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Volumn 45, Issue 3, 2008, Pages 266-277

A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences

Author keywords

Genomes; Molecular markers; Oomycetes; Phylogeny; Phytophthora infestans; Phytophthora ramorum; Phytophthora sojae

Indexed keywords

ARTICLE; FUNGAL GENETICS; FUNGAL PLANT DISEASE; GENE LOCUS; GENE SEQUENCE; GENETIC MARKER; GENOME; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYTOPHTHORA; PRIORITY JOURNAL;

EID: 38849202384     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2007.10.010     Document Type: Article
Times cited : (402)

References (90)
  • 1
    • 38849167233 scopus 로고    scopus 로고
    • Abad, Z.G., Abad, J.A., Coffey, M.D., Oudemans, P.V., Man in't Veld, W.A., de Gruyter, H., Cunnington, J., Louws, F.J., 2007. Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose, and strawberry in three continents. Mycologia, in press.
    • Abad, Z.G., Abad, J.A., Coffey, M.D., Oudemans, P.V., Man in't Veld, W.A., de Gruyter, H., Cunnington, J., Louws, F.J., 2007. Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose, and strawberry in three continents. Mycologia, in press.
  • 2
    • 3142752092 scopus 로고    scopus 로고
    • The hAT-like DNA transposon DodoPi resides in a cluster of retro- and DNA transposons in the stramenopile Phytophthora infestans
    • Ah Fong A.M.V., and Judelson H. The hAT-like DNA transposon DodoPi resides in a cluster of retro- and DNA transposons in the stramenopile Phytophthora infestans. Mol. Gen. Genomics 271 (2004) 577-585
    • (2004) Mol. Gen. Genomics , vol.271 , pp. 577-585
    • Ah Fong, A.M.V.1    Judelson, H.2
  • 5
    • 0002229016 scopus 로고
    • Current questions in Phytophthora systematics: the role of the population approach
    • Lucas J.A., Shattock R.C., Shaw D.S., and Cooke L.R. (Eds), Cambridge University Press, New York
    • Brasier C.M. Current questions in Phytophthora systematics: the role of the population approach. In: Lucas J.A., Shattock R.C., Shaw D.S., and Cooke L.R. (Eds). Phytophthora (1991), Cambridge University Press, New York 104-128
    • (1991) Phytophthora , pp. 104-128
    • Brasier, C.M.1
  • 6
    • 24044514979 scopus 로고    scopus 로고
    • Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK
    • Brasier C.M., Beales P.A., Kirk S.A., Denman S., and Rose J. Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK. Mycol. Res. 109 (2005) 853-859
    • (2005) Mycol. Res. , vol.109 , pp. 853-859
    • Brasier, C.M.1    Beales, P.A.2    Kirk, S.A.3    Denman, S.4    Rose, J.5
  • 7
    • 6344220063 scopus 로고    scopus 로고
    • Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees
    • Brasier C.M., Kirk S.A., Delcan J., Cooke D.E.L., Jung T., and Man in't Veld W.A. Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees. Mycol. Res. 108 (2004) 1172-1184
    • (2004) Mycol. Res. , vol.108 , pp. 1172-1184
    • Brasier, C.M.1    Kirk, S.A.2    Delcan, J.3    Cooke, D.E.L.4    Jung, T.5    Man in't Veld, W.A.6
  • 8
    • 0038283182 scopus 로고    scopus 로고
    • Phytophthora inundata sp. nov., a part heterothallic pathogen of trees and shrubs in wet or flooded soils
    • Brasier C.M., Sanchez-Hernandez E., and Kirk S.A. Phytophthora inundata sp. nov., a part heterothallic pathogen of trees and shrubs in wet or flooded soils. Mycol. Res. 107 (2003) 477-484
    • (2003) Mycol. Res. , vol.107 , pp. 477-484
    • Brasier, C.M.1    Sanchez-Hernandez, E.2    Kirk, S.A.3
  • 9
    • 0000962734 scopus 로고
    • Spontaneous variability of single isolates of Phytophthora infestans. I. Cultural variation
