-
1
-
-
0025873818
-
Antibiotic inhibition of group I ribozyme function
-
von Ahsen U., Davies J., Schroeder R. Antibiotic inhibition of group I ribozyme function. Nature. 353:1991;368-370
-
(1991)
Nature
, vol.353
, pp. 368-370
-
-
Von Ahsen, U.1
Davies, J.2
Schroeder, R.3
-
2
-
-
0344796204
-
Ion-water interaction potentials derived from free energy perturbation simulations
-
Åqvist J.J. Ion-water interaction potentials derived from free energy perturbation simulations. Phys. Chem. 94:1990;8021-8024
-
(1990)
Phys. Chem.
, vol.94
, pp. 8021-8024
-
-
Åqvist, J.J.1
-
3
-
-
0026019625
-
Structural basis for the 3′-5′ exonuclease activity of E. coli DNA polymerase I: A two metal ion mechanism
-
Beese L.S., Steitz T.A. Structural basis for the 3′-5′ exonuclease activity of E. coli DNA polymerase I a two metal ion mechanism. EMBO J. 10:1991;25-33
-
(1991)
EMBO J.
, vol.10
, pp. 25-33
-
-
Beese, L.S.1
Steitz, T.A.2
-
5
-
-
0020708497
-
Nitrogen-15 nuclear magnetic resonance spectroscopy of neomycin B and related aminoglycosides
-
Botto R.E., Coxon B. Nitrogen-15 nuclear magnetic resonance spectroscopy of neomycin B and related aminoglycosides. J. Am. Chem. Soc. 105:1983;1021-1028
-
(1983)
J. Am. Chem. Soc.
, vol.105
, pp. 1021-1028
-
-
Botto, R.E.1
Coxon, B.2
-
6
-
-
0029113144
-
Neomycin inhibition of the hammerhead ribozyme involves ionic interactions
-
Clouet-d'Orval B., Stage T.K., Uhlenbeck O.C. Neomycin inhibition of the hammerhead ribozyme involves ionic interactions. Biochemistry. 34:1995;11186-11190
-
(1995)
Biochemistry
, vol.34
, pp. 11186-11190
-
-
Clouet-D'Orval, B.1
Stage, T.K.2
Uhlenbeck, O.C.3
-
7
-
-
0025998488
-
Role of divalent metal ions in the hammerhead RNA cleavage reaction
-
Dahm S.C., Uhlenbeck O.C. Role of divalent metal ions in the hammerhead RNA cleavage reaction. Biochemistry. 30:1991;9464-9469
-
(1991)
Biochemistry
, vol.30
, pp. 9464-9469
-
-
Dahm, S.C.1
Uhlenbeck, O.C.2
-
8
-
-
33846823909
-
Particle Mesh Ewald: An N. logN method for Ewald sums in large systems
-
Darden T.A., York D., Pedersen L.G. Particle Mesh Ewald an N. logN method for Ewald sums in large systems. J. Chem. Phys. 98:1993;10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.A.1
York, D.2
Pedersen, L.G.3
-
9
-
-
0002957724
-
Antibiotics and the RNA world: A role for low-molecular-weight effectors in biochemical evolution?
-
R.F. Gesteland, & J.F. Atkins. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Davies J., von Ahsen U., Schroeder R. Antibiotics and the RNA world a role for low-molecular-weight effectors in biochemical evolution? Gesteland R.F., Atkins J.F. The RNA World. 1993;185-204 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1993)
The RNA World
, pp. 185-204
-
-
Davies, J.1
Von Ahsen, U.2
Schroeder, R.3
-
10
-
-
0025040632
-
An attempt to unify the structure of polymerases
-
Delarue M., Poch O., Tordo N., Moras D., Argos P. An attempt to unify the structure of polymerases. Protein Eng. 3:1990;461-467
-
(1990)
Protein Eng.
