-
1
-
-
0018101150
-
Models of the specific adhesion of cells to cells
-
Bell, G. I. 1978. Models of the specific adhesion of cells to cells. Science. 200:618-627.
-
(1978)
Science
, vol.200
, pp. 618-627
-
-
Bell, G.I.1
-
2
-
-
0034804341
-
Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation
-
Best, R. B., B. Li, A. Steward, V. Daggett, and J. Clarke. 2001. Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation. Biophys. J. 81:2344-2356.
-
(2001)
Biophys. J.
, vol.81
, pp. 2344-2356
-
-
Best, R.B.1
Li, B.2
Steward, A.3
Daggett, V.4
Clarke, J.5
-
3
-
-
0026530383
-
Quantitative analysis of protein far UV circular dichroism spectra by neural networks
-
Bohm, G., R. Muhr, and R. Jaenicke. 1992. Quantitative analysis of protein far UV circular dichroism spectra by neural networks. Protein Eng. 5:191-195.
-
(1992)
Protein Eng.
, vol.5
, pp. 191-195
-
-
Bohm, G.1
Muhr, R.2
Jaenicke, R.3
-
4
-
-
1442307120
-
Much ado about enzyme mechanisms
-
Borman, S. 2004. Much ado about enzyme mechanisms. Chem. Eng. News. 82:35-39.
-
(2004)
Chem. Eng. News
, vol.82
, pp. 35-39
-
-
Borman, S.1
-
5
-
-
0028071373
-
Entropic elasticity of lambda-phage DNA
-
Bustamante, C., J. F. Marko, E. D. Siggia, and S. Smith. 1994. Entropic elasticity of lambda-phage DNA. Science 265:1599-1601.
-
(1994)
Science
, vol.265
, pp. 1599-1601
-
-
Bustamante, C.1
Marko, J.F.2
Siggia, E.D.3
Smith, S.4
-
6
-
-
0042508740
-
The mechanical stability of ubiquitin is linkage dependent
-
Carrion-Vazquez, M., H. Li, H. Lu, P. E. Marszalek, A. F. Oberhauser, and J. M. Fernandez. 2003. The mechanical stability of ubiquitin is linkage dependent. Nat. Struct. Biol. 10:738-743.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 738-743
-
-
Carrion-Vazquez, M.1
Li, H.2
Lu, H.3
Marszalek, P.E.4
Oberhauser, A.F.5
Fernandez, J.M.6
-
7
-
-
0034533671
-
Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering
-
Carrion-Vazquez, M., A. F. Oberhauser, T. E. Fisher, P. E. Marszalek, H. Li, and J. M. Fernandez. 2000. Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. Prog. Biophys. Mol. Bio. 74:63-91.
-
(2000)
Prog. Biophys. Mol. Bio.
, vol.74
, pp. 63-91
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fisher, T.E.3
Marszalek, P.E.4
Li, H.5
Fernandez, J.M.6
-
8
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein: A comparison
-
Carrion-Vazquez, M., A. F. Oberhauser, S. B. Fowler, P. E. Marszalek, S. E. Broedel, J. Clarke, and J. M. Fernandez. 1999. Mechanical and chemical unfolding of a single protein: a comparison. Proc. Natl. Acad. Sci. USA. 96:3694-3699.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3694-3699
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fowler, S.B.3
Marszalek, P.E.4
Broedel, S.E.5
Clarke, J.6
Fernandez, J.M.7
-
9
-
-
0036293397
-
Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR
-
Cordier, F., and S. Grzesiek. 2002. Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR. J. Mol. Biol. 715:739-752.
-
(2002)
J. Mol. Biol.
, vol.715
, pp. 739-752
-
-
Cordier, F.1
Grzesiek, S.2
-
10
-
-
0032988663
-
Strength of a weak bond connecting flexible polymer chains
-
Evans, E., and K. Ritchie. 1999. Strength of a weak bond connecting flexible polymer chains. Biophys. J. 76:2439-2447.
-
(1999)
Biophys. J.
