-
1
-
-
0033582763
-
Single molecule force spectroscopy of spectrin repeats: Low unfolding forces in helix bundles
-
Rief, M., J. Pascual, M. Saraste, and H. G. Gaub. 1999. Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles. J. Mol. Biol. 286:553-561.
-
(1999)
J. Mol. Biol
, vol.286
, pp. 553-561
-
-
Rief, M.1
Pascual, J.2
Saraste, M.3
Gaub, H.G.4
-
2
-
-
33644849450
-
Nanospring behavior of ankyrin repeats
-
Lee, G., K. Abdi, Y. Jiang, P. Michaely, V. Bennett, and P. E. Marszalek. 2006. Nanospring behavior of ankyrin repeats. Nature. 440:246-249.
-
(2006)
Nature
, vol.440
, pp. 246-249
-
-
Lee, G.1
Abdi, K.2
Jiang, Y.3
Michaely, P.4
Bennett, V.5
Marszalek, P.E.6
-
3
-
-
0037194788
-
Reverse engineering of the giant muscle protein titin
-
Li, H., W. A. Linke, A. F. Oberhauser, M. Carrion-Vazquez, J. G. Kerkviliet, H. Lu, P. E. Marszalek, and J. M. Fernandez. 2002. Reverse engineering of the giant muscle protein titin. Nature. 418:998-1002.
-
(2002)
Nature
, vol.418
, pp. 998-1002
-
-
Li, H.1
Linke, W.A.2
Oberhauser, A.F.3
Carrion-Vazquez, M.4
Kerkviliet, J.G.5
Lu, H.6
Marszalek, P.E.7
Fernandez, J.M.8
-
4
-
-
0042508740
-
The mechanical stability of ubiquitin is linkage dependent
-
Carrion-Vazquez, M., H. Li, H. Lu, P. E. Marszalek, A. F. Oberhauser, and J. M. Fernandez. 2003. The mechanical stability of ubiquitin is linkage dependent. Nat. Struct. Biol. 10:738-743.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 738-743
-
-
Carrion-Vazquez, M.1
Li, H.2
Lu, H.3
Marszalek, P.E.4
Oberhauser, A.F.5
Fernandez, J.M.6
-
5
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
6
-
-
0030777303
-
CATH - a hierarchical classification of protein domain structures
-
Orengo, C. A., A. D. Micchie, S. Jones, D. T. Jones, M. B. Swindels, and J. M. Thornton. 1997. CATH - a hierarchical classification of protein domain structures. Structure. 5:1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Micchie, A.D.2
Jones, S.3
Jones, D.T.4
Swindels, M.B.5
Thornton, J.M.6
-
7
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Lu, H., B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten. 1998. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys. J. 75:662-671.
-
(1998)
Biophys. J
, vol.75
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
8
-
-
0019571422
-
Noninteracting local-structure model of folding and unfolding transition in globular proteins. II. Application to two-dimensional lattice proteins
-
Abe, H., and N. Gō. 1981. Noninteracting local-structure model of folding and unfolding transition in globular proteins. II. Application to two-dimensional lattice proteins. Biopolymers. 20:1013-1031.
-
(1981)
Biopolymers
, vol.20
, pp. 1013-1031
-
-
Abe, H.1
Gō, N.2
-
9
-
-
0030624384
-
Protein folding kinetics: Time scales, pathways and energy landscapes in terms of sequence-dependent properties
-
Veitshans, T., D. Klimov, and D. Thirumalai. 1997. Protein folding kinetics: time scales, pathways and energy landscapes in terms of sequence-dependent properties. Folding Des. 2:1-22.
-
(1997)
Folding Des
, vol.2
, pp. 1-22
-
-
Veitshans, T.1
Klimov, D.2
Thirumalai, D.3
-
10
-
-
0037216990
-
Universality classes in folding times of proteins
-
Cieplak, M., and T. X. Hoang. 2003. Universality classes in folding times of proteins. Biophys. J. 84:475-488.
-
(2003)
Biophys. J
, vol.84
, pp. 475-488
-
-
Cieplak, M.1
Hoang, T.X.2
-
11
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and "on-route" intermediates for protein folding? An investigation for small globular proteins
-
Clementi, C., H. Nymeyer, and J. N. Onuchic. 2000. Topological and energetic factors: what determines the structural details of the transition state ensemble and "on-route" intermediates for protein folding? An investigation for small globular proteins. J. Mol. Biol. 298:937-953.