    • Caten C.E., and Jinks J.L. Spontaneous variability of single isolates of Phytophthora infestans. I. Cultural variation. Can. J. Bot. 45 (1968) 329-348
    • (1968) Can. J. Bot. , vol.45 , pp. 329-348
    • Caten, C.E.1    Jinks, J.L.2
  • 11
    • 0001691709 scopus 로고    scopus 로고
    • Evolutionary relationships among Phytophthora species deduced from rDNA sequence analysis
    • Crawford A.R., Bassam B.J., Drenth A., Maclean D.J., and Irwin J.A.G. Evolutionary relationships among Phytophthora species deduced from rDNA sequence analysis. Mycol. Res. 100 (1996) 437-443
    • (1996) Mycol. Res. , vol.100 , pp. 437-443
    • Crawford, A.R.1    Bassam, B.J.2    Drenth, A.3    Maclean, D.J.4    Irwin, J.A.G.5
  • 12
    • 32444445646 scopus 로고    scopus 로고
    • Concerted evolution of a tandemly arrayed family of mating-specific genes in Phytophthora analyzed through inter- and intraspecific comparisons
    • Cvitanich C., Salcido M., and Judelson H. Concerted evolution of a tandemly arrayed family of mating-specific genes in Phytophthora analyzed through inter- and intraspecific comparisons. Mol. Gen. Genomics 275 (2006) 169-184
    • (2006) Mol. Gen. Genomics , vol.275 , pp. 169-184
    • Cvitanich, C.1    Salcido, M.2    Judelson, H.3
  • 13
    • 20144388037 scopus 로고    scopus 로고
    • New species of Pythium and Phytophthora
    • de Cock A.W.A.M., and Levesque C.A. New species of Pythium and Phytophthora. Stud. Mycol. 50 (2004) 481-487
    • (2004) Stud. Mycol. , vol.50 , pp. 481-487
    • de Cock, A.W.A.M.1    Levesque, C.A.2
  • 14
    • 33746060205 scopus 로고    scopus 로고
    • Phytophthora captiosa sp. nov. and P. fallax sp. nov. causing crown dieback of Eucalyptus in New Zealand
    • Dick M.A., Dobbie K., Cooke D.E.L., and Brasier C.M. Phytophthora captiosa sp. nov. and P. fallax sp. nov. causing crown dieback of Eucalyptus in New Zealand. Mycol. Res. 110 (2006) 393-404
    • (2006) Mycol. Res. , vol.110 , pp. 393-404
    • Dick, M.A.1    Dobbie, K.2    Cooke, D.E.L.3    Brasier, C.M.4
  • 15
    • 0002192068 scopus 로고
    • Phylum oomycota
    • Margulis L., Corliss J.O., Melkonian M., and Chapman D.J. (Eds), Jones and Bartlett Publishers, Boston
    • Dick M.W. Phylum oomycota. In: Margulis L., Corliss J.O., Melkonian M., and Chapman D.J. (Eds). Handbook of Protoctista (1990), Jones and Bartlett Publishers, Boston 661-685
    • (1990) Handbook of Protoctista , pp. 661-685
    • Dick, M.W.1
  • 16
    • 0002449361 scopus 로고    scopus 로고
    • The Peronosporomycetes
    • McLaughlin D., McLaughlin E., and Lemke P. (Eds), Springer-Verlag, New York
    • Dick M.W. The Peronosporomycetes. In: McLaughlin D., McLaughlin E., and Lemke P. (Eds). The Mycota (2001), Springer-Verlag, New York 39-72
    • (2001) The Mycota , pp. 39-72
    • Dick, M.W.1
  • 17
    • 0033503215 scopus 로고    scopus 로고
    • 18S rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae
    • Dick M.W., Vick M.C., Gibbings J.G., Hedderson T.A., and Lopez Lastra C.C. 18S rDNA for species of Leptolegnia and other Peronosporomycetes: justification for the subclass taxa Saprolegniomycetidae and Peronosporomycetidae and division of the Saprolegniaceae sensu lato into the Leptolegniaceae and Saprolegniaceae. Mycol. Res. 103 (1999) 1119-1125
    • (1999) Mycol. Res. , vol.103 , pp. 1119-1125
    • Dick, M.W.1    Vick, M.C.2    Gibbings, J.G.3    Hedderson, T.A.4    Lopez Lastra, C.C.5
  • 19
    • 38849109842 scopus 로고    scopus 로고
    • Drummond, A.J., Rambaut, A., 2006. BEAST version 1.4. Available from: .
