-
1
-
-
20644461729
-
Transcriptional networks in developing and mature B cells
-
15928681
-
Matthias P Rolink AG Transcriptional networks in developing and mature B cells Nat Rev Immunol 2005, 5(6):497-508. 15928681
-
(2005)
Nat Rev Immunol
, vol.5
, pp. 497-508
-
-
Matthias, P.1
Rolink, A.G.2
-
2
-
-
17444396980
-
Molecular genetics of T cell development
-
15771582
-
Rothenberg EV Taghon T Molecular genetics of T cell development Annu Rev Immunol 2005, 23:601-649. 15771582
-
(2005)
Annu Rev Immunol
, vol.23
, pp. 601-649
-
-
Rothenberg, E.V.1
Taghon, T.2
-
3
-
-
33644842282
-
From stem cell to T cell: One route or many?
-
16491136
-
Bhandoola A Sambandam From stem cell to T cell: One route or many? Nature Reviews Immunology 2006, 6:117-126. 16491136
-
(2006)
Nature Reviews Immunology
, vol.6
, pp. 117-126
-
-
Bhandoola, A.1
Sambandam2
-
4
-
-
0037309260
-
Rules for gene usage inferred from a comparison of large-scale gene expression profiles of T and B lymphocyte development
-
12538694
-
Hoffmann R Bruno L Seidl T Rolink A Melchers F Rules for gene usage inferred from a comparison of large-scale gene expression profiles of T and B lymphocyte development J Immunol 2003, 170(3):1339-1353. 12538694
-
(2003)
J Immunol
, vol.170
, Issue.3
, pp. 1339-1353
-
-
Hoffmann, R.1
Bruno, L.2
Seidl, T.3
Rolink, A.4
Melchers, F.5
-
5
-
-
0036143404
-
Changes in gene expression profiles in developing B cells of murine bone marrow
-
155249 11779835
-
Hoffmann R Seidl T Neeb M Rolink A Melchers F Changes in gene expression profiles in developing B cells of murine bone marrow Genome Res 2002, 12:98-111. 155249 11779835
-
(2002)
Genome Res
, vol.12
, pp. 98-111
-
-
Hoffmann, R.1
Seidl, T.2
Neeb, M.3
Rolink, A.4
Melchers, F.5
-
6
-
-
0037375763
-
Regulatory coding of lymphoid lineage choice by hematopoietic transcription factors
-
12633666
-
Warren LA Rothenberg EV Regulatory coding of lymphoid lineage choice by hematopoietic transcription factors Curr Opin Immunol 2003, 15(2):166-175. 12633666
-
(2003)
Curr Opin Immunol
, vol.15
, Issue.2
, pp. 166-175
-
-
Warren, L.A.1
Rothenberg, E.V.2
-
7
-
-
0346727524
-
MicroRNAs modulate hematopoietic lineage differentiation
-
14657504
-
Chen CZ Li L Lodish HF Bartel DP MicroRNAs modulate hematopoietic lineage differentiation Science 2004, 303(5654):83-86. 14657504
-
(2004)
Science
, vol.303
, Issue.5654
, pp. 83-86
-
-
Chen, C.Z.1
Li, L.2
Lodish, H.F.3
Bartel, D.P.4
-
8
-
-
24644489402
-
MicroRNA profiling of the murine hematopoietic system
-
1273638 16086853
-
Monticelli S Ansel KM Xiao C Socci ND Krichevsky AM Thai TH Rajewsky N Marks DS Sander C Rajewsky K Rao A Kosik KS MicroRNA profiling of the murine hematopoietic system Genome Biol 2005, 6(8):R71. 1273638 16086853
-
(2005)
Genome Biol
, vol.6
, Issue.8
-
-
Monticelli, S.1
Ansel, K.M.2
Xiao, C.3
Socci, N.D.4
Krichevsky, A.M.5
Thai, T.H.6
Rajewsky, N.7
Marks, D.S.8
Sander, C.9
Rajewsky, K.10
Rao, A.11
Kosik, K.S.12
-
10
-
-
20144383240
-
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
-
15711547
-
