A molecular phylogeny of phytophthora and related oomycetes

Fungal Genetics and Biology

Volumn 30, Issue 1, 2000, Pages 17-32

  Cooke, D E L ^a   Drenth, A ^b   Duncan, J M ^a   Wagels, G ^b   Brasier, C M ^c  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^b UNIVERSITY OF QUEENSLAND   (Australia)

^c FOREST RESEARCH   (United Kingdom)

Author keywords

Evolution; Internal transcribed spacers; ITS; Peronospora; Pythium; rDNA

Indexed keywords

RIBOSOME DNA; SPACER DNA;

AMINO ACID SEQUENCE; ARTICLE; GENE AMPLIFICATION; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; OOMYCETES; PHYLOGENY; PHYTOPHTHORA; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TAXONOMY;

ALBUGO; HALOPHYTOPHTHORA; OOMYCETES; PERONOSPORA; PERONOSPORA MEGAKARYA; PERONOSPORA PALMIVORA; PHYTOPHTHORA; PHYTOPHTHORA MEGAKARYA; PHYTOPHTHORA PALMIVORA; PYTHIUM; SAPROLEGNIALES;

EID: 0033850499     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1006/fgbi.2000.1202     Document Type: Article

References (83)

1. Detection and identification of Phytophthora fragariae Hickman by the polymerase chain reaction
2. Problems and prospects in Phytophthora research
3. Current questions in Phytophthora systematics: The role of the population approach
4. Oak tree mortality in Iberia
5. Evolutionary biology of Phytophthora: I. Genetic system, sexuality and the generation of variation
6. Fungal species in practice: Identifying species units in fungi
7. Origin of a new Phytophthora pathogen through interspecific hybridisation
8. Cultural characters, protein patterns and unusual mating behaviour of Phytophthora gonapodyides isolates from Britain and North America
9. Evolutionary biology of Phytophthora. Part II: Phylogeny, speciation, and population structure
10. Ribosomal RNA sequence divergence within the Pythiaceae
11. Fungal molecular-systematics
12. Pit canker of elm
13. The Kingdom Chromista: Origin and systematics
14. A revised six-kingdom system of life
15. Phylogenetic analysis of Phytophthora species based on the ITS1 and ITS2 sequences of ribosomal DNA
16. Molecular evidence supports Phytophthora quercina as a distinct species
17. An interim utilitarian (user-friendly) hierarchical-classification and characterization of the protists
18. Evolutionary relationships among Phytophthora species deduced from rDNA sequence analysis
19. Evolution of spore release mechanisms in the Saprolegniaceae (Oomyeetes): Evidence from a phylogenetic analysis of internal transcribed spacer sequences
20. Phytophthora undulata comb. nov.
21. Phylum Oomycota
22. The identity of the oomycete causing kikuyu yellows with a reclassification of the downy mildews
23. Molecular drive: A cohesive mode of species evolution
24. DNA fingerprinting of the potato late blight fungus, Phytophthora infestans
25. Population structure: Oomycetes
26. The sterol requirement of Phytophthora cactorum
27. Mating type loci segregate aberrantly in Phytophthora infestans but normally in Phytophthora parasitica: Implications for models of mating-type determination
28. A hidden Markov Model approach to variation among sites in rate of evolution
29. Molecular taxonomy of Phytophthora megasperma based on mitochondrial and nuclear DNA polymorphisms
30. Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications of fungal evolution
31. Restriction fragment length polymorphisms of the mitochondrial DNA of Phytophthora megasperma isolated from soybean, alfalfa and fruit trees
32. Towards a better understanding of the evolutionary history of species of the genus Phytophthora using isozymes, DNA RFLPs and ribosomal spacer sequences
33. The Fungi
34. Some major epidemics caused by Phytophthora
35. First record of Phytophthora inflata in the United Kingdom
36. Variation in the species of the Phytophthora megasperma complex
37. The taxonomic structure of Phytophthora megasperma: Evidence for emerging biological species groups
38. Species of the Phytophthora megasperma complex
39. Evidence for biased gene conversion in concerted evolution of ribosomal DNA
40. Phytophthora melonis and P. sinensis are synonymous with P. drechsleri
41. A comparison between Phytophthora cryptogea and P. drechsleri
42. Halophytophthora gen. nov., a new member of the family Pythiaceae
43. Phytophthora multivesiculata, a new species causing rot in Cymbidium
44. The origins of Phytophthora species attacking legumes in Australia
45. Persistent, systemic, asymptomatic infections of Albugo candida, an oomycete parasite, detected in three wild crucifer species
46. Phytophthora quercina sp. nov. causing root rot of European oak species
47. Phytophthora blight of pigeon pea in India
48. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
49. Phytophthora tentaculata sp. nov. und Phytophthora cinnamomi var. parvispora var. nov., zwei neue Pilz von Zierpflanzen in Deutschland
50. PCR-based detection of Phytophthora species in horticultural crops
51. Phylogeny of five fungus-like protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA
52. Identification of Phytophthora species
53. Peronospora sparsa on cultivated Rubus arcticus and its detection by PCR based on ITS sequences
54. Natural hybrids of Phytophthora nicotianae and Phytophthora cactorum demonstrated by isozyme analysis and random amplified polymorphic DNA
55. Pythium
56. Cytological studies of heterothallism and secondary homothallism in Bremia lactucae
57. Taxonomic structure of Phytophthora cryptogea and P. drechsleri based on isozyme and mitochondrial DNA analysis
58. Isozyme comparison within and among worldwide sources of three morphologically distinct species of Phytophthora
59. A revised systematics of twelve papillate Phytophthora species based on isozyme analysis
60. Evidence for distinct isozyme subgroups within Phytophthora citricola and close relationships with P. capsici and P. citrophthora
61. TREEVIEW: An application to display phylogenetic trees on personal computers
62. A new stem rot of arhar caused by Phytophthora
63. Reciprocal translocation heterozygosity in heterothallic species of Phytophthora and its significance
64. Cytological studies on Phytophthora nicotianae var parasitica in relation to mating type
65. Fungal chromosomes as observed by the light microscope
66. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
67. CLUSTAL W: Improving the sensitivity of multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
68. Taxonomy of the genus Phytophthora
69. Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the oomycetes
70. The evolution of stramenopiles and alveolates as derived by 'substitution rate calibration' of small ribosomal subunit RNA
71. Peronosporales
72. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
73. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
74. The ecological impact of Phytophthora cinnamomi in the Stirling Range National Park, Western Australia
75. Among-site rate variation and its impact on phylogenetic analyses
76. The world of Phytophthora