    • Drummond, A.J., Rambaut, A., 2006. BEAST version 1.4. Available from: .
  • 21
    • 34447254003 scopus 로고    scopus 로고
    • Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants
    • Feliner G.N., and Rossello J.A. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Mol. Phylogenet. Evol. 44 (2007) 911-919
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 911-919
    • Feliner, G.N.1    Rossello, J.A.2
  • 22
    • 38849098166 scopus 로고    scopus 로고
    • Felsenstein, J., 2005. PHYLIP version 3.6. Available from: .
    • Felsenstein, J., 2005. PHYLIP version 3.6. Available from: .
  • 23
    • 0000167965 scopus 로고
    • Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution
    • Förster H., Coffey M.D., Elwood H.J., and Sogin M.L. Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution. Mycologia 82 (1990) 306-312
    • (1990) Mycologia , vol.82 , pp. 306-312
    • Förster, H.1    Coffey, M.D.2    Elwood, H.J.3    Sogin, M.L.4
  • 24
    • 0033735445 scopus 로고    scopus 로고
    • Phylogenetic relationships of Phytophthora species based on ITS1 DNA sequence analysis with emphasis on Waterhouse groups V and VI
    • Förster H., Cummings M.P., and Coffey M.D. Phylogenetic relationships of Phytophthora species based on ITS1 DNA sequence analysis with emphasis on Waterhouse groups V and VI. Mycol. Res. 104 (2000) 1055-1061
    • (2000) Mycol. Res. , vol.104 , pp. 1055-1061
    • Förster, H.1    Cummings, M.P.2    Coffey, M.D.3
  • 25
    • 0031741483 scopus 로고    scopus 로고
    • Evolutionary relationships in Aspergillus section Fumigati from partial beta-tubulin and hydrophobin DNA sequences
    • Geiser D.M., Frisvad J.C., and Taylor J.W. Evolutionary relationships in Aspergillus section Fumigati from partial beta-tubulin and hydrophobin DNA sequences. Mycologia 90 (1998) 831-845
    • (1998) Mycologia , vol.90 , pp. 831-845
    • Geiser, D.M.1    Frisvad, J.C.2    Taylor, J.W.3
  • 26
    • 33751583804 scopus 로고    scopus 로고
    • Phytophthora Genomics: the plant destroyers' genome decoded
    • Govers F., and Gijzen M. Phytophthora Genomics: the plant destroyers' genome decoded. Mol. Plant-Microbe Int. 19 (2006) 1295-1301
    • (2006) Mol. Plant-Microbe Int. , vol.19 , pp. 1295-1301
    • Govers, F.1    Gijzen, M.2
  • 27
    • 33947732976 scopus 로고    scopus 로고
    • Phytophthora austrocedrae sp. nov., a new species associated with Austrocedrus chilensis mortality in Patagonia (Argentina)
    • Greslebin A.G., Hansen E.M., and Sutton W. Phytophthora austrocedrae sp. nov., a new species associated with Austrocedrus chilensis mortality in Patagonia (Argentina). Mycol. Res. 111 (2007) 308-316
    • (2007) Mycol. Res. , vol.111 , pp. 308-316
    • Greslebin, A.G.1    Hansen, E.M.2    Sutton, W.3
  • 29
    • 33748924018 scopus 로고    scopus 로고
    • Phytophthora cinnamomi
    • Hardham A.R. Phytophthora cinnamomi. Mol. Plant Pathol. 6 (2005) 589-604
    • (2005) Mol. Plant Pathol. , vol.6 , pp. 589-604
    • Hardham, A.R.1
  • 30
    • 4744374045 scopus 로고    scopus 로고
    • Lateral gene transfer and the complex distribution of insertions in eukaryotic enolase
    • Harper J.T., and Keeling P.J. Lateral gene transfer and the complex distribution of insertions in eukaryotic enolase. Gene 340 (2004) 227-235
    • (2004) Gene , vol.340 , pp. 227-235
    • Harper, J.T.1    Keeling, P.J.2
  • 31
    • 0000767768 scopus 로고    scopus 로고
    • A COX2 molecular phylogeny of the Peronosporomycetes
    • Hudspeth D.S.S., Nadler S.A., and Hudspeth M.E.S. A COX2 molecular phylogeny of the Peronosporomycetes. Mycologia 92 (2000) 674-684
