Molecular characterization of the first intact Transib transposon from Helicoverpa zea

Gene

Volumn 408, Issue 1-2, 2008, Pages 51-63

  Chen, Song ^a   Li, Xianchun ^a  

^a UNIVERSITY OF ARIZONA   (United States)

Author keywords

Hztransib; Nonstop mRNA decay; Transib; Transposon silencing; V(D)J recombination

Indexed keywords

CYTOCHROME P450; MESSENGER RNA; TRANSPOSASE;

3' UNTRANSLATED REGION; ANIMAL CELL; ANOPHELES GAMBIAE; ARTICLE; DNA FLANKING REGION; DROSOPHILA MELANOGASTER; FAT BODY; GENE INSERTION; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC TRANSCRIPTION; HELICOVERPA ZEA; MIDGUT; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYADENYLATION; PRIORITY JOURNAL; PROMOTER REGION; RNA TRANSLATION; TRANSPOSON; TRANSPOSON TRANSIB; WORM;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; GENES, INSECT; LEPIDOPTERA; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

ANOPHELES GAMBIAE; DROSOPHILA MELANOGASTER; HELICOVERPA ZEA; HEXAPODA;

EID: 37549037523     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.10.015     Document Type: Article

References (73)

1. Adams M.D., et al. The genome sequence of Drosophila melanogaster. Science 287 (2000) 2185-2195
2. Agrawal A., Eastman Q.M., and Schatz D.G. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature 394 (1998) 744-751
3. Allen M.L., O'Brochta D.A., Atkinson P.W., and Levesque C.S. Stable, germ-line transformation of Culex quinquefasciatus (Diptera: Culicidae). J. Med. Entomol. 38 (2001) 701-710
4. Bellen H.J., O'Kane C.J., Wilson C., Grossniklaus U., Pearson R.K., and Gehring W.J. P-element-mediated enhancer detection: a versatile method to study development in Drosophila. Genes Dev. 3 (1989) 1288-1300
5. Birchler J.A., Bhadra M.P., and Bhadra U. Making noise about silence: repression of repeated genes in animals. Curr. Opin. Genet. Dev. 10 (2000) 211-216
6. Capy P., Gasperi G., Biemont C., and Bazin C. Stress and transposable elements: co-evolution or useful parasites?. Heredity 85 (2000) 101-106
7. Castro J.P., and Carareto C.M. Drosophila melanogaster P transposable elements: mechanisms of transposition and regulation. Genetica 121 (2004) 107-118
8. Chen S., and Li X. Transposable elements are enriched within or in close proximity to xenobiotic-metabolizing cytochrome P450 genes. BMC Evol. Biol. 7 (2007) 46
9. Collier L.S., Carlson C.M., Ravimohan S., Dupuy A.J., and Largaespada D.A. Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse. Nature 436 (2005) 272-276
10. Ding S., Wu X., Li G., Han M., Zhuang Y., and Xu T. Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice. Cell 122 (2005) 473-483
11. Dupuy A.J., Akagi K., Largaespada D.A., Copeland N.G., and Jenkins N.A. Mammalian mutagenesis using a highly mobile somatic sleeping beauty transposon system. Nature 436 (2005) 221-226
12. Escoubas J.M., et al. Translational control of transposition activity of the bacterial insertion sequence IS1. EMBO J. 10 (1991) 705-712
13. Feschotte C., and Pritham E.J. DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 41 (2007) 331-368
14. Finnegan D.J. Transposable elements. Curr. Opin. Genet. Dev. 2 (1992) 861-867
15. Frischmeyer P.A., van Hoof A., O'Donnell K., Guerrerio A.L., Parker R., and Dietz H.C. An mRNA surveillance mechanism that eliminates transcripts lacking termination codons. Science 295 (2002) 2258-2261
16. Fugmann S.D., Lee A.I., Shockett P.E., Villey I.J., and Schatz D.G. The RAG proteins and V(D)J recombination: complexes, ends, and transposition. Annu. Rev. Immunol. 18 (2000) 495-527
17. Fugmann S.D., Villey I.J., Ptaszek L.M., and Schatz D.G. Identification of two catalytic residues in RAG1 that define a single active site within the RAG1/RAG2 protein complex. Mol. Cell 5 (2000) 97-107
18. Goodman C.L., Wang A.A., Nabli H., Mccintosh A.H., Wittmeyer J.L., and Grasela J.J. Development and partial characterization of heliothine cell lines from embryonic and differentiated tissues. In Vitro Cell. Dev. Biol., Anim. 40 (2004) 89-94
19. Handler A.M. Use of the piggyBac transposon for germ-line transformation of insects. Insect Biochem. Mol. Biol. 32 (2002) 1211-1220
