-
1
-
-
27744571119
-
Prediction of protein function from structure: Insights from methods for the detection of local structural similarities
-
Najmanovich RJ, Torrance J, Thornton J. Prediction of protein function from structure: Insights from methods for the detection of local structural similarities. BioTechniques 2005;38:847-851.
-
(2005)
BioTechniques
, vol.38
, pp. 847-851
-
-
Najmanovich, R.J.1
Torrance, J.2
Thornton, J.3
-
2
-
-
14744305761
-
Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families
-
Torrance J, Bartlett G, Porter C, Thornton J. Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families. J Mol Biol 2005;347:565-581.
-
(2005)
J Mol Biol
, vol.347
, pp. 565-581
-
-
Torrance, J.1
Bartlett, G.2
Porter, C.3
Thornton, J.4
-
4
-
-
0042702356
-
Metal ions in biological systems
-
Glusker JP, Katz AB. Metal ions in biological systems. Rigaku J 1999;16:8-16.
-
(1999)
Rigaku J
, vol.16
, pp. 8-16
-
-
Glusker, J.P.1
Katz, A.B.2
-
5
-
-
0035094475
-
Geometry of metal-ligand interactions in proteins
-
Harding M. Geometry of metal-ligand interactions in proteins. Acta Crystallogr D Biol Crystallogr 2001;57:401-411.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 401-411
-
-
Harding, M.1
-
6
-
-
4644355809
-
The architecture of metal coordination groups in proteins
-
Harding M. The architecture of metal coordination groups in proteins. Acta Crystallogr D Biol Crystallogr 2004;60:849-859.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 849-859
-
-
Harding, M.1
-
7
-
-
0037366128
-
Principles governing Mg, Ca, and Zn binding and selectivity in proteins
-
Dudev T, Lim C. Principles governing Mg, Ca, and Zn binding and selectivity in proteins. Chem Rev 2003;103:773-788.
-
(2003)
Chem Rev
, vol.103
, pp. 773-788
-
-
Dudev, T.1
Lim, C.2
-
8
-
-
0035957509
-
Conformational flexibility in T4 endonuclease VII revealed by crystallography: Implications for substrate binding and cleavage
-
Raaijmakers H, Toro I, Birkenbihl R, Kemper B, Suck D. Conformational flexibility in T4 endonuclease VII revealed by crystallography: implications for substrate binding and cleavage. J Mol Biol 2001;308:311-323.
-
(2001)
J Mol Biol
, vol.308
, pp. 311-323
-
-
Raaijmakers, H.1
Toro, I.2
Birkenbihl, R.3
Kemper, B.4
Suck, D.5
-
10
-
-
0026409654
-
Calcium-binding sites in proteins: A structural perspective
-
McPhalen C, Strynadka N, James M. Calcium-binding sites in proteins: a structural perspective. Adv Protein Chem 1991;42:77-144.
-
(1991)
Adv Protein Chem
, vol.42
, pp. 77-144
-
-
McPhalen, C.1
Strynadka, N.2
James, M.3
-
11
-
-
0345114077
-
Hard and soft acids and bases
-
Pearson R. Hard and soft acids and bases. J Am Chem Soc 1963;85:3533-3539.
-
(1963)
J Am Chem Soc
, vol.85
, pp. 3533-3539
-
-
Pearson, R.1
-
13
-
-
5144226338
-
The DxDxDG motif for calcium binding: Multiple structural contexts and implications for evolution
-
Rigden D, Galperin M. The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution. J Mol Biol 2004;343:971-984.
-
(2004)
J Mol Biol
, vol.343
, pp. 971-984
-
-
Rigden, D.1
Galperin, M.2
-
15
-
-
17844384785
-
Structural and catalytic diversity within the amidohydrolase superfamily
-
Seibert C, Raushel F. Structural and catalytic diversity within the amidohydrolase superfamily. Biochemistry 2005;44:6383-6391.
-
(2005)
Biochemistry
, vol.44
, pp. 6383-6391
-
-
Seibert, C.1
Raushel, F.2
-
16
-
-
0037439997
-
Structural classification of zinc fingers: Survey and summary
-
Krishna S, Majumdar I, Grishin N. Structural classification of zinc fingers: survey and summary. Nucleic Acids Res 2003;31:532-550.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 532-550
-
-
Krishna, S.1
Majumdar, I.2
Grishin, N.3
-
17
-
-
10844290876
-
Molego-based definition of the architecture and specificity of metal-binding sites
-
Schein C, Zhou B, Oezguen N, Mathura V, Braun W. Molego-based definition of the architecture and specificity of metal-binding sites. Proteins 2005;58:200-210.