    • (2000) Mycologia , vol.92 , pp. 674-684
    • Hudspeth, D.S.S.1    Nadler, S.A.2    Hudspeth, M.E.S.3
  • 32
    • 2542428731 scopus 로고    scopus 로고
    • AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum
    • Ivors K.L., Hayden K.J., Bonants P.J.M., Rizzo D.M., and Garbelotto M. AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum. Mycol. Res. 108 (2004) 378-392
    • (2004) Mycol. Res. , vol.108 , pp. 378-392
    • Ivors, K.L.1    Hayden, K.J.2    Bonants, P.J.M.3    Rizzo, D.M.4    Garbelotto, M.5
  • 34
    • 0036667692 scopus 로고    scopus 로고
    • Sequence variation and genomic amplification of a family of Gypsy-like elements in the Oomycete genus Phytophthora
    • Judelson H.S. Sequence variation and genomic amplification of a family of Gypsy-like elements in the Oomycete genus Phytophthora. Mol. Biol. Evol. 19 (2002) 1313-1322
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1313-1322
    • Judelson, H.S.1
  • 35
    • 11144348955 scopus 로고    scopus 로고
    • The spores of Phytophthora: weapons of the plant destroyer
    • Judelson H.S., and Blanco F.A. The spores of Phytophthora: weapons of the plant destroyer. Nat. Rev. Microbiol. 3 (2005) 47-58
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 47-58
    • Judelson, H.S.1    Blanco, F.A.2
  • 36
  • 37
    • 0041423446 scopus 로고    scopus 로고
    • Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe
    • Jung T., Nechwatal J., Cooke D.E.L., Hartmann G., Blaschke M., Oswald W.F., Duncan J.M., and Delatour C. Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe. Mycol. Res. 107 (2003) 772-789
    • (2003) Mycol. Res. , vol.107 , pp. 772-789
    • Jung, T.1    Nechwatal, J.2    Cooke, D.E.L.3    Hartmann, G.4    Blaschke, M.5    Oswald, W.F.6    Duncan, J.M.7    Delatour, C.8
  • 38
    • 0037987953 scopus 로고    scopus 로고
    • Molecular genetics of pathogenic Oomycetes
    • Kamoun S. Molecular genetics of pathogenic Oomycetes. Eukaryot. Cell 2 (2003) 191-199
    • (2003) Eukaryot. Cell , vol.2 , pp. 191-199
    • Kamoun, S.1
  • 39
    • 33748083700 scopus 로고    scopus 로고
    • Plant pathogen culture collections: it takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology
    • Kang S., Blair J.E., Geiser D.M., Khang C.-H., Park S.-Y., Gahegan M., O'Donnell K., Luster D.G., Kim S.H., Ivors K.L., et al. Plant pathogen culture collections: it takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology. Phytopathology 96 (2006) 920-925
    • (2006) Phytopathology , vol.96 , pp. 920-925
    • Kang, S.1    Blair, J.E.2    Geiser, D.M.3    Khang, C.-H.4    Park, S.-Y.5    Gahegan, M.6    O'Donnell, K.7    Luster, D.G.8    Kim, S.H.9    Ivors, K.L.10
  • 40
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino H., and Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J. Mol. Evol. 29 (1989) 170-179
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 43
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
    • (2004) Brief. Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 44
    • 0026764455 scopus 로고
    • Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA
    • Lee S.B., and Taylor J.W. Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol. Biol. Evol. 9 (1992) 636-653
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 636-653
    • Lee, S.B.1    Taylor, J.W.2
  • 46
    • 0033983545 scopus 로고    scopus 로고
    • Compartment-specific isoforms of TPI and GAPDH are imported into diatom mitochondria as a fusion protein: evidence in favor of a mitochondrial origin of the eukaryotic glycolytic pathway
