Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data

Mycological Research

Volumn 108, Issue 9, 2004, Pages 1011-1024

  Voglmayr, Hermann ^a   Riethmüller, Alexandra ^b   Göker, Markus ^c   Weiss, Michael ^c   Oberwinkler, Franz ^c  

^a UNIVERSITY OF VIENNA   (Austria)

^b UNIVERSITY OF KASSEL   (Germany)

^c UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COEVOLUTION; FUNGUS; PATHOGEN; PHYLOGENY; SPECIATION (BIOLOGY);

ASTERACEAE; BASIDIOPHORA; BREMIA; BREMIA LACTUCAE; FUNGI; GERANIACEAE; MYXOGASTRIA; PARAPERONOSPORA; PERONOSPORA FARINOSA; PHYTOPHTHORA; PLASMOPARA; PLASMOPARA PYGMAEA; PLASMOPARA SPHAEROSPERMA; PROTOBREMIA;

EID: 5344260493     PISSN: 09537562     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0953756204000954     Document Type: Article

References (40)

1. Bohm, B. A. & Stuessy, T. F. (2001) Flavonoids of the Sunflower Family (Asteraceae). Springer-Verlag, Vienna.
2. Brandenburger, W. (1985) Parasitische Pilze an Gefäßpflanzen in Europa. G. Fischer, Stuttgart.
3. Constantinescu, O. (1979) Revision of Bremiella (Peronosporales). Transactions of the British Mycological Society 72: 510-515.
4. Constantinescu, O. (1989) Peronospora complex on Compositae. Sydowia 41: 79-107.
5. Constantinescu, O. (2004) The nomenclature of Plasmopara (Chromista, Peronosporales) parasitic on Geraniaceae. Taxon 53: 523-525.
6. Constantinescu, O. & Fatehi, J. (2002) Peronospora-like fungi (Chromista, Peronosporales) parasitic on Brassicaceae and related hosts. Nova Hedwigia 74: 291-338.
7. De Bary, A. (1863) Recherches sur le developpement de quelques champignons parasites. Annales de Sciences Naturelles, Botanique, sér.4 20: 5-148.
8. Dick, M. W., Croft, B. J., Margarey, R. C., De Cock, A. W. A. M. & Clark, G. (1989) A new genus of the Verrucalvaceae (Oomycetes). Botanical Journal of the Linnean Society 99: 97-113.
9. Dick, M. W. (2001) Straminipilous Fungi. Kluwer Academic Publishers, Dordrecht.
10. Dick, M. W. (2002) Towards an understanding of the evolution of the downy mildews. In Advances in Downy Mildew Research (D. M. Spencer, U. Gisi & A. Lebeda, eds): 1-57. Kluwer Academic Publishers, Dordrecht.
11. Downie, S. R., Ramanath, S., Katz-Downie, D. S. & Llanas, E. (1998) Molecular systematics of Apiaceae subfamily Apioideae: phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer and plastid rpoc1 intron sequences. American Journal of Botany 85: 563-591.
12. Downie, S. R., Katz-Downie, D. S. & Spalik, K. (2000a) A phylogeny of Apiaceae tribe Scandiceae: evidence from nuclear ribosomal DNA internal transcribed spacer sequences. American Journal of Botany 87: 76-95.
13. Downie, S. R., Katz-Downie, D. S. & Watson, M. F. (2000b) A phylogeny of the flowering plant family Apiaceae based on chlorplast DNA rp116 and rpoc1 intron sequences: towards a supra-generic classification of subfamily Apioideae. American Journal of Botany 87: 273-292.
14. Erwin, D. C. & Ribeiro, O.K. (1996) Phytophthora Diseases Worldwide. American Phytopathological Society Press, St Paul, MN.
15. Fraymouth, J. (1956) Haustoria of the Peronosporales. Transactions of the British Mycological Society 39: 79-107.
16. Göker, M., Voglmayr, H., Riethmüller, A., Weiß, M. & Oberwinkler, F. (2003) Taxonomic aspects of Peronoaporaceae inferred from Bayesian molecular phylogenetics. Canadian Journal of Botany 81: 672-683.
17. Huelsenbeck, J. P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