, vol.76
, pp. 2439-2447
-
-
Evans, E.1
Ritchie, K.2
-
11
-
-
1542513548
-
Force-clamp spectroscopy monitors the folding trajectory of a single protein
-
Fernandez, J. M., and H. Li. 2004. Force-clamp spectroscopy monitors the folding trajectory of a single protein. Science. 303:1674-1678.
-
(2004)
Science
, vol.303
, pp. 1674-1678
-
-
Fernandez, J.M.1
Li, H.2
-
12
-
-
0036389817
-
Mechanical unfolding of a titin Ig domain: Structure of unfolding intermediate revealed by combining AFM, molecular dynamic simulations. NMR and protein engineering
-
Fowler, S. B., R. Best, J. L. Toca-Herrera, T. J. Rutherford, A. Steward, E. Paci, M. Karplus, and J. Clarke. 2002. Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamic simulations, NMR and protein engineering. J. Mol. Biol. 322:841-849.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 841-849
-
-
Fowler, S.B.1
Best, R.2
Toca-Herrera, J.L.3
Rutherford, T.J.4
Steward, A.5
Paci, E.6
Karplus, M.7
Clarke, J.8
-
13
-
-
0036924186
-
Steered molecular dynamics studies of titin i1 domain unfolding
-
Gao, M., W. Matthias, and K. Schulten. 2002. Steered molecular dynamics studies of titin i1 domain unfolding. Biophys. J. 83:3435-3445.
-
(2002)
Biophys. J.
, vol.83
, pp. 3435-3445
-
-
Gao, M.1
Matthias, W.2
Schulten, K.3
-
14
-
-
0016399124
-
Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from the amide crystals
-
Hagler, A. T., E. Huler, and S. Lifson. 1974. Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from the amide crystals. J. Am. Chem. Soc. 96:5319-5327.
-
(1974)
J. Am. Chem. Soc.
, vol.96
, pp. 5319-5327
-
-
Hagler, A.T.1
Huler, E.2
Lifson, S.3
-
15
-
-
0142185486
-
Unfolding mechanics of multiple OspA substructures investigated with single molecule force spectroscopy
-
Hertadi, R., F. Gruswitz, L. Silver, A. Koide, S. Koide, H. Arakawa, and A. Ikai. 2003. Unfolding mechanics of multiple OspA substructures investigated with single molecule force spectroscopy. J. Mol. Biol. 333:993-1002.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 993-1002
-
-
Hertadi, R.1
Gruswitz, F.2
Silver, L.3
Koide, A.4
Koide, S.5
Arakawa, H.6
Ikai, A.7
-
16
-
-
0036107853
-
Unfolding mechanics of holo- and apocalmodulin studied by the atomic force microscope
-
Hertadi, R., and A. Ikai. 2002. Unfolding mechanics of holo- and apocalmodulin studied by the atomic force microscope. Protein Sci. 11:1532-1538.
-
(2002)
Protein Sci.
, vol.11
, pp. 1532-1538
-
-
Hertadi, R.1
Ikai, A.2
-
17
-
-
0035075162
-
Unraveling the means to the end in ATP-dependent proteases
-
Hochstrasser, M., and J. Wang. 2001. Unraveling the means to the end in ATP-dependent proteases. Nat. Struct. Biol. 8:294-296.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 294-296
-
-
Hochstrasser, M.1
Wang, J.2
-
18
-
-
36449007442
-
Calibration of atomic force microscope tips
-
Hutter, J. L., and J. Bechhofer. 1993. Calibration of atomic force microscope tips. Rev. Sci. Instrum. 64:1868-1873.
-
(1993)
Rev. Sci. Instrum.
, vol.64
, pp. 1868-1873
-
-
Hutter, J.L.1
Bechhofer, J.2
-
19
-
-
0033594989
-
Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability
-
Ibarra-Molero, B., V. V. Lolazde, G. I. Makhatadze, and J. M. Sanchez-Ruiz. 1999. Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability. Biochemistry. 38:8138-8149.
