AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum

Mycological Research

Volumn 108, Issue 4, 2004, Pages 378-392

  Ivors, Kelly L ^a   Hayden, Katherine J ^a   Bonants, Peter J M ^b   Rizzo, David M ^c   Garbelotto, Matteo ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGUS; GENETIC STRUCTURE; PHYLOGENETICS;

EURASIA; EUROPE; NORTH AMERICA;

FUNGI; PHYTOPHTHORA; PHYTOPHTHORA HIBERNALIS; PHYTOPHTHORA LATERALIS; PHYTOPHTHORA RAMORUM; QUERCUS;

EID: 2542428731     PISSN: 09537562     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0953756204009827     Document Type: Article

References (45)

1. Abu-El Samen, F. M., Secor, G. A. & Gudmestad, N. C. (2003) Genetic variation among asexual progeny of Phytophthora infestans detected with RAPD and AFLP markers. Plant Pathology 52: 314-325.
2. Agapow, P. M. & Burt, A. (2001) Indices of multilocus linkage disequilibrium. Molecular Ecology Notes 1: 101-102.
3. Anagnostakis, S. L. (1988) Cryphonectria parasitica cause of chestnut blight. Advances in Plant Pathology 6: 123-136.
4. Bonants, P. J. M., Hagenaar-de Weerdt, M., van Gent-Pelzer, M. P. E., Lacourt, I., Cooke, D. E. L. & Duncan, J. M. (1997) Detection and identification of Phytophthora fragariae Hickman by the polymerase chain reaction. European Journal of Plant Pathology 103:345-355.
5. Brasier, C. M. (1995) Episodic selection as a force in fungal microevolution, with special reference to clonal speciation and hybrid introgression. Canadian Journal of Botany 73 (Suppl. 1): S1213-S1221.
6. Brasier, C. M., Rose, J., Kirk, S. A. & Webber, J. F. (2002) Pathogenicity of Phytophthora ramorum isolates from North America and Europe to bark of European Fagaceae, American Quercus rubra and other forest trees. Paper abstract. Sudden Oak Death Science Symposium, 15-18 December 2002 in Monterey, CA. http://danr. ucop.edu/ihrmp/sodsymp/paper/paper09.html.
7. Brasier, C. M. (2003) Sudden oak death exhibits transatlantic differences. Mycological Research 107: 258-259.
8. Casgrain, P. & Legendre, P. (1999) The R package for multivariate and spatial analysis. University of Montreal, Montreal.
9. Cooke, D. E. L., Drenth, A., Duncan, J. M., Wagels, G. & Brasier, C. M. (2000) A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genetics and Biology 30: 17-32.
10. Davidson, J. M., Werres, S., Garbelotto, M., Hansen, E. M. & Rizzo, D. M. (2003) Sudden oak death and associated diseases caused by Phytophthora ramorum. Online. Plant Health Progress doi: 10.1094/PHP-2003-0707-01-DG.
11. Dobrowolski, M. P., Tommerup, I. C., Chearer, B. L. & O'Brien, P. A. (2003) Three clonal lineages of Phytophthora cinnamomi in Australia revealed by microsatellites. Phytopathology 93: 695-704.
12. Dudzinski, M. J., Old, K. M. & Gibbs, R. J. (1993) Pathogenic variability in Australian isolates of Phytophthora cinnamomi. Australian Journal of Botany 41: 721-732.
13. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
14. Garbelotto, M., Davidson, J. M., Ivors, K., Maloney, P. E., Hüberli, D., Koike, S. T. & Rizzo, D. M. (2003) Non-oak native plants are main hosts for sudden oak death pathogen in California. California Agriculture 57: 18-23.
15. Goodwin, S. B., Spielman, L. J., Matuszak, J. M., Bergeron, S. N. & Fry, W. E. (1992) Clonal diversity and genetic recombination of Phytophthora infestans populations in northern and central Mexico. Phytopathology 82: 955-961.
16. Goodwin, S. B., Cohen, B. A. & Fry, W. E. (1994) Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proceedings of the National Academy of Sciences, USA 91: 11591-11595.
17. Hansen, E. M., Goheen, D. J., Jules, E. S. & Ullian, B. (2000) Managing Port-Orford-Cedar and the introduced pathogen Phytophthora lateralis. Plant Disease 84: 4-10.
18. Hansen, E. M., Reeser, P. W., Sutton, W., Winton, L. & Osterbauer, N. (2003) First report of Al mating type of Phytophthora ramorum in North America. Plant Disease 87: 1267.
19. Hoegger, P. J., Rigling, D., Holdenrieder, O. & Heiniger, U. (2000) Genetic structure of newly established populations of Cryphonectria parasitica. Mycological Research 104: 1108-1116.
20. Jaccard, P. (1908) Nouvelles recherches sur la distribution florale. Bulletin de la Société Vaudoise des Sciences Naturelles 44: 223-270.
