Transcriptome analysis of the response to chronic constant hypoxia in zebrafish hearts

Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology

Volumn 178, Issue 1, 2008, Pages 77-92

  Marques, Ines J ^a   Leito, Jelani T D ^b   Spaink, Herman P ^a   Testerink, Janwillem ^a,b   Jaspers, Richard T ^b   Witte, Frans ^a   Van Den Berg, Sjoerd ^a   Bagowski, Christoph P ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b VU UNIVERSITY AMSTERDAM   (Netherlands)

Author keywords

Gene expression; Heart; Hyperplasia; Hypoxia; Zebrafish

Indexed keywords

PHOSPHATIDYLINOSITOL 3 KINASE; PROTEIN KINASE B; SOMATOMEDIN B; SOMATOMEDIN BINDING PROTEIN 1; ZEBRAFISH PROTEIN;

ADAPTATION; ANIMAL; ANOXIA; ARTICLE; CHRONIC DISEASE; CICHLID; COMPARATIVE STUDY; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HEART MUSCLE; METABOLISM; METHODOLOGY; PATHOLOGY; PHOSPHORYLATION; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; TIME; ZEBRA FISH;

1-PHOSPHATIDYLINOSITOL 3-KINASE; ADAPTATION, PHYSIOLOGICAL; ANIMALS; ANOXIA; CHRONIC DISEASE; CICHLIDS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 1; INSULIN-LIKE GROWTH FACTOR II; MYOCARDIUM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOSPHORYLATION; POLYMERASE CHAIN REACTION; PROTO-ONCOGENE PROTEINS C-AKT; REPRODUCIBILITY OF RESULTS; TIME FACTORS; ZEBRAFISH; ZEBRAFISH PROTEINS;

CICHLIDAE; DANIO RERIO; HAPLOCHROMIS PICEATUS; MAMMALIA; TELEOSTEI;

EID: 38349041705     PISSN: 01741578     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00360-007-0201-4     Document Type: Article

References (42)

