Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2

Journal of Biological Chemistry

Volumn 282, Issue 52, 2007, Pages 37624-37631

  Bianchetti, Christopher M ^a   Yi, Li ^b   Ragsdale, Stephen W ^b   Phillips Jr , George N ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CARBON; CRYSTAL STRUCTURE; DEGRADATION; ENZYME ACTIVITY;

HEME OXYGENASE (HO); PROXIMAL HELIX;

PIGMENTS;

ARGININE; GLYCINE; HEME; HEME OXYGENASE; HEME OXYGENASE 1; HEME OXYGENASE 2; HISTIDINE; LYSINE; TYROSINE;

ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CRYSTAL STRUCTURE; ENZYME STRUCTURE; HUMAN; OXIDATION; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; STEREOCHEMISTRY;

AMINO ACID SEQUENCE; ANIMALS; ARGININE; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; HEME OXYGENASE (DECYCLIZING); HISTIDINE; HUMANS; HYDROGEN BONDING; LYSINE; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; OXYGEN; SEQUENCE HOMOLOGY, AMINO ACID; TYROSINE;

EID: 38049144525     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M707396200     Document Type: Article

References (63)

1. Maines, M. D. (2005) Antioxid. Redox Signaling 7, 1761-1766
2. Farombi, E. O., and Surh, Y. J. (2006) J. Biochem. Mol. Biol. 39, 479-491
3. Grosser, N., Oberle, S., Berndt, G., Erdmann, K., Hemmerle, A., and Schroder, H. (2004) Biochem. Biophys. Res. Commun. 314, 351-355
4. Ragsdale, S. W. (2006) Chem. Rev. 106, 3317-3337
5. Kim, H. P., Ryter, S. W., and Choi, A. M. (2006) Annu. Rev. Pharmacol. Toxicol. 46, 411-449
6. Ryter, S. W., Morse, D., and Choi, A. M. (2004) Sci. STKE 2004, RE6
7. Moore, B. A., Overhaus, M., Whitcomb, J., Ifedigbo, E., Choi, A. M., Otterbein, L. E., and Bauer, A. J. (2005) Crit. Care Med. 33, 1317-1326
8. Otterbein, L. E., Soares, M. P., Yamashita, K., and Bach, F. H. (2003) Trends Immunol. 24, 449-455
9. Yachie, A., Niida, Y., Wada, T., Igarashi, N., Kaneda, H., Toma, T., Ohta, K., Kasahara, Y., and Koizumi, S. (1999) J. Clin. Investig. 103, 129-135
10. Baranano, D. E., Rao, M., Ferris, C. D., and Snyder, S. H. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16093-16098
11. Fondevila, C., Shen, X. D., Tsuchiyashi, S., Yamashita, K., Csizmadia, E., Lassman, C., Busuttil, R. W., Kupiec-Weglinski, J. W., and Bach, F. H. (2004) Hepatology (Baltimore) 40, 1333-1341
12. Maines, M. D., and Gibbs, P. E. M. (2005) Biochem. Biophys. Res. Commun. 338, 568-577
13. Terry, M. J., Linley, P. J., and Kohchi, T. (2002) Biochem. Soc. Transact. 30, 604-609
14. Watanabe, T., Kikuchi, M., Hatakeyama, D., Shiga, T., Yamamoto, T., Aonuma, H., Takahata, M., Suzuki, N., and Ito, E. (2007) Dev. Neurobiol. 67, 456-473
15. McCoubrey, W. K., Huang, T. J., and Maines, M. D. (1997) Eur. J. Biochem. 247, 725-732
16. Davis, S. J., Bhoo, S. H., Durski, A. M., Walker, J. M., and Vierstra, R. D. (2001) Plant Physiol. 126, 656-669
17. Maines, M. D. (1997) Annu. Rev. Pharmacol. Toxicol. 37, 517-554
18. Alam, J., Shibahara, S., and Smith, A. (1989) J. Biol. Chem. 264, 6371-6375
19. Keyse, S. M., Applegate, L. A., Tromvoukis, Y., and Tyrrell, R. M. (1990) Mol. Cell. Biol. 10, 4967-4969
20. Lin, J. H., Villalon, P., Martasek, P., and Abraham, N. G. (1990) Eur. J. Biochem. 192, 577-582
21. Rizzardini, M., Terao, M., Falciani, F., and Cantoni, L. (1993) Biochem. J. 290, 343-347
22. Wu, W. T., Chi, K. H., Ho, F. M., Tsao, W. C., and Lin, W. W. (2004) Biochem. J. 379, 587-593
23. Maines, M. D., Eke, B. C., and Zhao, X. (1996) Brain Res. 722, 83-94
24. Pimstone, N. R., Engel, P., Tenhunen, R., Seitz, P. T., Marver, H. S., and Schmid, R. (1971) J. Clin. Investig. 50, 2042-2050
25. Tenhunen, R., Marver, H. S., and Schmid, R. (1970) J. Lab. Clin. Med. 75, 410-421
26. Trakshel, G. M., Kutty, R. K., and Maines, M. D. (1986) J. Biol. Chem. 261, 11131-11137
27. Lin, Q., Weis, S., Yang, G., Weng, Y. H., Helston, R., Rish, K., Smith, A., Bordner, J., Polte, T., Gaunitz, F., and Dennery, P. A. (2007) J. Biol. Chem. 282, 20621-20633