20. Handler A.M., McCombs S.D., Fraser M.J., and Saul S.H. The lepidopteran transposon vector, piggyBac, mediates germline transformation in the Mediterranean fruitfly. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 7520-7525
21. Haren L., Ton-Hoang B., and Chandler M. Integrating DNA: transposases and retroviral integrases. Annu. Rev. Microbiol. 53 (1999) 245-281
22. Hartl D.L., Lohe A.R., and Lozovskaya E.R. Modern thoughts on an ancient mariner: function, evolution, regulation. Annu. Rev. Genet. 31 (1997) 337-358
23. Hiom K., Melek M., and Gellert M. DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocations. Cell 94 (1998) 463-470
24. Huang X., et al. Stable gene transfer and expression in human primary T cells by the Sleeping Beauty transposon system. Blood 107 (2006) 483-491
25. Inada T., and Aiba H. Translation of aberrant mRNAs lacking a termination codon or with a shortened 30-UTR is repressed after initiation in yeast. EMBO J. 24 (2005) 1584-1595
26. Isberg R.R., Lazaar A.L., and Syvanen M. Regulation of Tn5 by the right-repeat proteins: control at the level of the transposition reaction?. Cell 30 (1982) 883-892
27. Ito-Harashima S., Kuroha K., Tatematsu T., and Inada T. Translation of the poly (A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast. Genes Dev. 21 (2007) 519-524
28. Ivics Z., Hackett P.B., Plasterk R.H., and Izsvak Z. Molecular reconstruction of sleeping beauty, a Tc1-like transposon from fish, and its transposition in human cells. Cell 91 (1997) 501-510
29. Jasinskiene N., et al. Stable transposon mediated transformation of the yellow fever mosquito, Aedes aegypti, using the Hermes element from the housefly. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 3743-3747
30. Jensen S., Gassama M.P., and Heidmann T. Taming of transposable elements by homology-dependent gene silencing. Nat. Genet. 21 (1999) 209-212
31. Jensen S., Gassama M.P., and Heidmann T. Cosuppression of I transposon activity in Drosophila by I-containing sense and antisense transgenes. Genetics 153 (1999) 1767-1774
32. Kapitonov V.V., and Jurka J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 6569-6574
33. Kapitonov V.V., and Jurka J. RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biol. 3 6 (2005) e181
34. Landree M.A., Wibbenmeyer J.A., and Roth D.B. Mutational analysis of RAG-1 and RAG-2 identifies three active site amino acids in RAG-1 critical for both cleavage steps of V(D)J recombination. Genes Dev. 13 (1999) 3059-3069
35. Laski F.A., Rio D.C., and Rubin G.M. Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing. Cell 44 (1986) 7-19
36. Li X., Berenbaum M.R., and Schuler M.A. Molecular Cloning and expression of CYP6B8: a xanthotoxin-inducible cytochrome P450 cDNA from Helicoverpa zea. Insect Biochem. Mol. Biol. 30 (2000) 75-84
37. Li X., Berenbaum M.R., and Schuler M.A. Plant allelochemicals differentially regulate Helicoverpa zea cytochrome P450 genes. Insect Mol. Biol. 11 (2002) 343-352
38. Li X., Schuler M.A., and Berenbaum M.R. Jasmonate and salicylate induce expression of herbivore cytochrome P450 genes. Nature 419 (2002) 712-715
39. Li X., Schuler M.A., and Berenbaum M.R. Structural and functional divergence of insect CYP6B proteins: from specialist to generalist cytochrome P450. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 2939-2944
40. Li X., Schuler M.A., and Berenbaum M.R. Molecular mechanisms of metabolic resistance to synthetic and natural xenobiotics. Annu. Rev. Entomol. 52 (2007) 231-253
41. Lippman Z., May B., Yordan C., Singer T., and Martienssen R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1 3 (2003) e67
42. Lu C.P., Sandoval H., Brandt V.L., Rice P.A., and Roth D.B. Amino acid residues in Rag1 crucial for DNA hairpin formation. Nat. Struct. Mol. Biol. 13 (2006) 1010-1015
43. Maquat L.E. Skiing toward nonstop mRNA decay. Science 295 (2002) 2221-2222
44. Matzke M.A., Aufsatz W., Kanno T., Mette M.F., and Matzke A.J. Homology-dependent gene silencing and host defense in plants. Adv. Genet. 46 (2002) 235-275