, vol.3
, pp. 461-467
-
-
Delarue, M.1
Poch, O.2
Tordo, N.3
Moras, D.4
Argos, P.5
-
11
-
-
0029943824
-
In vitro selection analysis of neomycin binding RNAs with a mutagenized pool of variants of the 16 S rRNA decoding region
-
Famulok M., Hüttenhofer A. In vitro selection analysis of neomycin binding RNAs with a mutagenized pool of variants of the 16 S rRNA decoding region. Biochemistry. 35:1996;4265-4270
-
(1996)
Biochemistry
, vol.35
, pp. 4265-4270
-
-
Famulok, M.1
Hüttenhofer, A.2
-
12
-
-
0029825658
-
Structure of the a site of E. coli 16 S ribosomal RNA complexed with an aminoglycoside antibiotic
-
Fourmy D., Recht M.I., Blanchard S.C., Puglisi J.D. Structure of the A site of E. coli 16 S ribosomal RNA complexed with an aminoglycoside antibiotic. Science. 274:1996;1367-1371
-
(1996)
Science
, vol.274
, pp. 1367-1371
-
-
Fourmy, D.1
Recht, M.I.2
Blanchard, S.C.3
Puglisi, J.D.4
-
13
-
-
0003963058
-
-
New York: Wiley
-
Gale E.F., Cundliffe E., Reynolds P.E., Richmond M.H., Waring M.H. The Molecular Basis of Antibiotic Action. 1981;Wiley, New York
-
(1981)
The Molecular Basis of Antibiotic Action
-
-
Gale, E.F.1
Cundliffe, E.2
Reynolds, P.E.3
Richmond, M.H.4
Waring, M.H.5
-
14
-
-
0030985913
-
Direct observation of aminoglycoside-RNA interaction by surface plasmon resonance
-
Hendrix M., Priestley E.S., Joyce G.F., Wong C.-H. Direct observation of aminoglycoside-RNA interaction by surface plasmon resonance. J. Am. Chem. Soc. 119:1997;3641-3648
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 3641-3648
-
-
Hendrix, M.1
Priestley, E.S.2
Joyce, G.F.3
Wong, C.-H.4
-
15
-
-
0029449863
-
Determination of nucleotide distances in RNA by means of copper phenanthroline-generated hydroxyl radical cleavage pattern
-
Hermann T., Heumann H. Determination of nucleotide distances in RNA by means of copper phenanthroline-generated hydroxyl radical cleavage pattern. RNA. 1:1995;1009-1017
-
(1995)
RNA
, vol.1
, pp. 1009-1017
-
-
Hermann, T.1
Heumann, H.2
-
16
-
-
0030849184
-
Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme
-
Hermann T., Auffinger P., Scott W.G., Westhof E. Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme. Nucl. Acids Res. 25:1997;3421-3427
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3421-3427
-
-
Hermann, T.1
Auffinger, P.2
Scott, W.G.3
Westhof, E.4
-
17
-
-
0031915278
-
Molecular dynamics investigations of hammerhead ribozyme RNA
-
in the press
-
Hermann T., Auffinger P., Westhof E. Molecular dynamics investigations of hammerhead ribozyme RNA. Eur. Biophys. J. 27:1998;. in the press
-
(1998)
Eur. Biophys. J.
, vol.27
-
-
Hermann, T.1
Auffinger, P.2
Westhof, E.3
-
18
-
-
0027318776
-
Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 a resolution shows bent DNA
-
Jacobo-Molina A., Ding J., Nanni R.G., Clark A.D., Lu X., Tantillo C., Williams R.L., Kamer G., Ferris A.L., Clark C., Hizi A., Hughes S.H., Arnold E. Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA. Proc. Natl Acad. Sci. USA. 89:1993;10763-10767
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 10763-10767
-
-
Jacobo-Molina, A.1
Ding, J.2
Nanni, R.G.3
Clark, A.D.4
Lu, X.5
Tantillo, C.6
Williams, R.L.7
Kamer, G.8
Ferris, A.L.9
Clark, C.10
Hizi, A.11
Hughes, S.H.12
Arnold, E.13
-
19
-
-
0030887815
-
Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex
-
Jiang L., Suri A.K., Fiala R., Patel D.J. Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex. Chem. Biol. 4:1996;35-50
-
(1996)
Chem. Biol.