    • Liaud M.-F., Lichtl C., Apt K., Martin W., and Cerff R. Compartment-specific isoforms of TPI and GAPDH are imported into diatom mitochondria as a fusion protein: evidence in favor of a mitochondrial origin of the eukaryotic glycolytic pathway. Mol. Biol. Evol. 17 (2000) 213-223
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 213-223
    • Liaud, M.-F.1    Lichtl, C.2    Apt, K.3    Martin, W.4    Cerff, R.5
  • 48
    • 34547159778 scopus 로고    scopus 로고
    • Gene flow analysis demonstrates that Phytophthora fragariae var. rubi constitutes a distinct species, Phytophthora rubi comb.nov
    • Man in't Veld W.A. Gene flow analysis demonstrates that Phytophthora fragariae var. rubi constitutes a distinct species, Phytophthora rubi comb.nov. Mycologia 99 (2007) 222-226
    • (2007) Mycologia , vol.99 , pp. 222-226
    • Man in't Veld, W.A.1
  • 49
    • 0037656232 scopus 로고    scopus 로고
    • Phylogenetic relationships among Phytophthora species inferred from sequence analysis of the mitochondrially-encoded cytochrome oxidase I and II genes
    • Martin F.N., and Tooley P.W. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of the mitochondrially-encoded cytochrome oxidase I and II genes. Mycologia 95 (2003) 269-284
    • (2003) Mycologia , vol.95 , pp. 269-284
    • Martin, F.N.1    Tooley, P.W.2
  • 50
    • 1342268901 scopus 로고    scopus 로고
    • Phylogenetic relationships of Phytophthora ramorum, P. nemorosa, and P. pseudosyringae, three species recovered from areas in California with sudden oak death
    • Martin F.N., and Tooley P.W. Phylogenetic relationships of Phytophthora ramorum, P. nemorosa, and P. pseudosyringae, three species recovered from areas in California with sudden oak death. Mycol. Res. 107 (2003) 1379-1391
    • (2003) Mycol. Res. , vol.107 , pp. 1379-1391
    • Martin, F.N.1    Tooley, P.W.2
  • 51
    • 2542482828 scopus 로고    scopus 로고
    • Molecular detection of Phytophthora ramorum, the causal agent of sudden oak death in California, and two additional species commonly recovered from diseased plant material
    • Martin F.N., Tooley P.W., and Blomquist C. Molecular detection of Phytophthora ramorum, the causal agent of sudden oak death in California, and two additional species commonly recovered from diseased plant material. Phytopathology 94 (2004) 621-631
    • (2004) Phytopathology , vol.94 , pp. 621-631
    • Martin, F.N.1    Tooley, P.W.2    Blomquist, C.3
  • 52
    • 0035201674 scopus 로고    scopus 로고
    • Phytophthora pistaciae sp. nov. and P. melonis: the principal causes of pistachio gummosis in Iran
    • Mirabolfathy M., Cooke D.E.L., Duncan J.M., Williams N.A., Ershad D., and Alizadeh A. Phytophthora pistaciae sp. nov. and P. melonis: the principal causes of pistachio gummosis in Iran. Mycol. Res. 105 (2001) 1166-1175
    • (2001) Mycol. Res. , vol.105 , pp. 1166-1175
    • Mirabolfathy, M.1    Cooke, D.E.L.2    Duncan, J.M.3    Williams, N.A.4    Ershad, D.5    Alizadeh, A.6
  • 53
    • 0029141337 scopus 로고
    • Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences
    • Moncalvo J.-M., Wang H.-H., and Hseu R.-S. Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia 87 (1995) 223-238
    • (1995) Mycologia , vol.87 , pp. 223-238
    • Moncalvo, J.-M.1    Wang, H.-H.2    Hseu, R.-S.3
  • 54
    • 38849129802 scopus 로고    scopus 로고
    • Newhook, F.J., Waterhouse, G.M., Stamps, D.J., 1978. Tabular key to the species of Phytophthora de Bary. Mycol. Papers No. 143.