-
(2005)
Proteins
, vol.58
, pp. 200-210
-
-
Schein, C.1
Zhou, B.2
Oezguen, N.3
Mathura, V.4
Braun, W.5
-
18
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang G, Dunbrack R, Jr. PISCES: a protein sequence culling server. Bioinformatics 2003;19:1589-1591.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack Jr, R.2
-
19
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
Berman H, Henrick K, Nakamura H, Markley J. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res 2007;35:D301-D303.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.4
-
20
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
21
-
-
13444272079
-
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
-
Database Issue
-
Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Res 2005;33:D247-D251. Database Issue.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pearl, F.1
Todd, A.2
Sillitoe, I.3
Dibley, M.4
Redfern, O.5
Lewis, T.6
Bennett, C.7
Marsden, R.8
Grant, A.9
Lee, D.10
Akpor, A.11
Maibaum, M.12
Harrison, A.13
Dallman, T.14
Reeves, G.15
Diboun, I.16
Addou, S.17
Lise, S.18
Johnston, C.19
Sillero, A.20
Thornton, J.21
Orengo, C.22
more..
-
22
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin A, Brenner S, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.1
Brenner, S.2
Hubbard, T.3
Chothia, C.4
-
23
-
-
0032169688
-
PQS: A protein quaternary structure file server
-
Henrick K, Thornton J. PQS: a protein quaternary structure file server. Trends Biochem Sci 1998;23:358-361.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 358-361
-
-
Henrick, K.1
Thornton, J.2
-
24
-
-
0141850386
-
An algorithm for constraint-based structural template matching: Application to 3D templates with statistical analysis
-
Barker J, Thornton J. An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. Bioinformatics 2003;19:1644-1649.
-
(2003)
Bioinformatics
, vol.19
, pp. 1644-1649
-
-
Barker, J.1
Thornton, J.2
-
25
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
The Universal Protein Resource (UniProt). Nucleic Acids Res 2007;35:D193-D197.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
-
26
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E, Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr 2004;60:2256-2268.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
27
-
-
0345701247
-
Structure and ligand binding of carbohydrate-binding module CsCBM6-3 reveals similarities with fucose-specific lectins and "galactose-binding" domains
-
Boraston A, Notenboom V, Warren R, Kilburn D, Rose D, Davies G. Structure and ligand binding of carbohydrate-binding module CsCBM6-3 reveals similarities with fucose-specific lectins and "galactose-binding" domains. J Mol Biol 2003;327:659-669.
-
(2003)
J Mol Biol
, vol.327
, pp. 659-669
-
-
Boraston, A.1
Notenboom, V.2
Warren, R.3
Kilburn, D.4
Rose, D.5
Davies, G.6
-
28
-
-
0035850792
-
Crystal structures of penicillin acylase enzyme-substrate complexes: Structural insights into the catalytic mechanism
-
McVey C, Walsh M, Dodson G, Wilson K, Brannigan J. Crystal structures of penicillin acylase enzyme-substrate complexes: structural insights into the catalytic mechanism. J Mol Biol 2001;313:139-150.
-
(2001)
J Mol Biol
, vol.313
, pp. 139-150
-
-
McVey, C.1
Walsh, M.2
Dodson, G.3
Wilson, K.4
Brannigan, J.5
-
29
-
-
0035955653
-
The iota-carrageenase of Alteromonas fortis. A beta-helix fold-containing enzyme for the degradation of a highly polyanionic polysaccharide
-
Michel G, Chantalat L, Fanchon E, Henrissat B, Kloareg B, Dideberg O. The iota-carrageenase of Alteromonas fortis. A beta-helix fold-containing enzyme for the degradation of a highly polyanionic polysaccharide. J Biol Chem 2001;276:40202-40209.