Bystrykh L Weersing E Dontje B Sutton S Pletcher MT Wiltshire T Su AI Vellenga E Wang J Manly KF Lu L Chesler EJ Alberts R Jansen RC Williams RW Cooke MP de Haan G Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics' Nat Genet 2005, 37(3):225-232. 15711547
-
(2005)
Nat Genet
, vol.37
, pp. 225-232
-
-
Bystrykh, L.1
Weersing, E.2
Dontje, B.3
Sutton, S.4
Pletcher, M.T.5
Wiltshire, T.6
Su, A.I.7
Vellenga, E.8
Wang, J.9
Manly, K.F.10
Lu, L.11
Chesler, E.J.12
Alberts, R.13
Jansen, R.C.14
Williams, R.W.15
Cooke, M.P.16
de Haan, G.17
-
11
-
-
2542513931
-
Natural killer cells distinguish innocuous and destructive forms of pancreatic islet autoimmunity
-
419564 15141080
-
Poirot L Benoist C Mathis D Natural killer cells distinguish innocuous and destructive forms of pancreatic islet autoimmunity Proc Natl Acad Sci USA 2004, 101(21):8102-8107. 419564 15141080
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.21
, pp. 8102-8107
-
-
Poirot, L.1
Benoist, C.2
Mathis, D.3
-
12
-
-
20944435721
-
Basal immunoglobulin signaling actively maintains developmental stage in immature B cells
-
1059451 15752064
-
Tze LE Schram BR Lam KP Hogquist KA Hippen KL Liu J Shinton SA Otipoby KL Rodine PR Vegoe AL Kraus M Hardy RR Schlissel MS Rajewsky K Behrens TW Basal immunoglobulin signaling actively maintains developmental stage in immature B cells PLoS Biology 2005, 3(3):e82. 1059451 15752064
-
(2005)
PLoS Biology
, vol.3
, Issue.3
-
-
Tze, L.E.1
Schram, B.R.2
Lam, K.P.3
Hogquist, K.A.4
Hippen, K.L.5
Liu, J.6
Shinton, S.A.7
Otipoby, K.L.8
Rodine, P.R.9
Vegoe, A.L.10
Kraus, M.11
Hardy, R.R.12
Schlissel, M.S.13
Rajewsky, K.14
Behrens, T.W.15
-
13
-
-
3142744689
-
Modeling T-cell activation using gene expression profiling and state-space models
-
14962938
-
Rangel C Angus J Ghahramani Z Lioumi M Sotheran E Gaiba A Wild DL Falciani F Modeling T-cell activation using gene expression profiling and state-space models Bioinformatics 2004, 20(9):1361-1372. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/9/1361 14962938
-
(2004)
Bioinformatics
, vol.20
, pp. 1361-1372
-
-
Rangel, C.1
Angus, J.2
Ghahramani, Z.3
Lioumi, M.4
Sotheran, E.5
Gaiba, A.6
Wild, D.L.7
Falciani, F.8
-
14
-
-
33845595564
-
Modeling and simulation with Hybrid Functional Petri Nets of the role of interleukin-6 in human early haematopoiesis
-
17094258
-
Troncale S Tahi F Campard D Vannier JP Guespin J Modeling and simulation with Hybrid Functional Petri Nets of the role of interleukin-6 in human early haematopoiesis Pac Symp Biocomput 2006, :427-438. 17094258
-
(2006)
Pac Symp Biocomput
, pp. 427-438
-
-
Troncale, S.1
Tahi, F.2
Campard, D.3
Vannier, J.P.4
Guespin, J.5
-
15
-
-
16844376909
-
Reverse engineering of regulatory networks in human B cells
-
15778709
-
Basso K Margolin AA Stolovitzky G Klein U Dalla-Favera R Califano A Reverse engineering of regulatory networks in human B cells Nat Genet 2005, 37(4):382-390. 15778709
-
(2005)
Nat Genet
, vol.37
, Issue.4
, pp. 382-390
-
-
Basso, K.1
Margolin, A.A.2
Stolovitzky, G.3
Klein, U.4
Dalla-Favera, R.5
Califano, A.6
-
16
-
-
84933530882
-
Approximating discrete probability distributions with dependence trees
-
Chow C Liu C Approximating discrete probability distributions with dependence trees IEEE Trans Info Theory 1968, 14(3):462-467.
