PALI - A database of phylogeny and alignment of homologous protein structures

Nucleic Acids Research

Volumn 29, Issue 1, 2001, Pages 61-65

  Balaji, S ^a   Sujatha, S ^a   Kumar, S Sai Chetan ^a,b   Srinivasan, N ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b INDIAN INSTITUTE OF TECHNOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; CALCULATION; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; GENETIC PROCEDURES; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; ONLINE SYSTEM; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

EID: 0035175268     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.1.61     Document Type: Article

References (32)

1. The FSSP database of structurally aligned protein fold families
2. SCOP: A structural classification of proteins database for the investigation of sequences and structures
3. CATH-a hierarchic classification of protein domain structures
4. How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
5. The relation between the divergence of sequence and structure in proteins
6. Tertiary structural constraints on protein evolutionary diversity: Templates, key residues and structure prediction
7. Knowledge-based protein modeling
8. Advances in comparative protein-structure modelling
9. Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
10. 100,000 protein structures for the biologist
11. An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure
12. Similar amino acid sequences: Chance or common ancestry?
13. Protein structure prediction in the postgenomic era
14. N Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
15. Database of homology-derived protein structures and the structural meaning of sequence alignment
16. Derivation of rules for comparative protein modeling from a database of protein structure alignments
17. A databank (3D-ali) collecting related protein sequences and structures
18. LPFC: An Internet library of protein family core structures
19. HOMSTRAD: A database of protein structure alignments for homologous families
20. SCOP: A structural classification of protein database
21. Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels
22. Exploring structural homology of proteins
23. Detecting structural similarities: A user's guide
24. Molecular anatomy: Phyletic relationships derived from three-dimensional structures of proteins
25. Phylogenetic relationships from three-dimensional protein structures
26. Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
27. A variable gap penalty function and feature weights for protein 3-D structure comparisons
28. A unified structural framework for sequence comparison and structure comparison
29. RasMol: Biomolecular graphics for all
30. The Protein Data Bank