-
(1999)
Biochemistry
, vol.38
, pp. 8138-8149
-
-
Ibarra-Molero, B.1
Lolazde, V.V.2
Makhatadze, G.I.3
Sanchez-Ruiz, J.M.4
-
20
-
-
0030061411
-
Solvent isotope effects on the refolding kinetics of hen egg-white lysozyme
-
Itzhaki, L. S., and P. A. Evans. 1996. Solvent isotope effects on the refolding kinetics of hen egg-white lysozyme. Protein Sci. 5:140-146.
-
(1996)
Protein Sci.
, vol.5
, pp. 140-146
-
-
Itzhaki, L.S.1
Evans, P.A.2
-
21
-
-
0031002460
-
Folding-unfolding transition in single titin modules characterized with laser tweezers
-
Kellermayer, M. S., S. B. Smith, H. L. Granzier, and C. Bustamante. 1997. Folding-unfolding transition in single titin modules characterized with laser tweezers. Science. 276:1112-1116.
-
(1997)
Science
, vol.276
, pp. 1112-1116
-
-
Kellermayer, M.S.1
Smith, S.B.2
Granzier, H.L.3
Bustamante, C.4
-
22
-
-
0242353807
-
Pathway shifts and thermal softening in temperature-coupled forced unfolding of spectrin domains
-
Law, R., G. Liao, S. Harper, G. Yang, D. Speicher, and D. Discher. 2003. Pathway shifts and thermal softening in temperature-coupled forced unfolding of spectrin domains. Biophys. J. 86:3286-3293.
-
(2003)
Biophys. J.
, vol.86
, pp. 3286-3293
-
-
Law, R.1
Liao, G.2
Harper, S.3
Yang, G.4
Speicher, D.5
Discher, D.6
-
23
-
-
0035266072
-
ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal
-
Lee, C., M. P. Schwartz, S. Prakash, M. Iwakura, and A. Matouschek. 2001. ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal. Mol. Cell. 7:627-637.
-
(2001)
Mol. Cell
, vol.7
, pp. 627-637
-
-
Lee, C.1
Schwartz, M.P.2
Prakash, S.3
Iwakura, M.4
Matouschek, A.5
-
24
-
-
1642444204
-
Ubiquitin-like protein domains show high resistance to mechanical unfolding similar to that of the i27 domain in titin: Evidence from simulations
-
Li, P.-C., and D. E. Makarov. 2004. Ubiquitin-like protein domains show high resistance to mechanical unfolding similar to that of the i27 domain in titin: evidence from simulations. J. Phys. Chem. B. 108:745-749.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 745-749
-
-
Li, P.-C.1
Makarov, D.E.2
-
25
-
-
0034612346
-
Atomic force microscopy reveals the mechanical design of a modular protein
-
Li, H., A. F. Oberhauser, S. B. Fowler, J. Clarice, and J. M. Fernandez. 2000. Atomic force microscopy reveals the mechanical design of a modular protein. Proc. Natl. Acad. Sci. USA. 97:6527-6531.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6527-6531
-
-
Li, H.1
Oberhauser, A.F.2
Fowler, S.B.3
Clarice, J.4
Fernandez, J.M.5
-
26
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics
-
Lu, H., B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten. 1998. Unfolding of titin immunoglobulin domains by steered molecular dynamics. Biophys. J. 75:662-671.
-
(1998)
Biophys. J.
, vol.75
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
27
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu, H., and K. Schulten. 2000. The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys. J. 79:51-65.
-
(2000)
Biophys. J.
, vol.79
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
28
-
-
0031936593
-
Anion binding to the ubiquitin molecule
-
Makhatadze, G. I., M. M. Lopez, J. M. Richardson, and S. T. Thomas. 1998. Anion binding to the ubiquitin molecule. Protein Sci. 7:689-697.
-
(1998)
Protein Sci.