21. Jung, T., Nechwatal, J., Cooke, D. E. L., Hartmann, G., Blaschke, M., Oswald, W. F., Duncan, J. M. & Delatour, C. (2003) Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe. Mycological Research 107: 772-789.
22. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001) Mega2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
23. Lamour, K. H. & Hausbeck, M. K. (2001) Investigating the spatio-temporal genetic structure of Phytophthora capsici in Michigan. Phytopathology 91: 973-980.
24. Linde, C., Drenth, A., Kemp, G. H. J., Wingfield, M. J. & von Broembsen, S. L. (1997) Population structure of Phytophthora cinnamomi in South Africa. Phytopathology 87: 822-827.
25. Little, E. L. jr. (1979) Checklist of United States Trees (Native and Naturalized). [Agriculture Handbook no. 541.] USDA, Washington, DC.
26. Martin, F. N. (2000) Phylogenetic relationships among some Pythium species inferred from sequence analysis of the mitochondrially encoded cytochrome oxidase II gene. Mycologia 92: 711-727.
27. Martin, F. N. & Tooley, P. W. (2003) Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95: 269-284.
28. Maynard Smith, J., Smith, N. H., O'Rourke, M. & Spratt, B. G. (1993) How clonal are bacteria? Proceedings of the National Academy of Sciences, USA 90: 4384-4388.
29. Moralejo, E. & Werres, S. (2002) First report of Phytophthora ramorum on Rhododendron sp. in Spain. Plant Disease 86: 1052.
30. Morehouse, E. A., James, T. Y., Ganley, A. R. D., Vilgalys, R., Berger, L., Murphy, P. J. & Longcore, J. E. (2003) Multilocus sequence typing suggests the chytrid pathogen of amphibian is a recently emerged clone. Molecular Ecology 12: 395-403.
31. Péros, J.-P., Berger, G. & Lahogue, F. (1997) Variation in pathogenicity and genetic structure in the Eutypa lata population of a single vineyard. Phytopathology 87: 799-806.
32. Pogoda, F. & Werres, S. (2002) Pathogenicity of European and American Phytophthora ramorum isolates to Rhododendron. Poster abstract. Sudden Oak Death Science Symposium, 15-18 December 2002 in Monterey, CA. http://danr.ucop.edu/ihrmp/sodsymp/ poster/poster26.html.
33. Rambaut, A. (1996) Se-Al: Sequence Alignment Editor. http://evolve. zoo.ox.ac.uk/software.html.
34. Redecker, D., Szaro, T. M., Bowman, R. J. & Bruns, T. D. (2001) Small genets of Lactarius xanthogalactus, Russula cremoricolor and Amanita francheti in late-stage ectomycorrhizal successions. Molecular Ecology 10: 1025-1034.
35. Rizzo, D. M., Garbelotto, M., Davidson, J. M., Slaughter, G. W. & Koike, S. (2002) Phytophthora ramorum as the cause of extensive mortality of Quercus spp. and Lithocarpus densiflorus in California. Plant Disease 86: 205-214.
36. Rizzo, D. M. & Garbelotto, M. (2003) Sudden oak death: endangering California and Oregon forest ecosystems. Frontiers in Ecology and the Environment 1: 197-204.
37. Sansome, E. (1980) Reciprocal translocation heterozygosity in heterothallic species of Phytophthora and its significance. Transactions of the British Mycological Society 74: 175-185.
38. Swofford, D. L. (2002) PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, MA.
39. Tooley, P. W., Fry, W. E. & Villareal Gonzalez, M. J. (1985) Isozyme characterization of sexual and asexual Phytophthora infestans populations. Journal of Heredity 76: 431-435.
40. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. & Zabeau, M. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
41. Werres, S., Marwitz, R., Man in't Veld, W. A., De Cock, A. W. A. M., Bonants, P. J. M., de Weerdt, M., Themann, K., Ilieva, E. & Baayen, R. P. (2001) Phytophthora ramorum sp. nov., a new pathogen on Rhododendron and Viburnum. Mycological Research 105: 1155-1165.
42. Werres, S. & de Merlier, D. (2003) First detection of Phytophthora ramorum mating type A2 in Europe. Plant Disease 87: 1266.
43. Werres, S. & Zielke, B. (2003) First studies on the pairing of Phytophthora ramorum. Journal of Plant Disease and Protection 110: 129-130.
44. White, T. J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: a guide to methods and applications (M. A. Innis, D. H. Gelfand, J. J. Sninsky & T. J. White, eds): 315-322. Academic Press, San Diego.
45. Zentmyer, G. A. (1988) Origin and distribution of four species of Phytophthora. Transactions of the British Mycological Society 91: 367-378.