, vol.4
, pp. 35-50
-
-
Jiang, L.1
Suri, A.K.2
Fiala, R.3
Patel, D.J.4
-
20
-
-
0028881713
-
Polymerase structures and function-variations of a theme
-
Joyce C.M., Steitz T.A. Polymerase structures and function-variations of a theme. J. Bacteriol. 177:1995;6321-6329
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6321-6329
-
-
Joyce, C.M.1
Steitz, T.A.2
-
21
-
-
0031020032
-
Complete identification of nonbridging phosphate oxygens involved in hammerhead cleavage
-
Knöll R., Bald R., Furste J.P. Complete identification of nonbridging phosphate oxygens involved in hammerhead cleavage. RNA. 3:1997;132-140
-
(1997)
RNA
, vol.3
, pp. 132-140
-
-
Knöll, R.1
Bald, R.2
Furste, J.P.3
-
22
-
-
0026693137
-
Crystal structure at 3.5 Å resolution of HIV-1 reverse transcriptase complexed with an inhibitor
-
Kohlstaedt L.A., Wang J., Friedman J.M., Rice P.A., Steitz T.A. Crystal structure at 3.5 Å resolution of HIV-1 reverse transcriptase complexed with an inhibitor. Science. 256:1992;1783-1790
-
(1992)
Science
, vol.256
, pp. 1783-1790
-
-
Kohlstaedt, L.A.1
Wang, J.2
Friedman, J.M.3
Rice, P.A.4
Steitz, T.A.5
-
24
-
-
0029294685
-
In vitro selection of RNA lectins: Using combinatorial chemistry to interpret ribozyme evolution
-
Lato S.M., Boles A.R., Ellington A.D. In vitro selection of RNA lectins using combinatorial chemistry to interpret ribozyme evolution. Chem. Biol. 2:1995;291-303
-
(1995)
Chem. Biol.
, vol.2
, pp. 291-303
-
-
Lato, S.M.1
Boles, A.R.2
Ellington, A.D.3
-
25
-
-
0028842731
-
Divalent metal ions and the internal equilibrium of the hammerhead ribozyme
-
Long D.M., LaRiviere F.J., Uhlenbeck O.C. Divalent metal ions and the internal equilibrium of the hammerhead ribozyme. Biochemistry. 34:1995;14435-14440
-
(1995)
Biochemistry
, vol.34
, pp. 14435-14440
-
-
Long, D.M.1
Lariviere, F.J.2
Uhlenbeck, O.C.3
-
26
-
-
0023238983
-
Interaction of antibiotics with functional sites in 16 S ribosomal RNA
-
Moazed D., Noller H.F. Interaction of antibiotics with functional sites in 16 S ribosomal RNA. Nature. 327:1987;389-394
-
(1987)
Nature
, vol.327
, pp. 389-394
-
-
Moazed, D.1
Noller, H.F.2
-
27
-
-
0031215134
-
An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis
-
Nesbitt S., Hegg L.A., Fedor M.J. An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis. Chem. Biol. 4:1997;619-630
-
(1997)
Chem. Biol.
, vol.4
, pp. 619-630
-
-
Nesbitt, S.1
Hegg, L.A.2
Fedor, M.J.3
-
28
-
-
0026319199
-
Protein folding and association: Insights form the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., Honig B.H. Protein folding and association insights form the interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct. Funct. Genet. 11:1991;281-296
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.H.3
-
29
-
-
0029905917
-
Rapid combinatorial synthesis of aminoglycoside antibiotic mimetics: Use of a polyethylene glycol-linked amine and a neamine-derived aldehyde in multiple component condensation as a strategy for the discovery of new inhibitors of the HIV RNA Rev responsive element
-
Park W.K.C., Auer M., Jaksche H., Wong C.-H. Rapid combinatorial synthesis of aminoglycoside antibiotic mimetics use of a polyethylene glycol-linked amine and a neamine-derived aldehyde in multiple component condensation as a strategy for the discovery of new inhibitors of the HIV RNA Rev responsive element. J. Am. Chem. Soc. 118:1996;10150-10155
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 10150-10155
-
-
Park, W.K.C.1
Auer, M.2
Jaksche, H.3
Wong, C.-H.4
-
30
-
-
0004279414
-
-
California: San Francisco
-