-
(2000)
J. Mol. Biol
, vol.298
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
12
-
-
0036785556
-
The origins of asymmetry in the folding transition states of protein L and protein G
-
Karanicolas, J., and C. L. Brooks III. 2002. The origins of asymmetry in the folding transition states of protein L and protein G. Protein Sci. 11:2351-2361.
-
(2002)
Protein Sci
, vol.11
, pp. 2351-2361
-
-
Karanicolas, J.1
Brooks III, C.L.2
-
13
-
-
3042806394
-
Thermal effects in stretching of Gō-like models of titin and secondary structures
-
Cieplak, M., T. X. Hoang, and M. O. Robbins. 2004. Thermal effects in stretching of Gō-like models of titin and secondary structures. Proteins Struct. Funct. Biol. 56:285-297.
-
(2004)
Proteins Struct. Funct. Biol
, vol.56
, pp. 285-297
-
-
Cieplak, M.1
Hoang, T.X.2
Robbins, M.O.3
-
14
-
-
0033516705
-
The packing density in proteins: Standard radii and volumes
-
Tsai, J., R. Taylor, C. Chothia, and M. Gerstein. 1999. The packing density in proteins: standard radii and volumes. J. Mol. Biol. 290:253-266.
-
(1999)
J. Mol. Biol
, vol.290
, pp. 253-266
-
-
Tsai, J.1
Taylor, R.2
Chothia, C.3
Gerstein, M.4
-
15
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev, V., A. Sorokine, J. Prilusky, E. E. Abola, and M. Edelman. 1999. Automated analysis of interatomic contacts in proteins. Bioinformatics. 15:327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
17
-
-
22944478656
-
Mechanical properties of the domains of titin in a Gō-like model
-
Cieplak, M., A. Pastore, and T. X. Hoang. 2005. Mechanical properties of the domains of titin in a Gō-like model. J. Chem. Phys. 122:054906.
-
(2005)
J. Chem. Phys
, vol.122
, pp. 054906
-
-
Cieplak, M.1
Pastore, A.2
Hoang, T.X.3
-
18
-
-
33750453758
-
Stretching of proteins in a uniform flow
-
Szymczak, P., and M. Cieplak. 2006. Stretching of proteins in a uniform flow. J. Chem. Phys. 125:164903.
-
(2006)
J. Chem. Phys
, vol.125
, pp. 164903
-
-
Szymczak, P.1
Cieplak, M.2
-
19
-
-
0842313009
-
A mechanical unfolding intermediate in an actin-cross-linking protein
-
Schwaiger, I., A. Kardinal, M. Schleicher, A. A. Noegel, and M. Rief. 2004. A mechanical unfolding intermediate in an actin-cross-linking protein. Nat. Struct. Mol. Biol. 11:81-85.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 81-85
-
-
Schwaiger, I.1
Kardinal, A.2
Schleicher, M.3
Noegel, A.A.4
Rief, M.5
-
20
-
-
21444445531
-
The folding pathway of a fast-folding immunoglobulin domain revealed by single-molecule mechanical experiment
-
6:46-51
-
Schweiger, I., M. Schleicher, A. E. Noegel, and M. Rief. 2005. The folding pathway of a fast-folding immunoglobulin domain revealed by single-molecule mechanical experiment. EMBO Rep. 6:46-51.
-
(2005)
EMBO Rep
-
-
Schweiger, I.1
Schleicher, M.2
Noegel, A.E.3
Rief, M.4
-
21
-
-
0042508741
-
Pulling geometry defines mechanical resistance of β-sheet protein
-
Brockwell, D. J., E. Paci, R. C. Zinober, G. S. Beddard, P. D. Olmsted, D. A. Smith, R. N. Perham, and S. E. Radford. 2003. Pulling geometry defines mechanical resistance of β-sheet protein. Nat. Struct. Biol. 10:731-737.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 731-737
-
-
Brockwell, D.J.1
Paci, E.2
Zinober, R.C.3
Beddard, G.S.4
Olmsted, P.D.5
Smith, D.A.6
Perham, R.N.7
Radford, S.E.8
-
22
-
-
33747095897
-
Pulling single bacteriorhodopsin out of a membrane: Comparison of simulation and experiment
-
Cieplak, M., S. Filipek, H. Janovjak, and K. A. Krzysko. 2006. Pulling single bacteriorhodopsin out of a membrane: comparison of simulation and experiment. Biochim. Biophys. Acta. 1758:537-544.