-
(1968)
IEEE Trans Info Theory
, vol.14
, pp. 462-467
-
-
Chow, C.1
Liu, C.2
-
17
-
-
0036203115
-
A mixture model-based approach to the clustering of microarray expression data
-
11934740
-
McLachlan GJ Bean RW Peel D A mixture model-based approach to the clustering of microarray expression data Bioinformatics 2002, 18(3):413-422. 11934740
-
(2002)
Bioinformatics
, vol.18
, pp. 413-422
-
-
McLachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
18
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
11673243
-
Yeung KY Fraley C Murua A Raftery AE Ruzzo WL Model-based clustering and data transformations for gene expression data Bioinformatics 2001, 17(10):977-987. 11673243
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
-
20
-
-
0037339264
-
Clustering of time-course gene expression data using a mixed-effects model with B-splines
-
12611802
-
Luan Y Li H Clustering of time-course gene expression data using a mixed-effects model with B-splines Bioinformatics 2003, 19(4):474-482. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/4/474 12611802
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 474-482
-
-
Luan, Y.1
Li, H.2
-
21
-
-
0037047161
-
Cluster analysis of gene expression dynamics
-
123104 12082179
-
Ramoni MF Sebastiani P Kohane IS Cluster analysis of gene expression dynamics Proc Natl Acad Sci USA 2002, 99(14):9121-9126. 123104 12082179
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.14
, pp. 9121-9126
-
-
Ramoni, M.F.1
Sebastiani, P.2
Kohane, I.S.3
-
24
-
-
2442503608
-
Learning multiple evolutionary pathways from cross-sectional data
-
New York, NY, USA: ACM Press
-
Beerenwinkel N Rahnenfuhrer J Daumer M Hoffmann D Kaiser R Selbig J Lengauer T Learning multiple evolutionary pathways from cross-sectional data RECOMB '04: Proceedings of the eighth annual international conference on Research in computational molecular biology New York, NY, USA: ACM Press 2004: 36-44.
-
(2004)
RECOMB '04: Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology
, pp. 36-44
-
-
Beerenwinkel, N.1
Rahnenfuhrer, J.2
Daumer, M.3
Hoffmann, D.4
Kaiser, R.5
Selbig, J.6
Lengauer, T.7
-
26
-
-
84870640374
-
-
Supplementary Material http://algorithmics.molgen.mpg.de/Supplements/ ExpLym/
-
Supplementary Material
-
-
-
27
-
-
0001006209
-
Local computations with probabilities on graphical structures and their application to expert systems
-
Lauritzen SL Spiegelhalter DJ Local computations with probabilities on graphical structures and their application to expert systems J Royal Statis Soc B 1988, 50:157-224.
-
(1988)
J Royal Statis Soc B
, vol.50
, pp. 157-224
-
-
Lauritzen, S.L.1
Spiegelhalter, D.J.2
-
28
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
Dempster A Laird N Rubin D Maximum likelihood from incomplete data via the EM algorithm JRSSB 1977, 39:1-38.
-
(1977)
JRSSB
, vol.39
, pp. 1-38
-
-
Dempster, A.1
Laird, N.2
Rubin, D.3
-
29
-
-
8844277626
-
Analyzing time series gene expression data
-
15130923
-
Bar-Joseph Z Analyzing time series gene expression data Bioinformatics 2004, 20(16):2493-503. 15130923
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2493-2503
-
-
Bar-Joseph, Z.1
-
30
-
-
0037667290
-
Clustering gene-expression data with repeated measurements
-
156590 12734014
-
Yeung KY Medvedovic M Bumgarner RE Clustering gene-expression data with repeated measurements Genome Biol 2003, 4(5):R34. 156590 12734014
-
(2003)
Genome Biol
, vol.4
, Issue.5
-
-
Yeung, K.Y.1
Medvedovic, M.2
Bumgarner, R.E.3
-
31
-
-
28644452470
-
Clustering short time series gene expression data
-
15961453
-
Ernst J Nau GJ Bar-Joseph Z Clustering short time series gene expression data Bioinformatics 2005, 21(suppl 1):i159-168. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/ suppl_1/i159 15961453
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Ernst, J.1
Nau, G.J.2
Bar-Joseph, Z.3
-
33
-
-
39449114336
-
Online Mendelian Inheritance in Man, OMIM (TM)
-
Johns Hopkins University M Baltimore Online Mendelian Inheritance in Man, OMIM (TM) World Wide Web 2006.http://www.ncbi.nlm.nih.gov/omim/
-
(2006)
World Wide Web
-
-
-
34
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
10802651
-
Ashburner M Gene Ontology: Tool for the unification of biology Nat Genet 2000, 25:25-29. 10802651
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
35
-
-
0037716821
-
A genomic view of lymphocyte development
-
12787746
-
Hoffmann R Melchers F A genomic view of lymphocyte development Curr Opin Immunol 2003, 15(3):239-245. 12787746
-
(2003)
Curr Opin Immunol
, vol.15
, pp. 239-245
-
-
Hoffmann, R.1
Melchers, F.2
-
36
-
-
0004066260
-
-
Wiley Series in Probability and Statistics, Wiley, New York
-
McLachlan G Peel D Finite Mixture Models Wiley Series in Probability and Statistics, Wiley, New York 2000.