18. Huelsenbeck, J. P., Larget, B., Miller, R. E. & Ronquist, F. (2002) Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51: 673-688.
19. Kirk, P. M., Cannon, P. F., David, J. C. & Stalpers, J. A. (2001) Ainsworth & Bisby's Dictionary of the Fungi. 9th edn. CAB International, Wallingford.
20. Larget, B. & Simon, D. L. (1999) Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Molecular Biology and Evolution 16: 750-759.
21. Majewski, T. (1968) Plasmopara halstedii s. 1. in Poland. Acta Mycologica 4:215-219.
22. Mau, B., Newton, M. A. & Larget, B. (1999) Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55: 1-12.
23. Novotelnova, N. S. (1962) [Plasmopara halstedii (Farl.) Berl. et de Toni as a cospecies.] Botaniceskij Zhurnal 47: 970-981. [in Russian.]
24. Rambaut, A. (1996) Se-Al. Sequence Alignment Editor. Version 2.0 http://evolve.zoo.ox.ac.uk/software/.
25. Riethmüller, A., Voglmayr, H., Göker, M., Weiß, M. & Oberwinkler, F. (2002) Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia 94: 834-849.
26. Savolainen, V., Chase, M. W., Hoot, S. B., Morton, C. M., Soltis, D. E., Bayer, C., Fay, M. F., Bruijn, A. Y. de, Sullivan, S. & Qiu, Y. L. (2000) Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Systematic Biology 49: 306-362.
27. Sǎvulescu, T. (1941) Die auf Compositen parasitierenden Plasmopara-Arten. Bulletin de la Section Scientifique de l'Académie Roumaine 24: 1-28.
28. Sǎvulescu, T. & Sǎvulescu, O. (1951) Studiul morfologic, biologic şi sistematic al genurilor Sclerospora, Basidiophora, Plasmopara ̧i Peronospora. Bulelin Stiinţific. Academia Republicii Populare Române, Secţiunea de Stiinţe Biologice, Agronomice, Geologice şi Geografice 3: 327-457.
29. Schröter, J. (1889) Die Pilze Schlesiens. In Kryptogamen-Flora von Schlesien (F. Cohn, ed.) 3(1): 1-814. Kern, Breslau.
30. Shaw, C. G. (1981) Taxonomy and evolution. In The Downy Mildews (D. M. Spencer, ed.): 17-29. Academic Press, London.
31. Skalický, V. (1966) Taxonomie der Gattungen der Familie Peronosporaceae. Preslia 38: 117-129.
32. Skidmore, D. I. & Ingram, D.S. (1985) Conidial morphology and specialization of Bremia lactucae Regel (Peronosporaceae) on hosts in the family Compositae. Botanical Journal of the Linnean Society 91: 503-522.
33. Spalik, K., Reduron, J. P. & Downie, S. R. (2004) The phylogenetic position of Peucedanum sensu lato and allied genera and their placement in tribe Selineae (Apiaceae, subfamily Apioideae). Plant Systematics and Evolution 243: 189-210.
34. Swofford, D. L., Olsen, G. J., Waddell, P. J. & Hillis, D. M. (1996) Phylogenetic inference. In Molecular systematics (D. M. Hillis, C. Moritz & B. K. Mable, eds): 407-514. Sinauer Associates, Sunderland, MA.
35. Swofford, D. L. (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), Version 4.0 b10. Sinauer Associates, Sunderland, MA.
36. Unger, F. (1833) Die Exantheme der Pflanzen und einige mit diesen verwandte Krankheiten der Gewächse. Karl Gerold, Vienna.
37. Waterhouse, G. M. (1973) Peronosporales. In The Fungi: an advanced treatise (G. C. Ainsworth, F. K. Sparrow & A. S. Sussman, eds) 4A: 165-183. Academic Press, New York.
38. Wilson, G. W. (1907a) An historical review of the proposed genera of Phycomycetes. Journal of Mycology 13: 205-209.
39. Wilson, G. W. (1907b) Studies in North American Peronosporales II. Phytophthoreae and Rhysotheceae. Bulletin of the Torrey Botanical Club 34: 387-416.
40. Yerkes, D. R. Jr & Shaw, C. G. (1959) Taxonomy of the Peronospora species on Cruciferae and Chenopodiaceae. Phytopathology 49: 499-507.