-
(2006)
Biochim. Biophys. Acta
, vol.1758
, pp. 537-544
-
-
Cieplak, M.1
Filipek, S.2
Janovjak, H.3
Krzysko, K.A.4
-
23
-
-
0141753133
-
Unfolding pathways of native bacteriorhodopsin depend on temperature
-
Janovjak, H., M. Kessler, D. Oesterhelt, H. G. Gaub, and D. J. Muller. 2003. Unfolding pathways of native bacteriorhodopsin depend on temperature. EMBO J. 22:5220-5229.
-
(2003)
EMBO J
, vol.22
, pp. 5220-5229
-
-
Janovjak, H.1
Kessler, M.2
Oesterhelt, D.3
Gaub, H.G.4
Muller, D.J.5
-
24
-
-
33645770767
-
Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy
-
Li, L. W., S. Wetzel, A. Pluckthun, and J. M. Fernandez. 2006. Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy. Biophys. J. 90:L30-L32.
-
(2006)
Biophys. J
, vol.90
-
-
Li, L.W.1
Wetzel, S.2
Pluckthun, A.3
Fernandez, J.M.4
-
25
-
-
0034533671
-
Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering
-
Carrion-Vazquez, M., A. F. Oberhauser, T. E. Fisher, P. E. Marszalek, H. Li, and J. M. Fernandez. 2000. Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. Prog. Biophys. Mol. Biol. 74:63-91.
-
(2000)
Prog. Biophys. Mol. Biol
, vol.74
, pp. 63-91
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fisher, T.E.3
Marszalek, P.E.4
Li, H.5
Fernandez, J.M.6
-
26
-
-
33646142064
-
Mechanical resistance of proteins explained using simple molecular models
-
West, D. K., D. J. Brockwell, P. D. Olmsted, S. E. Radford, and E. Paci. 2006. Mechanical resistance of proteins explained using simple molecular models. Biophys. J. 90:287-297.
-
(2006)
Biophys. J
, vol.90
, pp. 287-297
-
-
West, D.K.1
Brockwell, D.J.2
Olmsted, P.D.3
Radford, S.E.4
Paci, E.5
-
27
-
-
4544284283
-
Simulation of the mechanical unfolding of ubiquitin: Probing different unfolding reaction coordinates by changing the pulling geometry
-
Li, P. C., and D. E. Makarov. 2004. Simulation of the mechanical unfolding of ubiquitin: probing different unfolding reaction coordinates by changing the pulling geometry. J. Chem. Phys. 121:4826-4832.
-
(2004)
J. Chem. Phys
, vol.121
, pp. 4826-4832
-
-
Li, P.C.1
Makarov, D.E.2
-
28
-
-
0035852740
-
Force unfolding modulated by disulphide bonds in the Ig domains of a cell adhesion molecule
-
Carl, P., C. H. Kwok, G. Manderson, D. W. Speicher, and D. E. Discher. 2001. Force unfolding modulated by disulphide bonds in the Ig domains of a cell adhesion molecule. Proc. Natl. Acad. Sci. USA. 98:1565-1570.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1565-1570
-
-
Carl, P.1
Kwok, C.H.2
Manderson, G.3
Speicher, D.W.4
Discher, D.E.5
-
29
-
-
0034071761
-
Stretching of single collapsed DNA molecules
-
Baumann, C. G., V. A. Bloomfield, S. B. Smith, C. Bustamante, M. D. Wang, and S. M. Block. 2000. Stretching of single collapsed DNA molecules. Biophys. J. 78:1965-1978.
-
(2000)
Biophys. J
, vol.78
, pp. 1965-1978
-
-
Baumann, C.G.1
Bloomfield, V.A.2
Smith, S.B.3
Bustamante, C.4
Wang, M.D.5
Block, S.M.6
-
30
-
-
33644849450
-
Nanospring behavior of ankyrin repeats
-
Lee, G., K. Abdi, Y. Jiang, P. Michaely, V. Bennett, and P. E. Marszalek. 2006. Nanospring behavior of ankyrin repeats. Nature. 440:246-249.