    • Newhook, F.J., Waterhouse, G.M., Stamps, D.J., 1978. Tabular key to the species of Phytophthora de Bary. Mycol. Papers No. 143.
  • 56
    • 0034489235 scopus 로고    scopus 로고
    • Phylogeny of the Peronosporomycetes (Oomycota) based on partial sequences of the large ribosomal subunit (LSU rDNA)
    • Peterson A.B., and Rosendahl S. Phylogeny of the Peronosporomycetes (Oomycota) based on partial sequences of the large ribosomal subunit (LSU rDNA). Mycol. Res. 104 (2000) 1295-1303
    • (2000) Mycol. Res. , vol.104 , pp. 1295-1303
    • Peterson, A.B.1    Rosendahl, S.2
  • 57
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 59
    • 38849091151 scopus 로고    scopus 로고
    • Rambaut, A., Drummond, A.J., 2004. Tracer version 1.3. Available from: .
    • Rambaut, A., Drummond, A.J., 2004. Tracer version 1.3. Available from: .
  • 61
    • 38849106648 scopus 로고    scopus 로고
    • Ribeiro, O.K., 1978. A Source Book of the Genus Phytophthora. J. Cramer, Vaduz, Liechtenstein.
    • Ribeiro, O.K., 1978. A Source Book of the Genus Phytophthora. J. Cramer, Vaduz, Liechtenstein.
  • 62
    • 0036769336 scopus 로고    scopus 로고
    • Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences
    • Riethmüller A., Voglmayr H., Goker M., Weiss M., and Oberwinkler F. Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia 94 (2002) 834-849
    • (2002) Mycologia , vol.94 , pp. 834-849
    • Riethmüller, A.1    Voglmayr, H.2    Goker, M.3    Weiss, M.4    Oberwinkler, F.5
  • 63
    • 0033501910 scopus 로고    scopus 로고
    • Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit ribosomal DNA sequences
    • Riethmüller A., Weiss M., and Oberwinkler F. Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit ribosomal DNA sequences. Can. J. Bot. 77 (1999) 1790-1800
    • (1999) Can. J. Bot. , vol.77 , pp. 1790-1800
    • Riethmüller, A.1    Weiss, M.2    Oberwinkler, F.3
  • 64
    • 2542461375 scopus 로고    scopus 로고
    • Sudden oak death: endangering California and Oregon forest ecosystems
    • Rizzo D.M., and Garbelotto M. Sudden oak death: endangering California and Oregon forest ecosystems. Front. Ecol. Environ. 1 (2003) 197-204
    • (2003) Front. Ecol. Environ. , vol.1 , pp. 197-204
    • Rizzo, D.M.1    Garbelotto, M.2
  • 65
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 66
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S., and Misener S. (Eds), Humana Press, Totowa, NJ
    • Rozen S., and Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 67
    • 0002494717 scopus 로고
    • Fungal chromosomes as observed with the light microscope
    • Rayner A.D.M., Brasier C.M., and Moore D. (Eds), Cambridge University Press, Cambridge
    • Sansome E.R. Fungal chromosomes as observed with the light microscope. In: Rayner A.D.M., Brasier C.M., and Moore D. (Eds). Evolutionary Biology of the Fungi (1987), Cambridge University Press, Cambridge 97-113
    • (1987) Evolutionary Biology of the Fungi , pp. 97-113
    • Sansome, E.R.1
  • 68
    • 33748363887 scopus 로고    scopus 로고
    • Detection and quantification of Phytophthora ramorum, P. kernoviae, P. citricola and P. quercina in symptomatic leaves by multiplex real-time PCR
    • Schena L., Hughes K.J.D., and Cooke D.E.L. Detection and quantification of Phytophthora ramorum, P. kernoviae, P. citricola and P. quercina in symptomatic leaves by multiplex real-time PCR. Mol. Plant Pathol. 7 (2006) 365-379
    • (2006) Mol. Plant Pathol. , vol.7 , pp. 365-379
    • Schena, L.1    Hughes, K.J.D.2    Cooke, D.E.L.3
  • 69
    • 0842274381 scopus 로고    scopus 로고
    • The avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene rps1b
    • Shan W., Cao M., Leung D., and Tyler B.M. The avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene rps1b. Mol. Plant-Microbe Int. 17 (2004) 394-403
    • (2004) Mol. Plant-Microbe Int. , vol.17 , pp. 394-403
    • Shan, W.1    Cao, M.2    Leung, D.3    Tyler, B.M.4
  • 70
    • 0842348167 scopus 로고    scopus 로고
    • Construction of a bacterial artificial chromosome library, determination of genome size, and characterization of an Hsp70 gene family in Phytophthora nicotianae