, vol.7
, pp. 689-697
-
-
Makhatadze, G.I.1
Lopez, M.M.2
Richardson, J.M.3
Thomas, S.T.4
-
29
-
-
0033523904
-
Mechanical unfolding intermediates in titin modules
-
Marszalek, P., H. Lu, H. Li, M. Carrion-Vazquez, A. Oberhauser, K. Schulten, and J. Fernandez. 1999. Mechanical unfolding intermediates in titin modules. Nature. 402:100-103.
-
(1999)
Nature
, vol.402
, pp. 100-103
-
-
Marszalek, P.1
Lu, H.2
Li, H.3
Carrion-Vazquez, M.4
Oberhauser, A.5
Schulten, K.6
Fernandez, J.7
-
30
-
-
0037308999
-
Protein unfolding: An important process in vivo?
-
Matouschek, A. 2003. Protein unfolding: an important process in vivo? Curr. Opin. Struct. Biol. 13:98-109.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 98-109
-
-
Matouschek, A.1
-
31
-
-
0032708281
-
Single protein misfolding events captured by atomic force microscopy
-
Oberhauser, A. F., P. E. Marszalek, M. Carrion-Vazquez, and J. M. Fernandez. 1999. Single protein misfolding events captured by atomic force microscopy. Nat. Struct. Biol. 6:1025-1028.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1025-1028
-
-
Oberhauser, A.F.1
Marszalek, P.E.2
Carrion-Vazquez, M.3
Fernandez, J.M.4
-
32
-
-
0032516205
-
The molecular elasticity of the extracellular matrix protein tenascin
-
Oberhauser, A. F., P. E. Marszalek, H. P. Erickson, and J. M. Fernandez. 1998. The molecular elasticity of the extracellular matrix protein tenascin. Nature. 393:181-185.
-
(1998)
Nature
, vol.393
, pp. 181-185
-
-
Oberhauser, A.F.1
Marszalek, P.E.2
Erickson, H.P.3
Fernandez, J.M.4
-
33
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace, C. N. 1986. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol. 131:266-280.
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
34
-
-
0021763134
-
On the environment of ionizable groups in globular proteins
-
Rashin, A. A., and B. Honig. 1984. On the environment of ionizable groups in globular proteins. J. Mol. Biol. 173:515-521.
-
(1984)
J. Mol. Biol.
, vol.173
, pp. 515-521
-
-
Rashin, A.A.1
Honig, B.2
-
35
-
-
11544281834
-
Elastically coupled two-level systems as a model for biopolymer extensibility
-
Rief, M., J. Fernandez, and H. E. Gaub. 1998. Elastically coupled two-level systems as a model for biopolymer extensibility. Phys. Rev. Lett. 81:4764-4766.
-
(1998)
Phys. Rev. Lett.
, vol.81
, pp. 4764-4766
-
-
Rief, M.1
Fernandez, J.2
Gaub, H.E.3
-
36
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief, M., M. Gautel, F. Oesterheld, J. Fernandez, and H. Gaub. 1997. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science. 276:1109-1112.
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterheld, F.3
Fernandez, J.4
Gaub, H.5
-
37
-
-
0033582763
-
Single molecule force spectroscopy of spectrin repeats: Low unfolding forces in helix bundles
-
Rief, M., J. Pascual, M. Saraste, and H. E. Gaub. 1999. Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles. J. Mol. Biol. 286:553-561.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 553-561
-
-
Rief, M.1
Pascual, J.2
Saraste, M.3
Gaub, H.E.4
-
38
-
-
2442448427
-
The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques
-
Schlierf, M., H. Li, and J. M. Fernandez. 2004. The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques. Proc. Natl. Acad. Sci. USA. 101:7299-7304.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7299-7304
-
-
Schlierf, M.1
Li, H.2
Fernandez, J.M.3
-
39
-
-
0035075187
-
Kinetics of unfolding and folding from amide hydrogen exchange in native ubiquitin
-
Sivaraman, T., C. B. Arlington, and A. D. Robertson. 2001. Kinetics of unfolding and folding from amide hydrogen exchange in native ubiquitin. Nat. Struct. Biol. 8:331-333.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 331-333
-
-
Sivaraman, T.1
Arlington, C.B.2
Robertson, A.D.3
-
40
-
-
0025283867
-
Use of T7 RNA polymerase to direct expression of cloned genes
-
Studier, F. W., A. Rosenberg, J. J. Dunn, and J. W. Dubendoff. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185:60-89.