-
(2001)
J Biol Chem
, vol.276
, pp. 40202-40209
-
-
Michel, G.1
Chantalat, L.2
Fanchon, E.3
Henrissat, B.4
Kloareg, B.5
Dideberg, O.6
-
30
-
-
0036304348
-
Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 Å resolution and alpha-amylase 2 (TVAII) at 2.3 Å resolution
-
Kamitori S, Abe A, Ohtaki A, Kaji A, Tonozuka T, Sakano Y. Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 Å resolution and alpha-amylase 2 (TVAII) at 2.3 Å resolution. J Mol Biol 2002;318:443-453.
-
(2002)
J Mol Biol
, vol.318
, pp. 443-453
-
-
Kamitori, S.1
Abe, A.2
Ohtaki, A.3
Kaji, A.4
Tonozuka, T.5
Sakano, Y.6
-
31
-
-
0035965125
-
Substrate specificity determinants of human macrophage elastase (MMP-12) based on the 1.1 Å crystal structure
-
Lang R, Kocourek A, Braun M, Tschesche H, Huber R, Bode W, Maskos K. Substrate specificity determinants of human macrophage elastase (MMP-12) based on the 1.1 Å crystal structure. J Mol Biol 2001;312:731-742.
-
(2001)
J Mol Biol
, vol.312
, pp. 731-742
-
-
Lang, R.1
Kocourek, A.2
Braun, M.3
Tschesche, H.4
Huber, R.5
Bode, W.6
Maskos, K.7
-
32
-
-
0037832539
-
Impact of the physical and chemical environment on the molecular structure of Coprinus cinereus peroxidase
-
Houborg K, Harris P, Petersen J, Rowland P, Poulsen J, Schneider P, Vind J, Larsen S. Impact of the physical and chemical environment on the molecular structure of Coprinus cinereus peroxidase. Acta Crystallogr D Biol Crystallogr 2003;59:989-996.
-
(2003)
Acta Crystallogr D Biol Crystallogr
, vol.59
, pp. 989-996
-
-
Houborg, K.1
Harris, P.2
Petersen, J.3
Rowland, P.4
Poulsen, J.5
Schneider, P.6
Vind, J.7
Larsen, S.8
-
33
-
-
0027516857
-
Refined 1.6 Å resolution crystal structure of the complex formed between porcine beta-trypsin and MCTI-A, a trypsin inhibitor of the squash family. Detailed comparison with bovine beta-trypsin and its complex
-
Huang Q, Liu S, Tang Y. Refined 1.6 Å resolution crystal structure of the complex formed between porcine beta-trypsin and MCTI-A, a trypsin inhibitor of the squash family. Detailed comparison with bovine beta-trypsin and its complex. J Mol Biol 1993;229:1022-1036.
-
(1993)
J Mol Biol
, vol.229
, pp. 1022-1036
-
-
Huang, Q.1
Liu, S.2
Tang, Y.3
-
34
-
-
0242490546
-
Structural framework of fructosyl transfer in Bacillus subtilis levansucrase
-
Meng G, Futterer K. Structural framework of fructosyl transfer in Bacillus subtilis levansucrase. Nat Struct Biol 2003;10:935-941.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 935-941
-
-
Meng, G.1
Futterer, K.2
-
35
-
-
0041347814
-
Structure and energetics of protein-protein interactions: The role of conformational heterogeneity in OMTKY3 binding to serine proteases
-
Horn J, Ramaswamy S, Murphy K. Structure and energetics of protein-protein interactions: the role of conformational heterogeneity in OMTKY3 binding to serine proteases. J Mol Biol 2003;331:497-508.
-
(2003)
J Mol Biol
, vol.331
, pp. 497-508
-
-
Horn, J.1
Ramaswamy, S.2
Murphy, K.3
-
36
-
-
0039710379
-
Structure of the PH domain and Btk motif from Bruton's tyrosine kinase: Molecular explanations for X-linked agammaglobulinaemia
-
Hyvonen M, Saraste M. Structure of the PH domain and Btk motif from Bruton's tyrosine kinase: molecular explanations for X-linked agammaglobulinaemia. EMBO J 1997;16:3396-3404.
-
(1997)
EMBO J
, vol.16
, pp. 3396-3404
-
-
Hyvonen, M.1
Saraste, M.2
-
37
-
-
0037084112
-
Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate
-
Zharkov D, Golan G, Gilboa R, Fernandes A, Gerchman S, Kycia J, Rieger R, Grollman A, Shoham G. Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate. EMBO J 2002;21:789-800.