    • Shan W., and Hardham A.R. Construction of a bacterial artificial chromosome library, determination of genome size, and characterization of an Hsp70 gene family in Phytophthora nicotianae. Fungal Genet. Biol. 41 (2004) 369-380
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 369-380
    • Shan, W.1    Hardham, A.R.2
  • 71
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 72
    • 0031893975 scopus 로고    scopus 로고
    • Evolution of the protists and protistan parasites from the perspective of molecular systematics
    • Sogin M.L., and Silberman J.D. Evolution of the protists and protistan parasites from the perspective of molecular systematics. Int. J. Parasitol. 28 (1998) 11-20
    • (1998) Int. J. Parasitol. , vol.28 , pp. 11-20
    • Sogin, M.L.1    Silberman, J.D.2
  • 73
    • 38849201549 scopus 로고    scopus 로고
    • Stamps, D.J., Waterhouse, G.M., Newhook, F.J., Hall, G.S., 1990. Revised tabular key to the species Phytophthora. Mycol. Papers No. 162.
    • Stamps, D.J., Waterhouse, G.M., Newhook, F.J., Hall, G.S., 1990. Revised tabular key to the species Phytophthora. Mycol. Papers No. 162.
  • 74
    • 38849137022 scopus 로고    scopus 로고
    • Swofford, D.L., 1998. PAUP*4.0: Phylogenetic Analysis Using Parsimony. Sinauer Associates, Sunderland, MA.
    • Swofford, D.L., 1998. PAUP*4.0: Phylogenetic Analysis Using Parsimony. Sinauer Associates, Sunderland, MA.
  • 75
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 76
    • 33646005495 scopus 로고    scopus 로고
    • Real-time fluorescent polymerase chain reaction detection of Phytophthora ramorum and Phytophthora pseudosyringae using mitochondrial gene regions
    • Tooley P.W., Martin F.N., Carras M.M., and Frederick R.D. Real-time fluorescent polymerase chain reaction detection of Phytophthora ramorum and Phytophthora pseudosyringae using mitochondrial gene regions. Phytopathology 96 (2006) 336-345
    • (2006) Phytopathology , vol.96 , pp. 336-345
    • Tooley, P.W.1    Martin, F.N.2    Carras, M.M.3    Frederick, R.D.4
  • 77
    • 33846110344 scopus 로고    scopus 로고
    • Phytophthora sojae: root rot pathogen of soybean and model oomycete
    • Tyler B.M. Phytophthora sojae: root rot pathogen of soybean and model oomycete. Mol. Plant Pathol. 8 (2007) 1-8
    • (2007) Mol. Plant Pathol. , vol.8 , pp. 1-8
    • Tyler, B.M.1
  • 79
    • 0030693903 scopus 로고    scopus 로고
    • The tigA gene is a transcriptional fusion of glycolytic genes encoding Triose-Phosphate Isomerase and Glyceraldehyde-3-Phosphate Dehydrogenase in Oomycota
    • Unkles S.E., Logsdon J.M.K.R., Kinghorn J.R., and Duncan J.M. The tigA gene is a transcriptional fusion of glycolytic genes encoding Triose-Phosphate Isomerase and Glyceraldehyde-3-Phosphate Dehydrogenase in Oomycota. J. Bacteriol. 179 (1997) 6816-6823
    • (1997) J. Bacteriol. , vol.179 , pp. 6816-6823
    • Unkles, S.E.1    Logsdon, J.M.K.R.2    Kinghorn, J.R.3    Duncan, J.M.4
  • 80
    • 67650840573 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin sequences
    • Villa N.O., Kageyama K., Asano T., and Suga H. Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin sequences. Mycologia 98 (2006) 410-422
    • (2006) Mycologia , vol.98 , pp. 410-422
    • Villa, N.O.1    Kageyama, K.2    Asano, T.3    Suga, H.4
  • 81
    • 5344260493 scopus 로고    scopus 로고
    • Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform hausteria based on Bayesian analysis of partial LSU rDNA sequence data
    • Voglmayr H., Riethmüller A., Goker M., Weiss M., and Oberwinkler F. Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform hausteria based on Bayesian analysis of partial LSU rDNA sequence data. Mycol. Res. 108 (2004) 1011-1024
    • (2004) Mycol. Res. , vol.108 , pp. 1011-1024
    • Voglmayr, H.1    Riethmüller, A.2    Goker, M.3    Weiss, M.4    Oberwinkler, F.5
  • 82
    • 38849174215 scopus 로고    scopus 로고
    • Waterhouse, G.M., 1963. Key to the species of Phytophthora de Bary. Mycol. Papers No. 92.