-
(2000)
Finite Mixture Models
-
-
McLachlan, G.1
Peel, D.2
-
37
-
-
28644449917
-
How does gene expression clustering work?
-
16333293
-
D'haeseleer P How does gene expression clustering work? Nat Biotechnol 2005, 23(12):1499-1501. 16333293
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1499-1501
-
-
D'haeseleer, P.1
-
38
-
-
15144341797
-
Tumor necrosis factor receptor-associated factor (TRAF) 5 and TRAF2 are involved in CD30-mediated NFkappaB activation
-
8999898
-
Aizawa S Nakano H Ishida T Horie R Nagai M Ito K Yagita H Okumura K Inoue J Watanabe T Tumor necrosis factor receptor-associated factor (TRAF) 5 and TRAF2 are involved in CD30-mediated NFkappaB activation J Biol Chem 1997, 272(4):2042-2045. 8999898
-
(1997)
J Biol Chem
, vol.272
, pp. 2042-2045
-
-
Aizawa, S.1
Nakano, H.2
Ishida, T.3
Horie, R.4
Nagai, M.5
Ito, K.6
Yagita, H.7
Okumura, K.8
Inoue, J.9
Watanabe, T.10
-
39
-
-
0033578329
-
Targeted disruption of Traf5 gene causes defects in CD40- and CD27-mediated lymphocyte activation
-
22291 10449775
-
Nakano H Sakon S Koseki H Takemori T Tada K Matsumoto M Munechika E Sakai T Shirasawa T Akiba H Kobata T Santee SM Ware CF Rennert PD Taniguchi M Yagita H Okumura K Targeted disruption of Traf5 gene causes defects in CD40- and CD27-mediated lymphocyte activation PNAS 1999, 96(17):9803-9808. http://www.pnas.org/cgi/content/abstract/96/17/9803 22291 10449775
-
(1999)
PNAS
, vol.96
, Issue.17
, pp. 9803-9808
-
-
Nakano, H.1
Sakon, S.2
Koseki, H.3
Takemori, T.4
Tada, K.5
Matsumoto, M.6
Munechika, E.7
Sakai, T.8
Shirasawa, T.9
Akiba, H.10
Kobata, T.11
Santee, S.M.12
Ware, C.F.13
Rennert, P.D.14
Taniguchi, M.15
Yagita, H.16
Okumura, K.17
-
40
-
-
0037044575
-
The IkappaB-NF-kappaB signaling module: Temporal control and selective gene activation
-
12424381
-
Hoffmann A Levchenko A Scott ML Baltimore D The IkappaB-NF-kappaB signaling module: Temporal control and selective gene activation Science 2002, 298(5596):1241-1245. 12424381
-
(2002)
Science
, vol.298
, Issue.5596
, pp. 1241-1245
-
-
Hoffmann, A.1
Levchenko, A.2
Scott, M.L.3
Baltimore, D.4
-
41
-
-
0033817046
-
B-lymphocyte quiescence, tolerance and activation as viewed by global gene expression profiling on microarrays
-
11043780
-
Glynne R Ghandour G Rayner J Mack DH Goodnow CC B-lymphocyte quiescence, tolerance and activation as viewed by global gene expression profiling on microarrays Immunol Rev 2000, 176:216-246. 11043780
-
(2000)
Immunol Rev
, vol.176
, pp. 216-246
-
-
Glynne, R.1
Ghandour, G.2
Rayner, J.3
Mack, D.H.4
Goodnow, C.C.5
-
42
-
-
0036171199
-
Activation of the PKB/AKT pathway by ICAM-2
-
11825565
-