1. Androutsellis-Theotokis A, Leker RR, Soldner F, Hoeppner DJ, Ravin R, Poser SW, Rueger MA, Bae S-K, Kittappa R, McKay RDG (2006) Notch signalling regulates stem cell numbers in vitro and in vivo. Nature (advanced online publication)
2. Armstrong EJ, Bischoff J (2004) Heart valve development: endothelial cell signaling and differentiation. Circ Res 95:459-470
3. Beilharz EJ, Bassett NS, Sirimanne ES, Williams CE, Gluckman PD (1995) Insulin-like growth factor II is induced during wound repair following hypoxic-ischemic injury in the developing rat brain. Mol Brain Res 29:81-91
4. Beltrami AP, Urbanek K, Kajstura J, Yan SM, Finato N, Bussani R, Nadal-Ginard B, Silvestri F, Leri A, Beltrami CA, Anversa P (2001) Evidence that human cardiac myocytes divide after myocardial infarction. N Engl J Med 344:1750-1757
5. Bianchi S, Dotti MT, Federico A (2006) Physiology and pathology of notch signalling system. J Cell Physiol 207:300-308
6. DeBosch B, Treskov I, Lupu TS, Weinheimer C, Kovacs A, Courtois M, Muslin AJ (2006) Akt1 is required for physiological cardiac growth. Circulation 113:2097-2104
7. Deindl E, Kolar F, Neubauer E, Vogel S, Schaper W, Ostadal B (2003) Effect of intermittent high altitude hypoxia on gene expression in rat heart and lung. Physiological Res 52:47-57
8. Des Tombe AL, Van Beek-Harmsen BJ, Lee-De Groot MB, Van Der Laarse WJ (2002) Calibrated histochemistry applied to oxygen supply and demand in hypertrophied rat myocardium. Microsc Res Tech 58:412-420
9. Doran JP, Howie AJ, Townend JN, Bonser RS (1996) Detection of myocardial infarction by immunohistological staining for C9 on formalin fixed, paraffin wax embedded sections. J Clin Pathol 49:34-37
10. Fan C, Iacobas DA, Zhou D, Chen Q, Lai JK, Gavrialov O, Haddad GG (2005) Gene expression and phenotypic characterization of mouse heart after chronic constant or intermittent hypoxia. Physiol Genomics 22:292-307
11. Florini JR, Ewton DZ, Coolican SA (1996) Growth hormone and the insulin-like growth factor system in myogenesis. Endocr Rev 17:481-517
12. Gracey AY, Troll JV, Somero GN (2001) Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis. PNAS 98:1993-1998
13. Greenway SC, Storey KB (2000) Mitogen-activated protein kinases and anoxia tolerance in turtles. J Exp Zool 287:477-484
14. Kajimura S, Aida K, Duan C (2005a) From the Cover: Insulin-like growth factor-binding protein-1 (IGFBP-1) mediates hypoxia-induced embryonic growth and developmental retardation. PNAS 102:1240-1245
15. Kajimura S, Aida K, Duan C (2005b) Insulin-like growth factor-binding protein-1 (IGFBP-1) mediates hypoxia-induced embryonic growth and developmental retardation. Proc Natl Acad Sci USA 102:1240-1245
16. Kolar F, Ostadal B (2003) Molecular mechanisms of cardiac protection by adaptation to chronic hypoxia. Physiol Res 53:S3-S13
17. Lee SD, Chu CH, Huang EJ, Lu MC, Liu JY, Liu CJ, Hsu HH, Lin JA, Kuo WW, Huang CY (2006) Roles of insulin-like growth factor II in cardiomyoblast apoptosis and in hypertensive rat heart with abdominal aorta ligation. Am J Physiol Endocrinol Metab 291:E306-E314
18. Levy AP, Hochberg I, Jablonski K, Resnick HE, Lee ET, Best L, Howard BV (2002) Haptoglobin phenotype is an independent risk factor for cardiovascular disease in individuals with diabetes: the strong heart study. J Am Coll Cardiol 40:1984-1990
19. Meijer AH, Verbeek FJ, Salas-Vidal E, Corredor-Adamez M, Bussman J, van der Sar AM, Otto GW, Geisler R, Spaink HP (2005) Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection. Mol Immunol 42:1185-1203
20. Merx MW, Schafer C, Westenfeld R, Brandenburg V, Hidajat S, Weber C, Ketteler M, Jahnen-Dechent W (2005) Myocardial stiffness, cardiac remodeling, and diastolic dysfunction in calcification-prone fetuin-a-deficient mice. J Am Soc Nephrol 16:3357-3364
21. Nezelof C, Bouvier R, Dijoud F (2002) Multifocal myocardial necrosis: a distinctive cardiac lesion in cystic fibrosis, lipomatous pancreatic atrophy, and keshan disease. Fetal Pediatr Pathol 21:343-352
22. Ostadal B, Kolar F (2007) Cardiac adaptation to chronic high-altitude hypoxia: Beneficial and adverse effects. Respir Physiol Neurobiol (in press)
23. Pescador N, Cuevas Y, Naranjo S, Alcaide M, Villar D, Landazuri MO, Del Peso L (2005) Identification of a functional hypoxia-responsive element that regulates the expression of the egl nine homologue 3 (egln3/phd3) gene. Biochem J 390:189-197
24. Poss KD, Wilson LG, Keating MT (2002) Heart regeneration in zebrafish. Science 298:2188-2190
25. Powers SK, Kavazis AN, McClung JM (2007) Oxidative stress and disuse muscle atrophy. J Appl Physiol 102(6):2389-2397
26. Sabbah HN, Sharov VG, Goldstein S (2000a) Cell death, tissue hypoxia and the progression of heart failure. Heart Fail Rev 5:131-138
27. Semenza GL (1999) Regulation of mammalian O2 homeostasis by hypoxia-inducible factor 1. Annu Rev Cell Dev Biol 15:551-578
28. Semenza GL (2001) Hypoxia-inducible factor 1: oxygen homeostasis and disease pathophysiology. Trends Mol Med 7:345-350
29. Shi Y, Pritchard Jr KA, Holman P, Rafiee P, Griffith OW, Kalyanaraman B, Baker JE (2000) Chronic myocardial hypoxia increases nitric oxide synthase and decreases caveolin-3. Free Radic Biol Med 29:695-703
30. Shiose S, Hata Y, Noda Y, Sassa Y, Takeda A, Yoshikawa H, Fujisawa K, Kubota T, Ishibashi T (2004) Fibrinogen stimulates in vitro angiogenesis by choroidal endothelial cells via autocrine VEGF. Graefes Arch Clin Exp Ophthalmol 242:777-783
31. Simon KJ, Grueneberg DA, Gilman M (1997) Protein and DNA contact surfaces that mediate the selective action of the Phox1 homeodomain at the c-fos serum response element. Mol Cell Biol 17:6653-6662
32. Stecyk JAW, Stenslokken K-O, Farrell AP, Nilsson GE (2004) Maintained cardiac pumping in anoxic crucian carp. Science 306:77
33. Stewart CE, Rotwein P (1996) Growth, differentiation, and survival: multiple physiological functions for insulin-like growth factors. Physiol Rev 76:1005-1026
34. Tewari M YM, Ross B, Dean C, Giordano A, Rubin R (1997) AAC-11, a novel cDNA that inhibits apoptosis after growth factor withdrawal. Cancer Res 57:4063-4069
35. Ton C, Stamatiou D, Liew C-C (2003) Gene expression profile of zebrafish exposed to hypoxia during development. Physiol Genom 13:97-106
36. van Beek-Harmsen BJ, van der Laarse WJ (2005) Immunohistochemical determination of cytosolic cytochrome C concentration in cardiomyocytes. J Histochem Cytochem 53:803-807
37. van der Laarse WJ, des Tombe AL, van Beek-Harmsen BJ, Lee-de Groot MB, Jaspers RT (2005) Krogh's diffusion coefficient for oxygen in isolated Xenopus skeletal muscle fibers and rat myocardial trabeculae at maximum rates of oxygen consumption. J Appl Physiol 99:2173-2180
38. van der Meer DL, van den Thillart GE, Witte F, de Bakker MA, Besser J, Richardson MK, Spaink HP, Leito JT, Bagowski CP (2005) Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish. Am J Physiol Regul Integr Comp Physiol 289:R1512-R1519
39. van der Meer DL, Marques IJ, Leito JT, Besser J, Bakkers J, Schoonheere E, Bagowski CP (2006) Zebrafish cypher is important for somite formation and heart development. Dev Biol 299:356-372
40. Wang G-W, Zhou Z, Klein JB, Kang YJ (2001) Inhibition of hypoxia/reoxygenation-induced apoptosis in metallothionein-overexpressing cardiomyocytes. Am J Physiol Heart Circ Physiol 280:H2292-H2299
41. Webster KA, Discher DJ, Bishopric NH (1993) Induction and nuclear accumulation of fos and jun proto-oncogenes in hypoxic cardiac myocytes. J Biol Chem 268:16852-16858
42. Xu Q, Reed JC (1998) Bax inhibitor-1, a mammalian apoptosis suppressor identified by functional screening in yeast. Mol Cell 1:337-346