zapata, C.1
-
75
-
-
34248400069
-
Clinical applications of genome polymorphism scans
-
Weber J.L. Clinical applications of genome polymorphism scans. Biol Direct 1 (2006) 16
-
(2006)
Biol Direct
, vol.1
, pp. 16
-
-
Weber, J.L.1
-
76
-
-
26444577151
-
Whole genome association study of rheumatoid arthritis using 27 039 microsatellites
-
Tamiya G., Shinya M., Imanishi T., Ikuta T., Makino S., Okamoto K., Furugaki K., Matsumoto T., Mano S., Ando S., et al. Whole genome association study of rheumatoid arthritis using 27 039 microsatellites. Hum. Mol. Genet. 14 (2005) 2305-2321
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 2305-2321
-
-
Tamiya, G.1
Shinya, M.2
Imanishi, T.3
Ikuta, T.4
Makino, S.5
Okamoto, K.6
Furugaki, K.7
Matsumoto, T.8
Mano, S.9
Ando, S.10
-
77
-
-
42749090581
-
Genome-wide association mapping for essential hypertension with high-density microsatellite markers
-
Yatsu K., Hirawa N., Ogawa M., Soma M., Hata A., Nakao K., Ueshima H., Ogihara T., Tomoike H., Kimura A., et al. Genome-wide association mapping for essential hypertension with high-density microsatellite markers. J. Hypertens. 24 (2006) 55-56
-
(2006)
J. Hypertens.
, vol.24
, pp. 55-56
-
-
Yatsu, K.1
Hirawa, N.2
Ogawa, M.3
Soma, M.4
Hata, A.5
Nakao, K.6
Ueshima, H.7
Ogihara, T.8
Tomoike, H.9
Kimura, A.10
-
78
-
-
0742288585
-
The complex interplay among factors that influence allelic association
-
Zondervan K.T., and Cardon L.R. The complex interplay among factors that influence allelic association. Nat. Rev. Genet. 5 (2004) 89-100
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 89-100
-
-
Zondervan, K.T.1
Cardon, L.R.2
-
79
-
-
3843056691
-
Multiple rare Alleles contribute to low plasma levels of HDL cholesterol
-
Cohen J.C., Kiss R.S., Pertsemlidis A., Marcel Y.L., McPherson R., and Hobbs H.H. Multiple rare Alleles contribute to low plasma levels of HDL cholesterol. Science 305 (2004) 869-872
-
(2004)
Science
, vol.305
, pp. 869-872
-
-
Cohen, J.C.1
Kiss, R.S.2
Pertsemlidis, A.3
Marcel, Y.L.4
McPherson, R.5
Hobbs, H.H.6
-
80
-
-
0034969437
-
Are rare variants responsible for susceptibility to complex diseases?
-
Pritchard J.K. Are rare variants responsible for susceptibility to complex diseases?. Am. J. Hum. Genet. 69 (2001) 124-137
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 124-137
-
-
Pritchard, J.K.1
-
81
-
-
34047177395
-
Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL
-
Romeo S., Pennacchio L.A., Fu Y.X., Boerwinkle E., Tybjaerg-Hansen A., Hobbs H.H., and Cohen J.C. Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL. Nat. Genet. 39 (2007) 513-516
-
(2007)
Nat. Genet.
, vol.39
, pp. 513-516
-
-
Romeo, S.1
Pennacchio, L.A.2
Fu, Y.X.3
Boerwinkle, E.4
Tybjaerg-Hansen, A.5
Hobbs, H.H.6
Cohen, J.C.7
-
82
-
-
0033764912
-
Messages through bottlenecks: On the combined use of slow and fast evolving polymorphic markers on the human Y chromosome
-
de Knijff P. Messages through bottlenecks: On the combined use of slow and fast evolving polymorphic markers on the human Y chromosome. Am. J. Hum. Genet. 67 (2000) 1055-1061
-
(2000)
Am. J. Hum. Genet.
, vol.67
, pp. 1055-1061
-
-
de Knijff, P.1
-
83
-
-
1642326524
-
Using nuclear haplotypes with microsatellites to study gene flow between recently separated Cichlid species
-
Hey J., Won Y.J., Sivasundar A., Nielsen R., and Markert J.A. Using nuclear haplotypes with microsatellites to study gene flow between recently separated Cichlid species. Mol. Ecol. 13 (2004) 909-919
-
(2004)
Mol. Ecol.
, vol.13
, pp. 909-919
-
-
Hey, J.1
Won, Y.J.2
Sivasundar, A.3
Nielsen, R.4
Markert, J.A.5
-
84
-
-
4944227513
-
Precision and accuracy of divergence time estimates from STR and SNPSTR variation
-
Ramakrishnan U., and Mountain J.L. Precision and accuracy of divergence time estimates from STR and SNPSTR variation. Mol. Biol. Evol. 21 (2004) 1960-1971
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1960-1971
-
-
Ramakrishnan, U.1
Mountain, J.L.2
-
85
-
-
0035919696
-
Haplotype diversity and linkage disequilibrium at human G6PD: Recent origin of alleles that confer malarial resistance
-
Tishkoff S.A., Varkonyi R., Cahinhinan N., Abbes S., Argyropoulos G., Destro-Bisol G., Drousiotou A., Dangerfield B., Lefranc G., Loiselet J., et al. Haplotype diversity and linkage disequilibrium at human G6PD: Recent origin of alleles that confer malarial resistance. Science 293 (2001) 455-462
-
(2001)
Science
, vol.293
, pp. 455-462
-
-
Tishkoff, S.A.1
Varkonyi, R.2
Cahinhinan, N.3
Abbes, S.4
Argyropoulos, G.5
Destro-Bisol, G.6
Drousiotou, A.7
Dangerfield, B.8
Lefranc, G.9
Loiselet, J.10
-
86
-
-
1242284634
-
High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas
-
Zegura S.L., Karafet T.M., Zhivotovsky L.A., and Hammer M.F. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol. Biol. Evol. 21 (2004) 164-175
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 164-175
-
-
Zegura, S.L.1
Karafet, T.M.2
Zhivotovsky, L.A.3
Hammer, M.F.4
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