The evolution of evolvability in genetic linkage patterns

BioSystems

Volumn 69, Issue 2-3, 2003, Pages 115-126

  Pepper, John W ^a  

^a SANTA FE INSTITUTE   (United States)

Author keywords

Adaptation; Epistasis; Evolvability; Inversion; Modularity; Recombination

Indexed keywords

ADAPTATION; EVOLUTION; GENETICS;

ADAPTATION; CHROMOSOME; CONFERENCE PAPER; EVOLUTION; GENE INTERACTION; GENE ORDER; GENETIC LINKAGE; GENETIC RECOMBINATION; MATHEMATICS; SIMULATION;

EID: 0037402194     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0303-2647(02)00134-X     Document Type: Conference Paper

References (30)

1. Ancel L.W., Fontana W. Plasticity, evolvability and modularity in RNA. J. Exp. Zool. (Mol. Dev. Evol.). 288:2000;242-283.
2. Bäck, T., Schwefel, H.-P., 1991. A survey of evolution strategies. In: Belew, R.K., Booker, L.B. (Eds.), Proceedings of the Fourth International Conference on Genetic Algorithms. Morgan Kaufmann, San Mateo, CA, pp. 2-9.
3. Bodmer W.F., Parsons P.A. Linkage and recombination in evolution. Adv. Genet. 11:1962;1-100.
4. Casjens S., Hatfull G., Hendrix R. Evolution of dsDNA tailed bacteriophage genomes. Virology. 3:1992;383-397.
5. Clarke C.A., Sheppard P.M. Super-genes and mimicry. Heredity. 14:1960;175-185.
6. Dandekar T., Snel B., Huynen M., Bork P. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci. 23:1998;324-328.
7. Dawkins, R., 1989. The evolution of evolvability. In: Langton, C. (Ed.), Artificial Life. Addison Wesley, Santa Fe, NM, pp. 201-220.
8. Feldman M.W., Otto S.P., Christiansen F.B. Population genetic perspectives on the evolution of recombination. Annu. Rev. Genet. 30:1997;261-295.
9. Fisher, R.A., 1930. The Genetical Theory of Natural Selection. Clarendon Press, Oxford.
10. Ford, E.B., 1975. Ecological Genetics, 4th ed. Chapman & Hall, London.
11. Futuyma, D.J., 1998. Evolutionary Biology, 3rd ed. Sinauer, Sunderland, MA.
12. Goldberg, D., 1989. Genetic Algorithms in Search, Optimization, and Machine Learning. Addison Wesley, Reading, MA.
13. Goldberg D.E., Bridges C.L. An analysis of a reordering operator on a GA-hard problem. Biol. Cybern. 62:1990;397-405.
14. Hartwell L.H., Hopfield J.J., Leibler S., Murray A.W. From molecular to modular biology. Nature. 402:1999;47-52.
15. Holland, J.H., 1975. Adaptation in Natural and Artificial Systems. MIT Press, Cambridge, MA.
16. Hughes, A.L., 1999. Adaptive Evolution of Genes and Genomes. Oxford University Press, Oxford.
17. Jones J.S., Leith B.H., Rawlings P. Polymorphism in Cepaea: a problem with too many solutions? Annu. Rev. Ecol. Syst. 8:1977;109-143.
18. Kargupta H., Bandyopadhyay S. A perspective on the foundation and evolution of the linkage learning genetic algorithms. Comput. Methods Appl. Mech. Eng. 186:2000;269-294.
19. Kimura M. A model of a genetic system which leads to closer linkage by natural selection. Evolution. 10:1956;278-287.
20. Kirschner M., Gerhart J. Evolvability. Proc. Natl. Acad. Sci. U.S.A. 95:1998;8420-8427.
21. Lewontin R.C. The interaction of selection and linkage. II. Optimum models. Genetics. 50:1964;757-782.
22. Mitchell, M., 1996. An Introduction to Genetic Algorithms. MIT Press, Cambridge, MA.
23. Pepper, J.W., 2000. The evolution of modularity in genome architecture. In: Maley, C.C., Boudreau, E. (Eds.), Proceedings of the Artificial Life 7 Workshop, pp. 9-12.
24. Peters, A.D., Lively, C.M., 2000. Epistasis and the maintenance of sex. In: Wolf, J.B., Brodie, E.D., Wade, M.J. (Eds.), Epistasis and the Evolutionary Process. Oxford University Press, Oxford, pp. 99-112.
25. Stadler P.F., Seitz R., Wagner G.P. Population dependent Fourier decomposition of fitness landscapes over recombination spaces: evolvability of complex characters. Bull. Math. Biol. 62:2000;399-428.
26. Vermeij, G.J., 1996. Adaptation of clades: resistance and response. In: Rose, M.R., Lauder, G.V. (Eds.), Adaptation. Academic Press, San Diego, CA, pp. 363-380.
27. Wagner, G.P., 1995. Adaptation and the modular design of organisms. In: Moran, F., Moreno, A., Merelo, J., Cachon, P. (Eds.), Proceedings of the Third European Conference on Artificial Life, Advances in Artificial Life. Springer, New York, pp. 317-328.
28. Wagner G.P., Altenberg L. Complex adaptations and the evolution of evolvability. Evolution. 50:1996;967-976.
29. West-Eberhard M.J. Evolution in the light of developmental and cell biology, and vice versa. Proc. Natl. Acad. Sci. U.S.A. 95:1998;8417-8419.
30. Zhang J., Nei M. Evolution of Antennapedia-class homeobox genes. Genetics. 142:1996;295-303.