Perez OD Kinoshita S Hitoshi Y Payan DG Kitamura T Nolan GP Lorens JB Activation of the PKB/AKT pathway by ICAM-2 Immunity 2002, 16:51-65. 11825565
-
(2002)
Immunity
, vol.16
, pp. 51-65
-
-
Perez, O.D.1
Kinoshita, S.2
Hitoshi, Y.3
Payan, D.G.4
Kitamura, T.5
Nolan, G.P.6
Lorens, J.B.7
-
43
-
-
23044445246
-
The tumor suppressor TSLC1/NECL-2 triggers NK-cell and CD8+ T-cell responses through the cell-surface receptor CRTAM
-
15811952
-
Boles KS Barchet W Diacovo T Cella M Colonna M The tumor suppressor TSLC1/NECL-2 triggers NK-cell and CD8+ T-cell responses through the cell-surface receptor CRTAM Blood 2005, 106(3):779-786. 15811952
-
(2005)
Blood
, vol.106
, Issue.3
, pp. 779-786
-
-
Boles, K.S.1
Barchet, W.2
Diacovo, T.3
Cella, M.4
Colonna, M.5
-
44
-
-
0037121053
-
Genomic structure of mouse SPI-C and genomic structure and expression pattern of human SPI-C
-
12459275
-
Carlsson R Hjalmarsson A Liberg D Persson C Leanderson T Genomic structure of mouse SPI-C and genomic structure and expression pattern of human SPI-C Gene 2002, 299(1-2):271-278. 12459275
-
(2002)
Gene
, vol.299
, Issue.1-2
, pp. 271-278
-
-
Carlsson, R.1
Hjalmarsson, A.2
Liberg, D.3
Persson, C.4
Leanderson, T.5
-
45
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
14744438
-
Bartel DP MicroRNAs: Genomics, biogenesis, mechanism, and function Cell 2004, 116(2):281-297. 14744438
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
46
-
-
33646947554
-
Differential Repression of Alternative Transcripts: A Screen for miRNA Targets
-
1458965 16699595
-
Legendre M Ritchie W Lopez F Gautheret D Differential Repression of Alternative Transcripts: A Screen for miRNA Targets PLoS Computational Biology 2006, 2(5):e43. 1458965 16699595
-
(2006)
PLoS Computational Biology
, vol.2
, Issue.5
-
-
Legendre, M.1
Ritchie, W.2
Lopez, F.3
Gautheret, D.4
-
47
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
15685193
-
Lim LP Lau NC Garrett-Engele P Grimson A Schelter JM Castle J Bartel DP Linsley PS Johnson JM Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs Nature 2005, 433(7027):769-773. 15685193
-
(2005)
Nature
, vol.433
, Issue.7027
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
48
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
1413820 16477010
-
Sood P Krek A Zavolan M Macino G Rajewsky N Cell-type-specific signatures of microRNAs on target mRNA expression PNAS 2006, 103(8):2746-2751. http://www.pnas.org/cgi/content/abstract/103/8/2746 1413820 16477010
-
(2006)
PNAS
, vol.103
, Issue.8
, pp. 2746-2751
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
50
-
-
0004249246
-
-
New York: W. H. Freeman and Company
-
Sokal FR Rohlf Biometry New York: W. H. Freeman and Company; 1995.