28. Yi, L., and Ragsdale, S. W. (2007) J. Biol. Chem. 282, 21056-21067
29. Wilks, A., and Ortiz de Montellano, P. R. (1993) J. Biol. Chem. 268, 22357-22362
30. Schuller, D. J., Wilks, A., Ortiz de Montellano, P. R., and Poulos, T. L. (1999) Nat. Struct. Biol. 6, 860-867
31. Lad, L., Wang, J., Li, H., Friedman, J., Bhaskar, B., Ortiz de Montellano, P. R., and Poulos, T. L. (2003) J. Mol. Biol. 330, 527-538
32. Sugishima, M., Sakamoto, H., Higashimoto, Y., Noguchi, M., and Fukuyama, K. (2003) J. Biol. Chem. 278, 32352-32358
33. Sugishima, M., Sakamoto, H., Noguchi, M., and Fukuyama, K. (2003) Biochemistry 42, 9898-9905
34. Unno, M., Matsui, T., and Ikeda-Saito, M. (2007) Nat. Prod. Rep. 24, 553-570
35. Otwinowski, Z. M., Wladek (1997) Macromol. Crystallogr. Part A, 307-326
36. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
37. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 5, 458-463
38. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
39. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
40. Laskowski, R. A., Macarthur, M. W., Moss, D. S., and Thornton. J. M. (1993) J. Appl. Crystallogr. 26, 283-291
41. Lovell, S. C., Davis, I. W., Arendall, W. B., III, de Bakker, P. I. W., Word, J. M., Prisant, M. G., Richardson, J. S., and Richardson, D. C. (2003) Prot. Struct. Funct. Genet. 50, 437-450
42. Rodriguez, J. C., Zeng, Y., Wilks, A., and Rivera, M. (2007) J. Am. Chem. Soc. 129, 11730-11742
43. Levin, E. J., Kondrashov, D. A., Wesenberg, G. E., and Phillips, G. N., Jr. (2007) Structure 15, 1040-1052
44. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. 54, 905-921
45. Sugishima, M., Omata, Y., Kakuta, Y., Sakamoto, H., Noguchi, M., and Fukuyama, K. (2000) FEBS Lett. 471, 61-66
46. Schuller, D. J., Zhu, W., Stojiljkovic, I., Wilks, A., and Poulos, T. L. (2001) Biochemistry 40, 11552-11558
47. Hirotsu, S., Chu, G. C., Unno, M., Lee, D. S., Yoshida, T., Park, S. Y., Shiro, Y., and Ikeda-Saito, M. (2004) J. Biol. Chem. 279, 11937-11947
48. Friedman, J., Lad, L., Li, H., Wilks, A., and Poulos, T. L. (2004) Biochemistry 43, 5239-5245
49. Sugishima, M., Hagiwara, Y., Zhang, X., Yoshida, T., Migita, C. T., and Fukuyama, K. (2005) Biochemistry 44, 4257-4266
50. Sugishima, M., Migita, C. T., Zhang, X., Yoshida, T., and Fukuyama, K. (2004) Eur. J. Biochem. 271, 4517-4525
51. Lad, L., Schuller, D. J., Shimizu, H., Friedman, J., Li, H., Ortiz de Montellano, P. R., and Poulos, T. L. (2003) J. Biol. Chem. 278, 7834-7843
52. Lad, L., Friedman, J., Li, H., Bhaskar, B., Ortiz de Montellano, P. R., and Poulos, T. L. (2004) Biochemistry 43, 3793-3801
53. Lad, L., Ortiz de Montellano, P. R., and Poulos, T. L. (2004) J. Inorg. Biochem. 98, 1686-1695
54. Sugishima, M., Sakamoto, H., Kakuta, Y., Omata, Y., Hayashi, S., Noguchi, M., and Fukuyama, K. (2002) Biochemistry 41, 7293-7300
55. Fujii, H., Zhang, X., Tomita, T., Ikeda-Saito, M., and Yoshida, T. (2001) J. Am. Chem. Soc. 123, 6475-6484
56. Lightning, L. K., Huang, H., Moenne-Loccoz, P., Loehr, T. M., Schuller, D. J., Poulos, T. L., and de Montellano, P. R. (2001) J. Biol. Chem. 276, 10612-10619
57. De Montellano, P. R. O. (1998) Acc. Chem. Res. 31, 543-549
58. Sano, S., Sano, T., Morishima, I., Shiro, Y., and Maeda, Y. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 531-535
59. Wang, J., Evans, J. P., Ogura, H., La Mar, G. N., and Ortiz de Montellano, P. R. (2006) Biochemistry 45, 61-73
60. Deshmukh, R., Zeng, Y., Furci, L. M., Huang, H. W., Morgan, B. N., Sander, S., Alontaga, A. Y., Bunce, R. A., Moenne-Loccoz, P., Rivera, M., and Wilks, A. (2005) Biochemistry 44, 13713-13723
61. Caignan, G. A., Deshmukh, R., Wilks, A., Zeng, Y., Huang, H. W., Moenne-Loccoz, P., Bunce, R. A., Eastman, M. A., and Rivera, M. (2002) J. Am. Chem. Soc. 124, 14879-14892
62. Wang, J., Lad, L., Poulos, T. L., and Ortiz de Montellano, P. R. (2005) J. Biol. Chem. 280, 2797-2806
63. Ratliff, M., Zhu, W., Deshmukh, R., Wilks, A., and Stojiljkovic, I. (2001) J. Bacteriol. 183, 6394-6403