-
(2006)
Nature
, vol.440
, pp. 246-249
-
-
Lee, G.1
Abdi, K.2
Jiang, Y.3
Michaely, P.4
Bennett, V.5
Marszalek, P.E.6
-
31
-
-
0034612346
-
Atomic force microscopy reveals the mechanical design of a modular protein
-
Li, H., A. F. Oberhauser, S. B. Fowler, J. Clarke, and J. M. Fernandez. 2000. Atomic force microscopy reveals the mechanical design of a modular protein. Proc. Natl. Acad. Sci. USA. 97:6527-6531.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6527-6531
-
-
Li, H.1
Oberhauser, A.F.2
Fowler, S.B.3
Clarke, J.4
Fernandez, J.M.5
-
32
-
-
10044290957
-
Reversible mechanical unfolding of single ubiquitin molecules
-
Chyan, C.-L., F.-C. Lin, H. Peng, J.-M. Yuan, C.-H. Chang, S.-H. Lin, and G. Yang. 2004. Reversible mechanical unfolding of single ubiquitin molecules. Biophys. J. 87:3995-4006.
-
(2004)
Biophys. J
, vol.87
, pp. 3995-4006
-
-
Chyan, C.-L.1
Lin, F.-C.2
Peng, H.3
Yuan, J.-M.4
Chang, C.-H.5
Lin, S.-H.6
Yang, G.7
-
33
-
-
18744374455
-
Different molecular mechanics displayed by titin's constitutively and differentially expressed tandem Ig segments
-
Watanabe, K., C. Muhle-Goll, M. S. Z. Kellermayer, S. Labeit, and H. L. Granzier. 2002. Different molecular mechanics displayed by titin's constitutively and differentially expressed tandem Ig segments. Struct. Biol. J. 137:248-258.
-
(2002)
Struct. Biol. J
, vol.137
, pp. 248-258
-
-
Watanabe, K.1
Muhle-Goll, C.2
Kellermayer, M.S.Z.3
Labeit, S.4
Granzier, H.L.5
-
34
-
-
0037192845
-
Molecular mechanics of cardiac titins PEVK and N2B spring elements
-
Watanabe, K., P. Nair, D. Labeit, M. S. Z. Kellermayer, M. Greaser, S. Labeit, and H. L. Granzier. 2002. Molecular mechanics of cardiac titins PEVK and N2B spring elements. J. Biol. Chem. 277:11549-11558.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 11549-11558
-
-
Watanabe, K.1
Nair, P.2
Labeit, D.3
Kellermayer, M.S.Z.4
Greaser, M.5
Labeit, S.6
Granzier, H.L.7
-
35
-
-
23244441268
-
Mechanically unfolding small topologically simple protein L
-
Brockwell, D. J., S. Godfrey, S. Beddard, E. Paci, D. K. West, P. D. Olmsted, D. Alastair Smith, and S. E. Radford. 2005. Mechanically unfolding small topologically simple protein L. Biophys. J. 89:506-519.
-
(2005)
Biophys. J
, vol.89
, pp. 506-519
-
-
Brockwell, D.J.1
Godfrey, S.2
Beddard, S.3
Paci, E.4
West, D.K.5
Olmsted, P.D.6
Alastair Smith, D.7
Radford, S.E.8
-
36
-
-
0026490256
-
Structure of a fibronectin type III domain from tenascin phased by MAD analysis of the selenomethionyl protein
-
Leahy, D. J., W. A. Hendrickson, I. Aukhil, and H. P. Erickson. 1992. Structure of a fibronectin type III domain from tenascin phased by MAD analysis of the selenomethionyl protein. Science. 258:987-991.
-
(1992)
Science
, vol.258
, pp. 987-991
-
-
Leahy, D.J.1
Hendrickson, W.A.2
Aukhil, I.3
Erickson, H.P.4
-
37
-
-
0036305982
-
The mechanical hierarchies of fibronectin observed with single-molecule AFM
-
Oberhauser, A. F., C. Badilla-Fernandez, M. Carrion-Vazquez, and J. M. Fernandez. 2002. The mechanical hierarchies of fibronectin observed with single-molecule AFM. J. Mol. Biol. 31:433-447.
-
(2002)
J. Mol. Biol
, vol.31
, pp. 433-447
-
-
Oberhauser, A.F.1
Badilla-Fernandez, C.2
Carrion-Vazquez, M.3
Fernandez, J.M.4
-
38
-
-
0034533671
-
Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering
-
Carrion-Vazquez, M., A. F. Oberhauser, T. E. Fisher, P. E. Marszalek, H. Li, and J. M. Fernandez. 2000. Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. Prog. Biophys. Mol. Biol. 74:63-91.