    • Waterhouse, G.M., 1963. Key to the species of Phytophthora de Bary. Mycol. Papers No. 92.
  • 83
    • 0002736151 scopus 로고
    • Present criteria for classification of Phytophthora
    • Erwin D.C., Bartnicki-Garcia S., and Tsao P.H. (Eds), APS Press, St. Paul, MN
    • Waterhouse G.M., Newhook F.J., and Stamps D.J. Present criteria for classification of Phytophthora. In: Erwin D.C., Bartnicki-Garcia S., and Tsao P.H. (Eds). Phytophthora: Its Biology, Taxonomy Ecology, and Pathology (1983), APS Press, St. Paul, MN 139-147
    • (1983) Phytophthora: Its Biology, Taxonomy Ecology, and Pathology , pp. 139-147
    • Waterhouse, G.M.1    Newhook, F.J.2    Stamps, D.J.3
  • 85
    • 0344873600 scopus 로고    scopus 로고
    • Phytophthora sojae avirulence genes Avr4 and Avr6 are located in a 24 kb, recombination-rich region of genomic DNA
    • Whisson S.C., Basnayake S., Maclean D.J., Irwin J.A.G., and Drenth A. Phytophthora sojae avirulence genes Avr4 and Avr6 are located in a 24 kb, recombination-rich region of genomic DNA. Fungal Genet. Biol. 41 (2004) 62-74
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 62-74
    • Whisson, S.C.1    Basnayake, S.2    Maclean, D.J.3    Irwin, J.A.G.4    Drenth, A.5
  • 86
    • 29844450483 scopus 로고    scopus 로고
    • Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans
    • Win J., Kanneganti T.-D., Torto-Alalibo T., and Kamoun S. Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans. Fungal Genet. Biol. 43 (2006) 20-33
    • (2006) Fungal Genet. Biol. , vol.43 , pp. 20-33
    • Win, J.1    Kanneganti, T.-D.2    Torto-Alalibo, T.3    Kamoun, S.4
  • 87
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Bioinformatics 13 (1997) 555-556
    • (1997) Bioinformatics , vol.13 , pp. 555-556
    • Yang, Z.1
  • 88
    • 0033545986 scopus 로고    scopus 로고
    • Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors
    • Yun S.-H., Berbee M.L., Yoder O.C., and Turgeon B.G. Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors. Proc. Natl. Acad. Sci. USA 96 (1999) 5592-5597
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 5592-5597
    • Yun, S.-H.1    Berbee, M.L.2    Yoder, O.C.3    Turgeon, B.G.4
  • 89
    • 38849189129 scopus 로고    scopus 로고
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas, Austin.
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas, Austin.
  • 90
    • 38849137021 scopus 로고    scopus 로고
    • Zwickl, D.J., 2007. GARLI version 0.95. Available from: .
    • Zwickl, D.J., 2007. GARLI version 0.95. Available from: .


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