-
(2002)
EMBO J
, vol.21
, pp. 789-800
-
-
Zharkov, D.1
Golan, G.2
Gilboa, R.3
Fernandes, A.4
Gerchman, S.5
Kycia, J.6
Rieger, R.7
Grollman, A.8
Shoham, G.9
-
38
-
-
0037072885
-
Structural basis for the NAD-dependent deacetylase mechanism of Sir2
-
Chang J, Kim H, Hwang K, Lee J, Jackson S, Bell S, Cho Y. Structural basis for the NAD-dependent deacetylase mechanism of Sir2. J Biol Chem 2002;277:34489-34498.
-
(2002)
J Biol Chem
, vol.277
, pp. 34489-34498
-
-
Chang, J.1
Kim, H.2
Hwang, K.3
Lee, J.4
Jackson, S.5
Bell, S.6
Cho, Y.7
-
39
-
-
0037452898
-
Amino acid residues in the nicotinamide binding site contribute to catalysis by horse liver alcohol dehydrogenase
-
Rubach J, Plapp B. Amino acid residues in the nicotinamide binding site contribute to catalysis by horse liver alcohol dehydrogenase. Biochemistry 2003;42:2907-2915.
-
(2003)
Biochemistry
, vol.42
, pp. 2907-2915
-
-
Rubach, J.1
Plapp, B.2
-
40
-
-
1842526443
-
Crystallographic study of inhibitors of tRNA-guanine transglycosylase suggests a new structure-based pharmacophore for virtual screening
-
Brenk R, Meyer E, Reuter K, Stubbs M, Garcia G, Diederich F, Klebe G. Crystallographic study of inhibitors of tRNA-guanine transglycosylase suggests a new structure-based pharmacophore for virtual screening. J Mol Biol 2004;338:55-75.
-
(2004)
J Mol Biol
, vol.338
, pp. 55-75
-
-
Brenk, R.1
Meyer, E.2
Reuter, K.3
Stubbs, M.4
Garcia, G.5
Diederich, F.6
Klebe, G.7
-
41
-
-
0033954256
-
The Protein Data Bank
-
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat T, Weissig H, Shindyalov I, Bourne P. The Protein Data Bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
42
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J, Higgins D, Gibson T. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
43
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff J. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 1992;89:10915-10919.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.2
-
44
-
-
0032776835
-
X-ray structure of human stromelysin catalytic domain complexed with nonpeptide inhibitors: Implications for inhibitor selectivity
-
Pavlovsky A, Williams M, Ye Q, Ortwine D, Purchase 2nd C, White A, Dhanaraj V, Roth B, Johnson L, Hupe D, Humblet C, Blundell T. X-ray structure of human stromelysin catalytic domain complexed with nonpeptide inhibitors: implications for inhibitor selectivity. Protein Sci 1999;8:1455-1462.
-
(1999)
Protein Sci
, vol.8
, pp. 1455-1462
-
-
Pavlovsky, A.1
Williams, M.2
Ye, Q.3
Ortwine, D.4
Purchase 2nd, C.5
White, A.6
Dhanaraj, V.7
Roth, B.8
Johnson, L.9
Hupe, D.10
Humblet, C.11
Blundell, T.12
-
46
-
-
33750928844
-
Structural zinc sites
-
Messerschmidt A, Huber R, Wieghardt K, Pouos T, editors, Chichester: John Wiley & Sons
-
Auld D. Structural zinc sites. In: Messerschmidt A, Huber R, Wieghardt K, Pouos T, editors. Handbook of metalloproteins, Vol. 3. Chichester: John Wiley & Sons, 2004, pp 403-415.
-
(2004)
Handbook of metalloproteins
, vol.3
, pp. 403-415
-
-
Auld, D.1
-
47
-
-
0032953164
-
Metallothionein: An intracellular protein to protect against cadmium toxicity
-
Klaassen C, Liu J, Choudhuri S. Metallothionein: an intracellular protein to protect against cadmium toxicity. Annu Rev Pharmacol Toxicol 1999;39:267-294.
-
(1999)
Annu Rev Pharmacol Toxicol
, vol.39
, pp. 267-294
-
-
Klaassen, C.1
Liu, J.2
Choudhuri, S.3
-
48
-
-
0030586824
-
Crystal structure of a eukaryotic (pea seedling) copper-containing amine oxidase at 2.2 A resolution
-
Kumar V, Dooley D, Freeman H, Guss J, Harvey I, McGuirl M, Wilce M, Zubak V. Crystal structure of a eukaryotic (pea seedling) copper-containing amine oxidase at 2.2 A resolution. Structure 1996;4:943-955.