-
(1990)
Methods Enzymol.
, vol.185
, pp. 60-89
-
-
Studier, F.W.1
Rosenberg, A.2
Dunn, J.J.3
Dubendoff, J.W.4
-
41
-
-
0037129945
-
Electrostatic interactions in ubiquitin: Stabilization of carboxylates by lysine amino groups
-
Sundd, M., N. Iverson, B. Ibarra-Molero, J. M. Sanchez-Ruiz, and A. D. Robertson. 2002. Electrostatic interactions in ubiquitin: stabilization of carboxylates by lysine amino groups. Biochemistry. 41:7586-7596.
-
(2002)
Biochemistry
, vol.41
, pp. 7586-7596
-
-
Sundd, M.1
Iverson, N.2
Ibarra-Molero, B.3
Sanchez-Ruiz, J.M.4
Robertson, A.D.5
-
42
-
-
0030606223
-
Titration properties and thermodynamics of the transition state for folding: Comparison of two-state and multi-state folding pathways
-
Tan, Y., M. Oliveberg, and A. R. Fersht. 1996. Titration properties and thermodynamics of the transition state for folding: comparison of two-state and multi-state folding pathways. J. Mol. Biol. 264: 377-389.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 377-389
-
-
Tan, Y.1
Oliveberg, M.2
Fersht, A.R.3
-
43
-
-
0014364651
-
Protein denaturation. Part A and B
-
Tanford, C. 1968. Protein denaturation. Part A and B. Adv. Protein Chem. 23:121-282.
-
(1968)
Adv. Protein Chem.
, vol.23
, pp. 121-282
-
-
Tanford, C.1
-
44
-
-
0014718113
-
Protein denaturation. Part C
-
Tanford, C. 1970. Protein denaturation. Part C. Adv. Protein Chem. 24: 1-95.
-
(1970)
Adv. Protein Chem.
, vol.24
, pp. 1-95
-
-
Tanford, C.1
-
45
-
-
0031006659
-
Elasticity and unfolding of single molecules of the giant protein titin
-
Tskhovrebova, L., J. Trinick, J. Sleep, and R. Simmons. 1997. Elasticity and unfolding of single molecules of the giant protein titin. Nature. 387:308-312.
-
(1997)
Nature
, vol.387
, pp. 308-312
-
-
Tskhovrebova, L.1
Trinick, J.2
Sleep, J.3
Simmons, R.4
-
46
-
-
0037468835
-
Hidden complexity in the mechanical properties of titin
-
Williams, P. M., S. B. Fowler, R. B. Best, J. L. Toca-Herrera, K. A. Scott, A. Steward, and J. Clarke. 2003. Hidden complexity in the mechanical properties of titin. Nature. 422:446-449.
-
(2003)
Nature
, vol.422
, pp. 446-449
-
-
Williams, P.M.1
Fowler, S.B.2
Best, R.B.3
Toca-Herrera, J.L.4
Scott, K.A.5
Steward, A.6
Clarke, J.7
-
48
-
-
0034602693
-
Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme
-
Yang, G., C. Cecconi, W. A. Baase, I. R. Vetter, W. A. Breyer, J. A. Haack, B. W. Matthews, F. W. Dahlquist, and C. Bustamante. 2000. Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme. Proc. Natl. Acad. Sci. USA. 97:139-144.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 139-144
-
-
Yang, G.1
Cecconi, C.2
Baase, W.A.3
Vetter, I.R.4
Breyer, W.A.5
Haack, J.A.6
Matthews, B.W.7
Dahlquist, F.W.8
Bustamante, C.9
|