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Volumn 36, Issue 2, 2008, Pages 697-704

Studies on the mechanism of inhibition of bacterial ribonuclease P by aminoglycoside derivatives

Author keywords

[No Author keywords available]

Indexed keywords

AMINOGLYCOSIDE ARGININE CONJUGATE; AMINOGLYCOSIDE DERIVATIVE; ARCHAEAL PROTEIN; ARGININE; BACTERIAL ENZYME; ENZYME INHIBITOR; FRAMYCETIN; HOLOENZYME; MAGNESIUM ION; RIBONUCLEASE P; UNCLASSIFIED DRUG;

EID: 39149107446     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm1088     Document Type: Article
Times cited : (26)

References (50)
  • 1
    • 0034783659 scopus 로고    scopus 로고
    • Targeting RNA with small-molecule drugs: Therapeutic promise and chemical challenges
    • Gallego,J. and Varani,G. (2001) Targeting RNA with small-molecule drugs: Therapeutic promise and chemical challenges. Acc. Chem.Res., 34 836-843.
    • (2001) Acc. Chem.Res , vol.34 , pp. 836-843
    • Gallego, J.1    Varani, G.2
  • 2
    • 0041836268 scopus 로고    scopus 로고
    • Chemical and functional diversity of small molecule ligands for RNA
    • Hermann,T. (2003) Chemical and functional diversity of small molecule ligands for RNA. Biopolymers, 70, 4-48.
    • (2003) Biopolymers , vol.70 , pp. 4-48
    • Hermann, T.1
  • 3
    • 13544264777 scopus 로고    scopus 로고
    • RNA as target for smaff molecule therapeutics
    • Hermann,T. and Tor,Y. (2005) RNA as target for smaff molecule therapeutics. Expert Opin. Ther. Patents, 15, 49-62.
    • (2005) Expert Opin. Ther. Patents , vol.15 , pp. 49-62
    • Hermann, T.1    Tor, Y.2
  • 4
    • 34247606403 scopus 로고    scopus 로고
    • New insights into aminoglycoside antibiotics and derivatives
    • Silva,J.G. and Carvalho,I. (2007) New insights into aminoglycoside antibiotics and derivatives. Curr. Med. Chem., 14, 1101-1119.
    • (2007) Curr. Med. Chem , vol.14 , pp. 1101-1119
    • Silva, J.G.1    Carvalho, I.2
  • 5
    • 0034814681 scopus 로고    scopus 로고
    • The ribonuclease P family
    • Hall,T.A. and Brown,J.W. (2001) The ribonuclease P family. Meth. Enzymol., 341, 56-77.
    • (2001) Meth. Enzymol , vol.341 , pp. 56-77
    • Hall, T.A.1    Brown, J.W.2
  • 6
    • 33745166320 scopus 로고    scopus 로고
    • RNase P: Interface of the RNA and protein worlds
    • Evans,.D., Marquez,S.M. and Pace,N.R. (2006) RNase P: Interface of the RNA and protein worlds. Trends Biochem. Sci., 31, 333-341.
    • (2006) Trends Biochem. Sci , vol.31 , pp. 333-341
    • Evans, D.1    Marquez, S.M.2    Pace, N.R.3
  • 7
    • 39149083686 scopus 로고    scopus 로고
    • Gopalan,V. and Altman,S. (2006) Ribonuclease P: Structure and catalysis. In Gesteland,R.F., Cech,T. and Atkins,J.F. (eds), The RNA World. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NYChapter 6.1 (online only at http://rna.cshl.edu).
    • Gopalan,V. and Altman,S. (2006) Ribonuclease P: Structure and catalysis. In Gesteland,R.F., Cech,T. and Atkins,J.F. (eds), The RNA World. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NYChapter 6.1 (online only at http://rna.cshl.edu).
  • 8
    • 33645747326 scopus 로고    scopus 로고
    • Ribonuclease P: The evolution of an ancient RNA enzyme
    • Walker,S.C. and Engelke,D.R. (2006) Ribonuclease P: The evolution of an ancient RNA enzyme. Crit. Rev. Biochem. Mol. Biol., 41, 77-102.
    • (2006) Crit. Rev. Biochem. Mol. Biol , vol.41 , pp. 77-102
    • Walker, S.C.1    Engelke, D.R.2
  • 9
  • 11
    • 0017810319 scopus 로고
    • Interaction of neomycin with ribosomes and ribosornal ribonucleic acid
    • Dahlberg,A.E., Horodyski,F. and Keller,P. (1978) Interaction of neomycin with ribosomes and ribosornal ribonucleic acid. Antimicrob. Agents Chemother., 13, 331-339.
    • (1978) Antimicrob. Agents Chemother , vol.13 , pp. 331-339
    • Dahlberg, A.E.1    Horodyski, F.2    Keller, P.3
  • 12
    • 0023238983 scopus 로고