-
(1995)
Biometry
-
-
Sokal, F.R.1
Rohlf2
-
51
-
-
3142665525
-
GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
-
14962934
-
Beissbarth T Speed TP GOstat: Find statistically overrepresented Gene Ontologies within a group of genes Bioinformatics 2004, 20(9):1464-1465. 14962934
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1464-1465
-
-
Beissbarth, T.1
Speed, T.P.2
-
53
-
-
20544458318
-
Stem cell division is regulated by the microRNA pathway
-
15944714
-
Hatfield SD Shcherbata HR Fischer KA Nakahara K Carthew RW Ruohola-Baker H Stem cell division is regulated by the microRNA pathway Nature 2005, 435(7044):974-978. 15944714
-
(2005)
Nature
, vol.435
, Issue.7044
, pp. 974-978
-
-
Hatfield, S.D.1
Shcherbata, H.R.2
Fischer, K.A.3
Nakahara, K.4
Carthew, R.W.5
Ruohola-Baker, H.6
-
54
-
-
0026571617
-
Polymorphism in a second ABC transporter gene located within the class II region of the human major histocompatibility complex
-
48471 1741401
-
Powis SH Mockridge I Kelly A Kerr LA Glynne R Gileadi U Beck S Trowsdale J Polymorphism in a second ABC transporter gene located within the class II region of the human major histocompatibility complex Proc Natl Acad Sci USA 1992, 89(4):1463-1467. 48471 1741401
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.4
, pp. 1463-1467
-
-
Powis, S.H.1
Mockridge, I.2
Kelly, A.3
Kerr, L.A.4
Glynne, R.5
Gileadi, U.6
Beck, S.7
Trowsdale, J.8
-
55
-
-
0242497228
-
Degradation of Cdc25A by beta-TrCP during S phase and in response to DNA damage
-
14603323
-
Busino L Donzelli M Chiesa M Guardavaccaro D Ganoth D Dorrello NV Hershko A Pagano M Draetta GF Degradation of Cdc25A by beta-TrCP during S phase and in response to DNA damage Nature 2003, 426(6962):87-91. 14603323
-
(2003)
Nature
, vol.426
, Issue.6962
, pp. 87-91
-
-
Busino, L.1
Donzelli, M.2
Chiesa, M.3
Guardavaccaro, D.4
Ganoth, D.5
Dorrello, N.V.6
Hershko, A.7
Pagano, M.8
Draetta, G.F.9
-
56
-
-
25444520537
-
miR-15 and miR-16 induce apoptosis by targeting BCL2
-
1236577 16166262
-
Cimmino A Calin GA Fabbri M Iorio MV Ferracin M Shimizu M Wojcik SE Aqeilan RI Zupo S Dono M Rassenti L Alder H Volinia S Liu CG Kipps TJ Negrini M Croce CM miR-15 and miR-16 induce apoptosis by targeting BCL2 Proc Natl Acad Sci USA 2005, 102(39):13944-13949. 1236577 16166262
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.39
, pp. 13944-13949
-
-
Cimmino, A.1
Calin, G.A.2
Fabbri, M.3
Iorio, M.V.4
Ferracin, M.5
Shimizu, M.6
Wojcik, S.E.7
Aqeilan, R.I.8
Zupo, S.9
Dono, M.10
Rassenti, L.11
Alder, H.12
Volinia, S.13
Liu, C.G.14
Kipps, T.J.15
Negrini, M.16
Croce, C.M.17
-
57
-
-
0036672150
-
Spatially specific expression of Hoxb4 is dependent on the ubiquitous transcription factor NFY
-
12135926
-
Gilthorpe J Vandromme M Brend T Gutman A Summerbell D Totty N Rigby PWJ Spatially specific expression of Hoxb4 is dependent on the ubiquitous transcription factor NFY Development 2002, 129(16):3887-3899. 12135926
-
(2002)
Development
, vol.129
, Issue.16
, pp. 3887-3899
-
-
Gilthorpe, J.1
Vandromme, M.2
Brend, T.3
Gutman, A.4
Summerbell, D.5
Totty, N.6
Rigby, P.W.J.7
-
58
-
-
0033485858
-
A nuclear factor Y (NFY) site positively regulates the human CD34 stem cell gene
-
10572091
-
Radomska HS Satterthwaite AB Taranenko N Narravula S Krause DS Tenen DG A nuclear factor Y (NFY) site positively regulates the human CD34 stem cell gene Blood 1999, 94(11):3772-3780. 10572091
-
(1999)
Blood
, vol.94
, Issue.11
, pp. 3772-3780
-
-
Radomska, H.S.1
Satterthwaite, A.B.2
Taranenko, N.3
Narravula, S.4
Krause, D.S.5
Tenen, D.G.6
-
59
-
-
0033861006
-
Transcriptional scaffold: CIITA interacts with NF-Y, RFX, and CREB to cause stereospecific regulation of the class II major histocompatibility complex promoter