-
(2000)
Prog. Biophys. Mol. Biol
, vol.74
, pp. 63-91
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fisher, T.E.3
Marszalek, P.E.4
Li, H.5
Fernandez, J.M.6
-
39
-
-
10044247452
-
Mechanical unfolding intermediates observed by single-molecule force spectroscopy in fibronectin type III module
-
Li, L., H. Han-Li Huang, C. L. Badilla, and J. M. Fernandez. 2005. Mechanical unfolding intermediates observed by single-molecule force spectroscopy in fibronectin type III module. J. Mol. Biol. 345:817-826.
-
(2005)
J. Mol. Biol
, vol.345
, pp. 817-826
-
-
Li, L.1
Han-Li Huang, H.2
Badilla, C.L.3
Fernandez, J.M.4
-
40
-
-
0034804341
-
Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation
-
Best, R. B., B. Li, A. Steward, V. Daggett, and J. Clarke. 2001. Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation. Biophys. J. 81:2344-2356.
-
(2001)
Biophys. J
, vol.81
, pp. 2344-2356
-
-
Best, R.B.1
Li, B.2
Steward, A.3
Daggett, V.4
Clarke, J.5
-
41
-
-
0034602693
-
Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme
-
Yang, G., C. Cecconi, W. A. Baase, I. R. Vetter, W. A. Breyer, J. A. Haack, B. W. Matthews, F. W. Dahlquist, and C. Bustamante. 2000. Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme. Proc. Natl. Acad. Sci. USA. 97:139-144.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 139-144
-
-
Yang, G.1
Cecconi, C.2
Baase, W.A.3
Vetter, I.R.4
Breyer, W.A.5
Haack, J.A.6
Matthews, B.W.7
Dahlquist, F.W.8
Bustamante, C.9
-
42
-
-
0034617430
-
States and transition during unfolding of a single spectrin repeat
-
Lenne, P. F., A. J. Raae, S. M. Altmann, M. Saraste, and J. K. H. Horber. 2000. States and transition during unfolding of a single spectrin repeat. FEBS Lett. 476:124-128.
-
(2000)
FEBS Lett
, vol.476
, pp. 124-128
-
-
Lenne, P.F.1
Raae, A.J.2
Altmann, S.M.3
Saraste, M.4
Horber, J.K.H.5
-
43
-
-
27644473726
-
Temperature softening of a protein in single-molecule experiments
-
Schlierf, M., and M. Rief. 2005. Temperature softening of a protein in single-molecule experiments. J. Mol. Biol. 354:497-503.
-
(2005)
J. Mol. Biol
, vol.354
, pp. 497-503
-
-
Schlierf, M.1
Rief, M.2
-
44
-
-
33645767959
-
Single-molecule unfolding force distribution reveals a funnel-shape energy landscape
-
Schlierf, M., and M. Rief. 2006. Single-molecule unfolding force distribution reveals a funnel-shape energy landscape. Biophys. J. 90:L33-L35.
-
(2006)
Biophys. J
, vol.90
-
-
Schlierf, M.1
Rief, M.2
-
45
-
-
0037216898
-
Cooperativity in force unfolding of tandem spectrin repeats
-
Law, R., P. Carl, S. Harper, P. Dalhaimer, D. W. Speicher, and D. E. Discher. 2003. Cooperativity in force unfolding of tandem spectrin repeats. Biophys. J. 84:533-544.
-
(2003)
Biophys. J
, vol.84
, pp. 533-544
-
-
Law, R.1
Carl, P.2
Harper, S.3
Dalhaimer, P.4
Speicher, D.W.5
Discher, D.E.6
-
46
-
-
1942501650
-
Influence of lateral association on forced unfolding of antiparallel spectrin heterodimers
-
Law, R., P. Carl, S. Harper, D. W. Speicher, and D. E. Discher. 2004. Influence of lateral association on forced unfolding of antiparallel spectrin heterodimers. J. Biol. Chem. 279:16410-16416.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 16410-16416
-
-
Law, R.1
Carl, P.2
Harper, S.3
Speicher, D.W.4
Discher, D.E.5
-
47
-
-
25444512161
-
Direct observation of the three-state folding of a single protein molecule
-
Cecconi, C., E. A. Shank, C. Bustamante, and S. Marqusee. 2005. Direct observation of the three-state folding of a single protein molecule. Science. 309:2057-2060.
-
(2005)
Science
, vol.309
, pp. 2057-2060
-
-
Cecconi, C.1
Shank, E.A.2
Bustamante, C.3
Marqusee, S.4
|