    • Interactions of antibiotics with functional sites in 16S ribosomal RNA
    • Moazed,D. and Noller,H.F. (1987) Interactions of antibiotics with functional sites in 16S ribosomal RNA. Nature, 327, 389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 13
    • 33747891811 scopus 로고    scopus 로고
    • The ribosomal A-site as an inspiration for the design of RNA binders
    • Tor,Y. (2006) The ribosomal A-site as an inspiration for the design of RNA binders. Biochimie, 88, 1045-1051.
    • (2006) Biochimie , vol.88 , pp. 1045-1051
    • Tor, Y.1
  • 14
    • 0027370433 scopus 로고
    • Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production
    • Zapp,M.L., Stern,S. and Green,M.R. (1993) Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production. Cell, 74, 969-978.
    • (1993) Cell , vol.74 , pp. 969-978
    • Zapp, M.L.1    Stern, S.2    Green, M.R.3
  • 15
    • 0025873818 scopus 로고
    • Antibiotic inhibition of group I ribozyme function
    • von Ahsen,U., Davies,J. and Schroeder,R. (1991) Antibiotic inhibition of group I ribozyme function. Nature, 353, 368-370.
    • (1991) Nature , vol.353 , pp. 368-370
    • von Ahsen, U.1    Davies, J.2    Schroeder, R.3
  • 16
    • 0343799864 scopus 로고    scopus 로고
    • Inhibition of the self-cleaving reaction of the human Hepatitis delta virus ribozyme by antibiotics
    • Rogers,J., Chang,A.H., von Ahsen,U., Schroeder,R. and Davics,J. (1996) Inhibition of the self-cleaving reaction of the human Hepatitis delta virus ribozyme by antibiotics. J. Mol. Biol., 259, 916-925.
    • (1996) J. Mol. Biol , vol.259 , pp. 916-925
    • Rogers, J.1    Chang, A.H.2    von Ahsen, U.3    Schroeder, R.4    Davics, J.5
  • 18
    • 0032513007 scopus 로고    scopus 로고
    • Aminoglycoside binding to the hammerhead ribozyme: A general model for the interaction of cationic antibiotics with RNA
    • Hermann,T. and Westhof,E. (1998) Aminoglycoside binding to the hammerhead ribozyme: A general model for the interaction of cationic antibiotics with RNA. J. Mol. Biol., 276, 903-912.
    • (1998) J. Mol. Biol , vol.276 , pp. 903-912
    • Hermann, T.1    Westhof, E.2
  • 19
    • 0032212026 scopus 로고    scopus 로고
    • Deciphering RNA recognition: Aminoglycoside binding to the hammerhead ribozyme
    • Tor,Y., Hermann,T. and Westhof,E. (1998) Deciphering RNA recognition: aminoglycoside binding to the hammerhead ribozyme. Chem. Biol., 5, R277-283.
    • (1998) Chem. Biol , vol.5
    • Tor, Y.1    Hermann, T.2    Westhof, E.3
  • 20
    • 0042337397 scopus 로고    scopus 로고
    • Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: An analysis of X-ray crystal structures
    • Vicens,Q. and Westhof,E. (2003) Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: An analysis of X-ray crystal structures. Biopolymers, 70, 42-57.
    • (2003) Biopolymers , vol.70 , pp. 42-57
    • Vicens, Q.1    Westhof, E.2
  • 21
    • 0034614052 scopus 로고    scopus 로고
    • Guanidinoglycosides: A novel family of RNA ligands
    • Leudtke,N.W., Baker,T.J., Goodman,M. and Tor,Y. (2000) Guanidinoglycosides: A novel family of RNA ligands. J. Am. Chem. Soc. 122, 12035-12036.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 12035-12036
    • Leudtke, N.W.1    Baker, T.J.2    Goodman, M.3    Tor, Y.4
  • 22
    • 0029048796 scopus 로고
    • Structural variety of arginine-rich RNA binding peptides
    • Tan,R. and Frankel,A.D. (1995) Structural variety of arginine-rich RNA binding peptides. Proc. Natl Acad. Sci. USA, 92, 5282-5286.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 5282-5286
    • Tan, R.1    Frankel, A.D.2
  • 23
    • 0028858599 scopus 로고
    • Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex
    • Puglisi,J.D., Chen,L., Blanchard,S. and Frankel,A.D. (1995) Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex. Science, 270, 1200-1203.