-
86081 10913187
-
Zhu XS Linhoff MW Li G Chin KC Maity SN Ting JP Transcriptional scaffold: CIITA interacts with NF-Y, RFX, and CREB to cause stereospecific regulation of the class II major histocompatibility complex promoter Mol Cell Biol 2000, 20(16):6051-6061. 86081 10913187
-
(2000)
Mol Cell Biol
, vol.20
, Issue.16
, pp. 6051-6061
-
-
Zhu, X.S.1
Linhoff, M.W.2
Li, G.3
Chin, K.C.4
Maity, S.N.5
Ting, J.P.6
-
60
-
-
33746195568
-
The growth factor independence-1 transcription factor: New functions and new insights
-
16716599
-
Kazanjian A Gross EA Grimes HL The growth factor independence-1 transcription factor: New functions and new insights Crit Rev Oncol Hematol 2006. 16716599
-
(2006)
Crit Rev Oncol Hematol
-
-
Kazanjian, A.1
Gross, E.A.2
Grimes, H.L.3
-
61
-
-
0032531041
-
Evidence implicating Gfi-1 and Pim-1 in pre-T-cell differentiation steps associated with beta-selection
-
1170861 9736613
-
Schmidt T Karsunky H Rodel B Zevnik B Elsasser HP Moroy T Evidence implicating Gfi-1 and Pim-1 in pre-T-cell differentiation steps associated with beta-selection EMBO J 1998, 17(18):5349-5359. 1170861 9736613
-
(1998)
EMBO J
, vol.17
, Issue.18
, pp. 5349-5359
-
-
Schmidt, T.1
Karsunky, H.2
Rodel, B.3
Zevnik, B.4
Elsasser, H.P.5
Moroy, T.6
-
62
-
-
33745765418
-
Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data. Lect. Notes
-
Huang J Morris Q Frey B Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data. Lect. Notes Comput. Sci 2006, 3909:114-29. http://www.springerlink.com/ openurl.asp?genre=article&id=doi:10.1007/11732990_11
-
(2006)
Comput. Sci
, vol.3909
, pp. 114-129
-
-
Huang, J.1
Morris, Q.2
Frey, B.3
-
63
-
-
2442446708
-
Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
-
12855470
-
Segal E Yelensky R Koller D Genome-wide discovery of transcriptional modules from DNA sequence and gene expression Bioinformatics 2003, 19(Suppl 1):i273-i282. http://bioinformatics.oxfordjournals.org/cgi/ content/abstract/19/suppl_1/i273 12855470
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Segal, E.1
Yelensky, R.2
Koller, D.3
-
64
-
-
0842309161
-
Discovering molecular pathways from protein interaction and gene expression data
-
12855469
-
Segal E Wang H Koller D Discovering molecular pathways from protein interaction and gene expression data Bioinformatics 2003, 19(Suppl 1):i264-i271. 12855469
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Segal, E.1
Wang, H.2
Koller, D.3
-
65
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
12740579
-
Segal E Shapira M Regev A Pe'er D Botstein D Koller D Friedman N Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data Nat Genet 2003, 34(2):166-176. 12740579
-
(2003)
Nat Genet
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
67
-
-
19344375744
-
Semi-supervised methods to predict patient survival from gene expression data
-
387275 15094809
-
Bair E Tibshirani R Semi-supervised methods to predict patient survival from gene expression data PLoS Biol 2004, 2(4):E108. 387275 15094809
-
(2004)
PLoS Biol
, vol.2
, Issue.4
-
-
Bair, E.1
Tibshirani, R.2
-
68
-
-
33750022956
-
Semi-supervised learning via penalized mixture model with application to microarray sample classification
-
16870935
-
Pan W Shen X Jiang A Hebbel RP Semi-supervised learning via penalized mixture model with application to microarray sample classification Bioinformatics 2006, 22(19):2388-2395. 16870935
-
(2006)
Bioinformatics
, vol.22
, Issue.19
, pp. 2388-2395
-
-
Pan, W.1
Shen, X.2
Jiang, A.3
Hebbel, R.P.4
-
69
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
14764868
-
Friedman N Inferring cellular networks using probabilistic graphical models Science 2004, 303(5659):799-805. 14764868
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 799-805
