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Volumn 33, Issue DATABASE ISS., 2005, Pages

The CATH domain structure database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; CATH DOMAIN STRUCTURE DATABASE; CLASSIFICATION; COMPUTER PROGRAM; GENBANK; GENE LIBRARY; INTERNET; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN STRUCTURE; RELIABILITY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS; VALIDATION PROCESS; BIOINFORMATICS; CATH DATABASE; CLINICAL PROTOCOL; GENOME ANALYSIS; INFORMATION PROCESSING;

EID: 13444272079     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki024     Document Type: Article
Times cited : (231)

References (19)
  • 1
    • 0034058625 scopus 로고    scopus 로고
    • The CATH Dictionary of Homologous Superfamilies (DHS): A consensus approach for identifying distant structural homologues
    • Bray,J.E., Todd,A.E., Pearl,F.M., Thornton,J.M. and Orengo,C.A. (2000) The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues. Protein Eng., 13, 153-165.
    • (2000) Protein Eng. , vol.13 , pp. 153-165
    • Bray, J.E.1    Todd, A.E.2    Pearl, F.M.3    Thornton, J.M.4    Orengo, C.A.5
  • 2
    • 0024349252 scopus 로고
    • Protein structure alignment
    • Taylor,W. and Orengo,C. (1989) Protein structure alignment. J. Mol. Biol., 208, 1-22.
    • (1989) J. Mol. Biol. , vol.208 , pp. 1-22
    • Taylor, W.1    Orengo, C.2
  • 3
    • 0032945191 scopus 로고    scopus 로고
    • CORA - Topological fingerprints for protein structural families
    • Orengo,C. (1999) CORA - topological fingerprints for protein structural families. Protein Sci., 8, 699-715.
    • (1999) Protein Sci. , vol.8 , pp. 699-715
    • Orengo, C.1
  • 6
    • 0033963089 scopus 로고    scopus 로고
    • The ENZYME database in 2000
    • Bairoch,A. (2000) The ENZYME database in 2000. Nucleic Acids Res., 28, 304-305.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 304-305
    • Bairoch, A.1
  • 7
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa,M. and Goto,S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 9
    • 0032509105 scopus 로고    scopus 로고
    • Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
    • Park,J., Karplus,K., Barrett,C., Hughey,R., Haussler,D., Hubbard,T. and Chothia,C. (1998) Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J. Mol. Biol., 284, 1201-1210.
    • (1998) J. Mol. Biol. , vol.284 , pp. 1201-1210
    • Park, J.1    Karplus, K.2    Barrett, C.3    Hughey, R.4    Haussler, D.5    Hubbard, T.6    Chothia, C.7
  • 10
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough,J., Karplus,K., Hughey,R. and Chothia,C. (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol., 313, 903-919.
    • (2001) J. Mol. Biol. , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 11
    • 0036145551 scopus 로고    scopus 로고
    • The CATH extended protein-family database: Providing structural annotations for genome sequences
    • Pearl,F.M., Lee,D., Bray,J.E., Buchan,D.W., Shepherd,A.J. and Orengo,C.A. (2002) The CATH extended protein-family database: providing structural annotations for genome sequences. Protein Sci., 11 233-244.
    • (2002) Protein Sci. , vol.11 , pp. 233-244
    • Pearl, F.M.1    Lee, D.2    Bray, J.E.3    Buchan, D.W.4    Shepherd, A.J.5    Orengo, C.A.6
  • 14
    • 0032438987 scopus 로고    scopus 로고
    • Hidden Markov models for detecting remote protein homologies
    • Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
    • (1998) Bioinformatics , vol.14 , pp. 846-856
    • Karplus, K.1    Barrett, C.2    Hughey, R.3
  • 15
    • 13444278480 scopus 로고    scopus 로고
    • Identification and distribution of protein families in 120 completed genomes using Gene3D
    • in press
    • Lee,D., Grant,A., Marsden,R. and Orengo,C. (2004) Identification and distribution of protein families in 120 completed genomes using Gene3D. Proteins, in press.
    • (2004) Proteins
    • Lee, D.1    Grant, A.2    Marsden, R.3    Orengo, C.4
  • 17
  • 18
    • 0028593509 scopus 로고
    • Protein superfamilies and domain superfolds
    • Orengo,C.A., Jones,D.T. and Thornton,J.M. (1994) Protein superfamilies and domain superfolds. Nature, 372, 631-634.
    • (1994) Nature , vol.372 , pp. 631-634
    • Orengo, C.A.1    Jones, D.T.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.