Pearlman D.A., Case D.A., Caldwell J.W., Ross W.S., Cheatham T.E., DeBolt S., Ferguson D., Seibel G., Singh U.C., Weiner P.K., Kollman P.A. AMBER 4. 1. 1994;San Francisco, California
-
(1994)
AMBER 4. 1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham, T.E.5
Debolt, S.6
Ferguson, D.7
Seibel, G.8
Singh, U.C.9
Weiner, P.K.10
Kollman, P.A.11
-
31
-
-
0028049441
-
Structures of ternary complexes of rat DNA polymerase β, a template-primer, and ddCTP
-
Pelletier H., Sawaya M.R., Kumar A., Wilson S.H., Kraut J. Structures of ternary complexes of rat DNA polymerase β, a template-primer, and ddCTP. Science. 264:1994;1891-1903
-
(1994)
Science
, vol.264
, pp. 1891-1903
-
-
Pelletier, H.1
Sawaya, M.R.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
32
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley H.W., Flaherty K.M., McKay D.B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994;68-74
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
33
-
-
0343799864
-
Inhibition of the self-cleavage reaction of the human hepatitis delta virus ribozyme by antibiotics
-
Rogers J., Chang A.H., von Ahsen U., Schroeder R., Davies J. Inhibition of the self-cleavage reaction of the human hepatitis delta virus ribozyme by antibiotics. J. Mol. Biol. 259:1996;916-925
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 916-925
-
-
Rogers, J.1
Chang, A.H.2
Von Ahsen, U.3
Schroeder, R.4
Davies, J.5
-
34
-
-
0003008731
-
Interaction of aminoglycoside antibiotics with RNA
-
Schroeder R., von Ahsen U. Interaction of aminoglycoside antibiotics with RNA. Nucl. Acids Mol. Biol. 10:1996;53-74
-
(1996)
Nucl. Acids Mol. Biol.
, vol.10
, pp. 53-74
-
-
Schroeder, R.1
Von Ahsen, U.2
-
35
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleava0ge
-
Scott W.G., Finch J.T., Klug A. The crystal structure of an all-RNA hammerhead ribozyme a proposed mechanism for RNA catalytic cleava0ge. Cell. 81:1995;991-1002
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
36
-
-
0030476765
-
Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme
-
Scott W.G., Murray J.B., Arnold J.R.P., Stoddard B.L., Klug A. Capturing the structure of a catalytic RNA intermediate the hammerhead ribozyme. Science. 274:1996;2065-2069
-
(1996)
Science
, vol.274
, pp. 2065-2069
-
-
Scott, W.G.1
Murray, J.B.2
Arnold, J.R.P.3
Stoddard, B.L.4
Klug, A.5
-
37
-
-
0029881023
-
Structural and mechanistic relationships between nucleic acid polymerases
-
Sousa R. Structural and mechanistic relationships between nucleic acid polymerases. Trends Biochem. Sci. 21:1996;186-190
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 186-190
-
-
Sousa, R.1
-
38
-
-
0027163526
-
Crystal structure of bacteriophage T7 RNA polymerase at 3.3 Å resolution
-
Sousa R., Chung Y.J., Rose J.P., Wang B.C. Crystal structure of bacteriophage T7 RNA polymerase at 3.3 Å resolution. Nature. 364:1993;593-599
-
(1993)
Nature
, vol.364
, pp. 593-599
-
-
Sousa, R.1
Chung, Y.J.2
Rose, J.P.3
Wang, B.C.4
-
39
-
-
0029258393
-
Inhibition of the hammerhead ribozyme by neomycin
-
Stage T.K., Hertel K.J., Uhlenbeck O.C. Inhibition of the hammerhead ribozyme by neomycin. RNA. 1:1995;95-101
-
(1995)
RNA
, vol.1
, pp. 95-101
-
-
Stage, T.K.1
Hertel, K.J.2
Uhlenbeck, O.C.3
-
40
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz T.A., Steitz J.A. A general two-metal-ion mechanism for catalytic RNA. Proc. Natl Acad. Sci. USA. 90:1993;6498-6502
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
41
-
-
0029985347
-
The environment of two metal ions surrounding the splice site of a group I intron
-
Streicher B., Westhof E., Schroeder R. The environment of two metal ions surrounding the splice site of a group I intron. EMBO J. 15:1996;2556-2564
-
(1996)
EMBO J.