-
(1996)
Structure
, vol.4
, pp. 943-955
-
-
Kumar, V.1
Dooley, D.2
Freeman, H.3
Guss, J.4
Harvey, I.5
McGuirl, M.6
Wilce, M.7
Zubak, V.8
-
49
-
-
0035937857
-
Crystal structure of alkaline phosphatase from human placenta at 1.8 A resolution. Implication for a substrate specificity
-
Le Du M, Stigbrand T, Taussig M, Menez A, Stura E. Crystal structure of alkaline phosphatase from human placenta at 1.8 A resolution. Implication for a substrate specificity. J Biol Chem 2001;276:9158-9165.
-
(2001)
J Biol Chem
, vol.276
, pp. 9158-9165
-
-
Le Du, M.1
Stigbrand, T.2
Taussig, M.3
Menez, A.4
Stura, E.5
-
50
-
-
0032924354
-
The crystal structure of a complex of p11 with the annexin II N-terminal peptide
-
Rety S, Sopkova J, Renouard M, Osterloh D, Gerke V, Tabaries S, Russo-Marie F, Lewit-Bentley A. The crystal structure of a complex of p11 with the annexin II N-terminal peptide. Nat Struct Biol 1999;6:89-95.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 89-95
-
-
Rety, S.1
Sopkova, J.2
Renouard, M.3
Osterloh, D.4
Gerke, V.5
Tabaries, S.6
Russo-Marie, F.7
Lewit-Bentley, A.8
-
51
-
-
0028977970
-
Crystal structure of Escherichia coli QOR quinone oxidoreductase complexed with NADPH
-
Thorn J, Barton J, Dixon N, Ollis D, Edwards K. Crystal structure of Escherichia coli QOR quinone oxidoreductase complexed with NADPH. J Mol Biol 1995;249:785-799.
-
(1995)
J Mol Biol
, vol.249
, pp. 785-799
-
-
Thorn, J.1
Barton, J.2
Dixon, N.3
Ollis, D.4
Edwards, K.5
-
52
-
-
0033179802
-
The geometry of metal-ligand interactions relevant to proteins
-
Harding M. The geometry of metal-ligand interactions relevant to proteins. Acta Crystallogr D Biol Crystallogr 1999;55(Part 8):1432-1443.
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, Issue.PART 8
, pp. 1432-1443
-
-
Harding, M.1
-
53
-
-
0033937430
-
The geometry of metal-ligand interactions relevant to proteins. II. Angles at the metal atom, additional weak metal-donor interactions
-
Harding M. The geometry of metal-ligand interactions relevant to proteins. II. Angles at the metal atom, additional weak metal-donor interactions. Acta Crystallogr D Biol Crystallogr 2000;56(Part 7):857-867.
-
(2000)
Acta Crystallogr D Biol Crystallogr
, vol.56
, Issue.PART 7
, pp. 857-867
-
-
Harding, M.1
-
54
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov I, Bourne P. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng 1998;11:739-747.
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.1
Bourne, P.2
-
55
-
-
33845230241
-
Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry
-
Dupont C, Yang S, Palenik B, Bourne P. Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry. Proc Natl Acad Sci USA 2006;103:17822-17827.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17822-17827
-
-
Dupont, C.1
Yang, S.2
Palenik, B.3
Bourne, P.4
-
56
-
-
0035175268
-
PALI-a database of Phylogeny and ALIgnment of homologous protein structures
-
Balaji S, Sujatha S, Kumar S, Srinivasan N. PALI-a database of Phylogeny and ALIgnment of homologous protein structures. Nucleic Acids Res 2001;29:61-65.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 61-65
-
-
Balaji, S.1
Sujatha, S.2
Kumar, S.3
Srinivasan, N.4
-
57
-
-
2942522713
-
PASS2: An automated database of protein alignments organised as structural superfamilies
-
Bhaduri A, Pugalenthi G, Sowdhamini R. PASS2: an automated database of protein alignments organised as structural superfamilies. BMC Bioinformatics 2004;5:35.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 35
-
-
Bhaduri, A.1
Pugalenthi, G.2
Sowdhamini, R.3
|