    • (1995) Science , vol.270 , pp. 1200-1203
    • Puglisi, J.D.1    Chen, L.2    Blanchard, S.3    Frankel, A.D.4
  • 24
    • 0034696520 scopus 로고    scopus 로고
    • Arginine-aminoglycoside conjugates that bind to HIV transactivation responsive element RNA in vitro
    • Litovchick,A., Evdokimov,A.G. and Lapidot,A. (2000) Arginine-aminoglycoside conjugates that bind to HIV transactivation responsive element RNA in vitro. Biochemistry, 39, 2838-2852.
    • (2000) Biochemistry , vol.39 , pp. 2838-2852
    • Litovchick, A.1    Evdokimov, A.G.2    Lapidot, A.3
  • 25
    • 0035951091 scopus 로고    scopus 로고
    • Neomycin B-arginine conjugate, a novel HIV-1 Tat antagonist: Synthesis and anti-HIV activities
    • Litovchick,A., Lapidot,A., Eisenstein,M., Kalinkovich,A. and Borkow,G. (2001) Neomycin B-arginine conjugate, a novel HIV-1 Tat antagonist: synthesis and anti-HIV activities. Biochemistry, 40, 15612-15623.
    • (2001) Biochemistry , vol.40 , pp. 15612-15623
    • Litovchick, A.1    Lapidot, A.2    Eisenstein, M.3    Kalinkovich, A.4    Borkow, G.5
  • 28
    • 0023696278 scopus 로고
    • Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli
    • Vioque,A., Arnez,J. and Altman,S. (1988) Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli. J. Mol. Biol., 202 835-848.
    • (1988) J. Mol. Biol , vol.202 , pp. 835-848
    • Vioque, A.1    Arnez, J.2    Altman, S.3
  • 30
    • 33750831489 scopus 로고    scopus 로고
    • Functional reconstitution and characterization of Pyrococcus furiosus RNase P
    • Tsai,H.Y., Pulukkunat,D.K., Woznick,W. and Gopalan,V. (2006) Functional reconstitution and characterization of Pyrococcus furiosus RNase P. Proc. Natl Acad. Sci. USA, 103, 16147-16152.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 16147-16152
    • Tsai, H.Y.1    Pulukkunat, D.K.2    Woznick, W.3    Gopalan, V.4
  • 31
    • 34249855228 scopus 로고    scopus 로고
    • Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes
    • Zhu,Y., Pulukkunat,D.K. and Li,Y. (2007) Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes. Nucleic Acids Res., 35, 2283-2294.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2283-2294
    • Zhu, Y.1    Pulukkunat, D.K.2    Li, Y.3
  • 32
    • 0038475910 scopus 로고    scopus 로고
    • Recognition of the 5′ leader of pre-tRNA substrates by the active site of ribonuclease P
    • Zahler,N.H., Christian,E.I., and Harris,M.E. (2003) Recognition of the 5′ leader of pre-tRNA substrates by the active site of ribonuclease P. RNA, 9, 734-745.
    • (2003) RNA , vol.9 , pp. 734-745
    • Zahler, N.H.1    Christian, E.I.2    Harris, M.E.3
  • 33
    • 85027872287 scopus 로고    scopus 로고
    • Preparation and use of N,N′-di-Boc-N″-triflylguanidine
    • Baker,T.J., Tomioka,M. and Goodman,M. (2000) Preparation and use of N,N′-di-Boc-N″-triflylguanidine. Org. Syn., 78, 91-98.
    • (2000) Org. Syn , vol.78 , pp. 91-98
    • Baker, T.J.1    Tomioka, M.2    Goodman, M.3
  • 34
    • 0034731571 scopus 로고    scopus 로고
    • Synthesis and anti-HIV activity of guanidinoglycosides
    • Baker,T.J., Luedtke,N.W., Tor,Y. and Goodman,M. (2000) Synthesis and anti-HIV activity of guanidinoglycosides. J. Org. Chem., 65, 9054-9058.
    • (2000) J. Org. Chem , vol.65 , pp. 9054-9058
    • Baker, T.J.1    Luedtke, N.W.2    Tor, Y.3    Goodman, M.4
  • 35
    • 0037049170 scopus 로고    scopus 로고
    • Syntheis of novel guanidine incorporated AGs, guanidinopyranamycins
    • Hui,Y., Ptak,R., Paulman,R., Pallansch,M. and Chang,C.W.T. (2002) Syntheis of novel guanidine incorporated AGs, guanidinopyranamycins. Tetrahedron Lett., 43, 9255-9257.
    • (2002) Tetrahedron Lett , vol.43 , pp. 9255-9257
    • Hui, Y.1    Ptak, R.2    Paulman, R.3    Pallansch, M.4    Chang, C.W.T.5
  • 36
    • 39149133908 scopus 로고    scopus 로고
    • Elucidation of stracture-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach
    • Jovanovic,M., Sanchez,R., Altman,S. and Gopalan,V. (2002) Elucidation of stracture-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach. Nucleic Acids Res. 22, 4087-4094.
    • (2002) Nucleic Acids Res , vol.22 , pp. 4087-4094
    • Jovanovic, M.1    Sanchez, R.2    Altman, S.3    Gopalan, V.4
  • 38
    • 0035005249 scopus 로고    scopus 로고
    • Aminoglycoside binding displaces a divalent metal ion in a tRNA-neomycin B complex
    • Mikkelsen,N.E., Johansson,K., Virtanen,A. and Kirsebom,L.A. (2001) Aminoglycoside binding displaces a divalent metal ion in a tRNA-neomycin B complex. Nature Struct. Biol., 8, 510-514.
    • (2001) Nature Struct. Biol , vol.8 , pp. 510-514
    • Mikkelsen, N.E.1    Johansson, K.2    Virtanen, A.3    Kirsebom, L.A.4
  • 39
    • 0032566484 scopus 로고    scopus 로고
    • Antibiotic inhibition of RNA catalysis: Neomycin B binds to the catalytic core of the td group I intron displacing essential metal ions
    • Hoch,I., Berens,C., Westhof,E. and Schroeder,R. (1998) Antibiotic inhibition of RNA catalysis: Neomycin B binds to the catalytic core of the td group I intron displacing essential metal ions. J. Mol. Biol., 282, 557-569.
    • (1998) J. Mol. Biol , vol.282 , pp. 557-569
    • Hoch, I.1    Berens, C.2    Westhof, E.3    Schroeder, R.4
  • 40
    • 0035259427 scopus 로고    scopus 로고
    • New insights into RNase P RNA structure from comparative analysis of the archaeal RNA
    • Harris,J.K., Haas,E.S., Williams,D.A. and Brown,J.W. (2001) New insights into RNase P RNA structure from comparative analysis of the archaeal RNA. RNA, 7, 220-232.
    • (2001) RNA , vol.7 , pp. 220-232
    • Harris, J.K.1    Haas, E.S.2    Williams, D.A.3    Brown, J.W.4
  • 41
    • 0041932005 scopus 로고    scopus 로고
    • Aminoglycoside (neomycin) preference is for A-form nucleic acids, not just RNA: Results from a competition dialysis study
    • Arya,D., Xue,L. and Willis,B. (2003) Aminoglycoside (neomycin) preference is for A-form nucleic acids, not just RNA: Results from a competition dialysis study. J. Am. Chem. Soc., 125, 10148-10149.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 10148-10149
    • Arya, D.1    Xue, L.2    Willis, B.3
  • 42
    • 0032534533 scopus 로고    scopus 로고
    • Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions
    • Earnshaw,D.J. and Gait,M.J. (1998) Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions. Nucleic Acids Res., 26, 5561-5571.
    • (1998) Nucleic Acids Res , vol.26 , pp. 5561-5571
    • Earnshaw, D.J.1    Gait, M.J.2
  • 44
    • 0025992237 scopus 로고
    • Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli
    • Kazakov,S. and Altman,S. (1991) Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli. Proc. Natl Acad. Sci. USA, 88, 9193-9197.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 9193-9197
    • Kazakov, S.1    Altman, S.2
  • 45
    • 34848863932 scopus 로고    scopus 로고
    • RNase P RNA mediated cleavage: Substrate recognition and catalysis
    • Kirsebom,L.A. (2007) RNase P RNA mediated cleavage: Substrate recognition and catalysis. Biochimie, 89, 1183-1194.
    • (2007) Biochimie , vol.89 , pp. 1183-1194
    • Kirsebom, L.A.1
  • 49
    • 0036441045 scopus 로고    scopus 로고
    • Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P
    • Christian,E.L., Zahler,N.H., Kaye,N.M. and Harris,M.E. (2002) Analysis of substrate recognition by the ribonucleoprotein endonuclease RNase P. Methods, 28, 307-322.
    • (2002) Methods , vol.28 , pp. 307-322
    • Christian, E.L.1    Zahler, N.H.2    Kaye, N.M.3    Harris, M.E.4
  • 50
    • 0344298926 scopus 로고    scopus 로고
    • The ribonuclease P database
    • Brown,J.W. (1999) The ribonuclease P database. Nucleic Acids Res., 27, 314.
    • (1999) Nucleic Acids Res , vol.27 , pp. 314
    • Brown, J.W.1


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