, vol.15
, pp. 2556-2564
-
-
Streicher, B.1
Westhof, E.2
Schroeder, R.3
-
42
-
-
0027906281
-
Microscopic protonation constants in tobramycin: An NMR and pH study with the aid of partially N-acetylated derivatives
-
Szilagyi L., Pusztahelyi Z.S., Jakab S., Kovacs I. Microscopic protonation constants in tobramycin An NMR and pH study with the aid of partially N-acetylated derivatives. Carbohydr. Res. 247:1993;99-109
-
(1993)
Carbohydr. Res.
, vol.247
, pp. 99-109
-
-
Szilagyi, L.1
Pusztahelyi, Z.S.2
Jakab, S.3
Kovacs, I.4
-
44
-
-
0030930212
-
Electrostatic interactions in RNA-aminoglycosides binding
-
Wang H., Tor Y. Electrostatic interactions in RNA-aminoglycosides binding. J. Am. Chem. Soc. 119:1997;8734-8735
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 8734-8735
-
-
Wang, H.1
Tor, Y.2
-
45
-
-
85030338301
-
RNA-aminoglycoside interactions: The design, synthesis and RNA binding of "amino-aminoglycosides"
-
in the press
-
Wang H., Tor Y. RNA-aminoglycoside interactions the design, synthesis and RNA binding of "amino-aminoglycosides" Angew. Chem. 1997;. in the press
-
(1997)
Angew. Chem.
-
-
Wang, H.1
Tor, Y.2
-
46
-
-
0030838564
-
Dimeric aminoglycosides: Design, synthesis and RNA binding
-
Wang H., Tor Y. Dimeric aminoglycosides design, synthesis and RNA binding. Bioorg. Med. Chem. Letters. 7:1997;1951-1956
-
(1997)
Bioorg. Med. Chem. Letters
, vol.7
, pp. 1951-1956
-
-
Wang, H.1
Tor, Y.2
-
47
-
-
0031587827
-
Crystal structure of a pol α family replication DNA polymerase from bacteriophage RB69
-
Wang J., Sattar A.K.M.A., Wang C.C., Karam J.D., Konigsberg W.H., Steitz T.A. Crystal structure of a pol α family replication DNA polymerase from bacteriophage RB69. Cell. 89:1997;1087-1099
-
(1997)
Cell
, vol.89
, pp. 1087-1099
-
-
Wang, J.1
Sattar, A.K.M.A.2
Wang, C.C.3
Karam, J.D.4
Konigsberg, W.H.5
Steitz, T.A.6
-
48
-
-
0029294539
-
Specific binding of aminoglycoside antibiotics to RNA
-
Wang Y., Rando R.R. Specific binding of aminoglycoside antibiotics to RNA. Chem. Biol. 2:1995;281-290
-
(1995)
Chem. Biol.
, vol.2
, pp. 281-290
-
-
Wang, Y.1
Rando, R.R.2
-
49
-
-
0030087981
-
A non-canonical base pair within the human immunodeficiency virus Rev-responsive element is involved in both Rev and small molecule recognition
-
Werstuck G., Zapp M.L., Green M.R. A non-canonical base pair within the human immunodeficiency virus Rev-responsive element is involved in both Rev and small molecule recognition. Chem. Biol. 3:1996;129-137
-
(1996)
Chem. Biol.
, vol.3
, pp. 129-137
-
-
Werstuck, G.1
Zapp, M.L.2
Green, M.R.3
-
50
-
-
0030967825
-
Metal ions play a passive role in the hairpin ribozyme catalysed reaction
-
Young K.J., Gill F., Grasby J.A. Metal ions play a passive role in the hairpin ribozyme catalysed reaction. Nucl. Acids Res. 25:1997;3760-3766
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3760-3766
-
-
Young, K.J.1
Gill, F.2
Grasby, J.A.3
-
51
-
-
0027370433
-
Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production
-
Zapp M.L., Stern S., Green M.R. Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production. Cell. 74:1993;969-978
-
(1993)
Cell
, vol.74
, pp. 969-978
-
-
Zapp, M.L.1
Stern, S.2
Green, M.R.3
|