45. + dependent. FEMS Microbiol. Lett. 243 (2005) 461-465
46. Messier T.L., O'Neill J.P., Hou S.M., Nicklas J.A., and Finette B.A. In vivo transposition mediated by V(D)J recombinase in human T lymphocytes. EMBO J. 22 (2003) 1381-1388
47. Misra S., and Rio D.C. Cytotype control of Drosophila P element transposition: the 66 kd protein is a repressor of transposase activity. Cell 62 (1990) 269-284
48. Myers E.W., and Miller W. Optimal alignments in linear-space. Comput. Appl. Biosci. 4 (1988) 11-17
49. Nicholas, K.B., Nicholas, H.B. Jr., 1997. GeneDoc: a tool for editing and annotating multiple sequence alignments. Distributed by the author.
50. Okamoto H., and Hirochika H. Silencing of transposable elements in plants. Trends Plant Sci. 6 (2001) 527-534
51. Rio D.C., Laski F.A., and Rubin G.M. Identification and immunochemical analysis of biologically active Drosophila P-element transposase. Cell 44 (1986) 21-32
52. Rubin G.M., and Spradling A.C. Genetic transformation of Drosophila with transposable element vectors. Science 218 (1982) 348-353
53. Sakano H., Huppi K., Heinrich G., and Tonegawa S. Sequences at the somatic recombination sites of immunoglobulin light-chain genes. Nature 280 (1979) 288-294
54. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 7.23-7.26.
55. Sasakura Y., Awazu S., Chiba S., Kano S., and Satoh N. Application of Minos, one of the Tc1/mariner superfamily transposable elements, to ascidian embryos as a tool for insertional mutagenesis. Gene 308 (2003) 11-20
56. Sijen T., and Plasterk R.H.A. Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 46 (2003) 310-314
57. Singer T., Yordan C., and Martienssen R.A. Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev. 15 (2001) 591-602
58. Spradling A.C., Stern D.M., Kiss I., Roote J., Laverty T., and Rubin G.M. Gene disruptions using P transposable elements: an integral component of the Drosophila genome project. Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 10824-10830
59. Sumitani M., Yamamoto D.S., Oishi K., Lee J.M., and Hatakeyama M. Germline transformation of the sawfly, Athalia rosae (Hymenoptera: Symphyta), mediated by a piggyBac-derived vector. Insect Biochem. Mol. Biol. 33 (2003) 449-458
60. Swanson P.C. The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D)J recombination. Mol. Cell. Biol. 21 (2001) 449-458
61. Tamura T., et al. A piggyBac element-derived vector efficiently promotes germ-line transformation in the silkworm Bombyx mori L. Nat. Biotechnol. 18 (2000) 81-84
62. The Arabidopsis Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408 (2000) 796-815
63. Thompson C.B. New insights into V(D)J recombination and its role in the evolution of the immune system. Immunity 3 (1995) 531-539
64. Tran R., et al. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol. 6 11 (2005) R90
65. van Hoof A., Frischmeyer P.A., Dietz H.C., and Parker R. Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science 295 (2002) 2262-2264
66. Venter J.C., et al. The sequence of the human genome. Science 291 (2001) 1304-1351
67. Versteeg R., et al. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res. 13 (2003) 1998-2004
68. Vos J.C., van Luenen H.G., and Plasterk R.H. Characterization of the Caenorhabditis elegans Tc1 transposase in vivo and in vitro. Genes Dev. 7 (1993) 1244-1253
69. Waldbauer G.P., Cohen R.W., and Friedman S. An improved procedure for laboratory rearing of the corn earworm, Heliothis zea (Lepidoptera: Noctuidae). Great Lakes Entomol. 17 (1984) 113-118
70. Wessler S.R. Turned on by stress: plant retrotransposons. Curr. Biol. 6 (1996) 959-961
71. Zagoraiou L., et al. In vivo transposition of Minos, a Drosophila mobile element, in mammalian tissues. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 11474-11478
72. Zhou L., Mitra R., Atkinson P.W., Hickman A.B., Dyda F., and Craig N.L. Transposition of hAT elements links transposable elements and V(D)J recombination. Nature 432 (2004) 995-1001
73. Zilberman D., and Henikoff S. Silencing of transposons in plant genomes: kick them when they're down. Genome Biol. 5 (2004) 249