-
-
Friedman, N.1
-
70
-
-
33745193973
-
Gene expression microarrays: Glimpses of the immunological genome
-
16785882
-
Hyatt G Melamed R Park R Seguritan R Laplace C Poirot L Zucchelli S Obst R Matos M Venanzi E Goldrath A Nguyen L Luckey J Yamagata T Herman A Jacobs J Mathis D Benoist C Gene expression microarrays: Glimpses of the immunological genome Nat Immunol 2006, 7(7):686-691. 16785882
-
(2006)
Nat Immunol
, vol.7
, Issue.7
, pp. 686-691
-
-
Hyatt, G.1
Melamed, R.2
Park, R.3
Seguritan, R.4
Laplace, C.5
Poirot, L.6
Zucchelli, S.7
Obst, R.8
Matos, M.9
Venanzi, E.10
Goldrath, A.11
Nguyen, L.12
Luckey, J.13
Yamagata, T.14
Herman, A.15
Jacobs, J.16
Mathis, D.17
Benoist, C.18
-
72
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
12169536
-
Huber W Heydebreck AV Sultmann H Poustka A Vingron M Variance stabilization applied to microarray data calibration and to the quantification of differential expression Bioinformatics 2002, 18(Suppl 1):S96-S104. 12169536
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
Heydebreck, A.V.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
73
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
99122 11752295
-
Edgar R Domrachev M Lash AE Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucl Acids Res 2002, 30:207-210. http://nar.oxfordjournals.org/cgi/content/abstract/30/1/207 99122 11752295
-
(2002)
Nucl Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
74
-
-
29144440077
-
MicroRNAs 221 and 222 inhibit normal erythropoiesis and erythroleukemic cell growth via kit receptor down-modulation
-
1312381 16330772
-
Felli N Fontana L Pelosi E Botta R Bonci D Facchiano F Liuzzi F Lulli V Morsilli O Santoro S Valtieri M Calin GA Liu CG Sorrentino A Croce CM Peschle C MicroRNAs 221 and 222 inhibit normal erythropoiesis and erythroleukemic cell growth via kit receptor down-modulation Proc Natl Acad Sci USA 2005, 102(50):18081-18086. 1312381 16330772
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.50
, pp. 18081-18086
-
-
Felli, N.1
Fontana, L.2
Pelosi, E.3
Botta, R.4
Bonci, D.5
Facchiano, F.6
Liuzzi, F.7
Lulli, V.8
Morsilli, O.9
Santoro, S.10
Valtieri, M.11
Calin, G.A.12
Liu, C.G.13
Sorrentino, A.14
Croce, C.M.15
Peschle, C.16
-
75
-
-
4143142117
-
MicroRNA profiling reveals distinct signatures in B cell chronic lymphocytic leukemias
-
511048 15284443
-
Calin GA Liu CG Sevignani C Ferracin M Felli N Dumitru CD Shimizu M Cimmino A Zupo S Dono M Dell'Aquila ML Alder H Rassenti L Kipps TJ Bullrich F Negrini M Croce CM MicroRNA profiling reveals distinct signatures in B cell chronic lymphocytic leukemias PNAS 2004, 101(32):11755-11760. http://www.pnas.org/cgi/content/abstract/101/32/ 11755 511048 15284443
-
(2004)
PNAS
, vol.101
, Issue.32
, pp. 11755-11760
-
-
Calin, G.A.1
Liu, C.G.2
Sevignani, C.3
Ferracin, M.4
Felli, N.5
Dumitru, C.D.6
Shimizu, M.7
Cimmino, A.8
Zupo, S.9
Dono, M.10
Dell'Aquila, M.L.11
Alder, H.12
Rassenti, L.13
Kipps, T.J.14
Bullrich, F.15
Negrini, M.16
Croce, C.M.17
-
76
-
-
22144461002
-
miRNAs, cancer, and stem cell division
-
16009126
-
Croce CM Calin GA miRNAs, cancer, and stem cell division Cell 2005, 122:6-7. 16009126
-
(2005)
Cell
, vol.122
, pp. 6-7
-
-
Croce, C.M.1
Calin, G.A.2
-
78
-
-
33645494837
-
Bayesian Linear Regression
-
MIT
-
Minka TP Bayesian Linear Regression Tech rep MIT; 2001.
-
(2001)
Tech Rep
-
-
Minka, T.P.1
-
79
-
-
0034187784
-
Clustering of the Self-Organizing Map
-
18249787
-
Vesanto J Alhoniemi E Clustering of the Self-Organizing Map IEEE Transactions on Neural Networks 2000, 11: 3 586. http://citeseer.ist.psu.edu/article/vesanto00clustering.html 18249787
-
(2000)
IEEE Transactions on Neural Networks
, vol.11
, pp. 586
-
-
Vesanto, J.1
Alhoniemi, E.2
|