-
1
-
-
0034058625
-
The CATH Dictionary of Homologous Superfamilies (DHS): A consensus approach for identifying distant structural homologues
-
Bray,J.E., Todd,A.E., Pearl,F.M., Thornton,J.M. and Orengo,C.A. (2000) The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues. Protein Eng., 13, 153-165.
-
(2000)
Protein Eng.
, vol.13
, pp. 153-165
-
-
Bray, J.E.1
Todd, A.E.2
Pearl, F.M.3
Thornton, J.M.4
Orengo, C.A.5
-
2
-
-
0024349252
-
Protein structure alignment
-
Taylor,W. and Orengo,C. (1989) Protein structure alignment. J. Mol. Biol., 208, 1-22.
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 1-22
-
-
Taylor, W.1
Orengo, C.2
-
3
-
-
0032945191
-
CORA - Topological fingerprints for protein structural families
-
Orengo,C. (1999) CORA - topological fingerprints for protein structural families. Protein Sci., 8, 699-715.
-
(1999)
Protein Sci.
, vol.8
, pp. 699-715
-
-
Orengo, C.1
-
4
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
0345865009
-
GenBank: Update
-
Benson,D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2004) GenBank: update. Nucleic Acids Res., 32, 23-26.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 23-26
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
6
-
-
0033963089
-
The ENZYME database in 2000
-
Bairoch,A. (2000) The ENZYME database in 2000. Nucleic Acids Res., 28, 304-305.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 304-305
-
-
Bairoch, A.1
-
7
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa,M. and Goto,S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
8
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Gene Ontology Consortium
-
Harris,M.A., Clark,J., Ireland,A., Lomax,J., Ashburner,M., Foulger,R., Eilbeck,K., Lewis,S., Marshall,B., Mungall,C. et al. (2004) Gene Ontology Consortium. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
-
9
-
-
0032509105
-
Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
-
Park,J., Karplus,K., Barrett,C., Hughey,R., Haussler,D., Hubbard,T. and Chothia,C. (1998) Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J. Mol. Biol., 284, 1201-1210.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1201-1210
-
-
Park, J.1
Karplus, K.2
Barrett, C.3
Hughey, R.4
Haussler, D.5
Hubbard, T.6
Chothia, C.7
-
10
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
Gough,J., Karplus,K., Hughey,R. and Chothia,C. (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol., 313, 903-919.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
11
-
-
0036145551
-
The CATH extended protein-family database: Providing structural annotations for genome sequences
-
Pearl,F.M., Lee,D., Bray,J.E., Buchan,D.W., Shepherd,A.J. and Orengo,C.A. (2002) The CATH extended protein-family database: providing structural annotations for genome sequences. Protein Sci., 11 233-244.
-
(2002)
Protein Sci.
, vol.11
, pp. 233-244
-
-
Pearl, F.M.1
Lee, D.2
Bray, J.E.3
Buchan, D.W.4
Shepherd, A.J.5
Orengo, C.A.6
-
13
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
14
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
15
-
-
13444278480
-
Identification and distribution of protein families in 120 completed genomes using Gene3D
-
in press
-
Lee,D., Grant,A., Marsden,R. and Orengo,C. (2004) Identification and distribution of protein families in 120 completed genomes using Gene3D. Proteins, in press.
-
(2004)
Proteins
-
-
Lee, D.1
Grant, A.2
Marsden, R.3
Orengo, C.4
-
16
-
-
9144257886
-
The Pfam protein families database
-
Bateman,A., Coin,L., Durbin,R., Finn,R.D., Hollich,V., Griffiths-Jones,S., Khanna,A., Marshall,M., Moxon,S., Sonnhammer,E.L.L. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.L.10
-
17
-
-
1042298811
-
Evolution of protein families and bacterial genome size
-
Ranea,J.A., Buchan,D.W., Thornton,J.M. and Orengo,C.A. (2004) Evolution of protein families and bacterial genome size. J. Mol. Biol. 336, 871-887.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 871-887
-
-
Ranea, J.A.1
Buchan, D.W.2
Thornton, J.M.3
Orengo, C.A.4
-
18
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo,C.A., Jones,D.T. and Thornton,J.M. (1994) Protein superfamilies and domain superfolds. Nature, 372, 631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
19
-
-
0141840833
-
Recognizing the fold of a protein structure
-
Harrison,A., Pearl,F., Sillitoe,I., Slidel,T., Mott,R., Thornton,J. and Orengo,C. (2003) Recognizing the fold of a protein structure. Bioinformatics, 19, 1748-1759.
-
(2003)
Bioinformatics
, vol.19
, pp. 1748-1759
-
-
Harrison, A.1
Pearl, F.2
Sillitoe, I.3
Slidel, T.4
Mott, R.5
Thornton, J.6
Orengo, C.7
|