-
1
-
-
0037204551
-
Computer systems for the prediction of xenobiotic metabolism
-
Langowski J., and Long A. Computer systems for the prediction of xenobiotic metabolism. Adv. Drug Deliv. Rev. 54 (2002) 407-415
-
(2002)
Adv. Drug Deliv. Rev.
, vol.54
, pp. 407-415
-
-
Langowski, J.1
Long, A.2
-
2
-
-
4344645978
-
Can the pharmaceutical industry reduce attrition rates?
-
Kola I., and Landis J. Can the pharmaceutical industry reduce attrition rates?. Nat. Rev. Drug Discov. 3 (2004) 711-715
-
(2004)
Nat. Rev. Drug Discov.
, vol.3
, pp. 711-715
-
-
Kola, I.1
Landis, J.2
-
3
-
-
0037364162
-
ADMET in silico modelling: towards prediction paradise?
-
van de Waterbeemd H., and Gifford E. ADMET in silico modelling: towards prediction paradise?. Nat. Rev. Drug Discov. 2 (2003) 192-204
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, pp. 192-204
-
-
van de Waterbeemd, H.1
Gifford, E.2
-
4
-
-
0034844616
-
(Q) SAR study on the metabolic stability of steroidal androgens
-
Bursi R., de Gooyer M.E., Grootenhuis A., Jacobs P.L., van der Louw J., and Leysen D. (Q) SAR study on the metabolic stability of steroidal androgens. J. Mol. Graph. Model. 19 552-556 (2001) 558-607
-
(2001)
J. Mol. Graph. Model.
, vol.19
, Issue.552-556
, pp. 558-607
-
-
Bursi, R.1
de Gooyer, M.E.2
Grootenhuis, A.3
Jacobs, P.L.4
van der Louw, J.5
Leysen, D.6
-
5
-
-
0038121705
-
Development and validation of k-nearest-neighbor QSPR models of metabolic stability of drug candidates
-
Shen M., Xiao Y., Golbraikh A., Gombar V.K., and Tropsha A. Development and validation of k-nearest-neighbor QSPR models of metabolic stability of drug candidates. J. Med. Chem. 46 (2003) 3013-3020
-
(2003)
J. Med. Chem.
, vol.46
, pp. 3013-3020
-
-
Shen, M.1
Xiao, Y.2
Golbraikh, A.3
Gombar, V.K.4
Tropsha, A.5
-
6
-
-
18144369259
-
Development of CYP3A4 inhibition models: comparisons of machine-learning techniques and molecular descriptors
-
Arimoto R., Prasad M.A., and Gifford E.M. Development of CYP3A4 inhibition models: comparisons of machine-learning techniques and molecular descriptors. J. Biomol. Screen. 10 (2005) 197-205
-
(2005)
J. Biomol. Screen.
, vol.10
, pp. 197-205
-
-
Arimoto, R.1
Prasad, M.A.2
Gifford, E.M.3
-
7
-
-
4644271822
-
Kohonen maps for prediction of binding to human cytochrome P450 3A4
-
Balakin K.V., Ekins S., Bugrim A., Ivanenkov Y.A., Korolev D., Nikolsky Y.V., Skorenko A.V., Ivashchenko A.A., Savchuk N.P., and Nikolskaya T. Kohonen maps for prediction of binding to human cytochrome P450 3A4. Drug Metab. Dispos. 32 (2004) 1183-1189
-
(2004)
Drug Metab. Dispos.
, vol.32
, pp. 1183-1189
-
-
Balakin, K.V.1
Ekins, S.2
Bugrim, A.3
Ivanenkov, Y.A.4
Korolev, D.5
Nikolsky, Y.V.6
Skorenko, A.V.7
Ivashchenko, A.A.8
Savchuk, N.P.9
Nikolskaya, T.10
-
8
-
-
23444437988
-
A rapid computational filter for cytochrome P450 1A2 inhibition potential of compound libraries
-
Chohan K.K., Paine S.W., Mistry J., Barton P., and Davis A.M. A rapid computational filter for cytochrome P450 1A2 inhibition potential of compound libraries. J. Med. Chem. 48 (2005) 5154-5161
-
(2005)
J. Med. Chem.
, vol.48
, pp. 5154-5161
-
-
Chohan, K.K.1
Paine, S.W.2
Mistry, J.3
Barton, P.4
Davis, A.M.5
-
9
-
-
0042357537
-
Generation and validation of rapid computational filters for cyp2d6 and cyp3a4
-
Ekins S., Berbaum J., and Harrison R.K. Generation and validation of rapid computational filters for cyp2d6 and cyp3a4. Drug Metab. Dispos. 31 (2003) 1077-1080
-
(2003)
Drug Metab. Dispos.
, vol.31
, pp. 1077-1080
-
-
Ekins, S.1
Berbaum, J.2
Harrison, R.K.3
-
10
-
-
22144466197
-
A support vector machine approach to classify human cytochrome P450 3A4 inhibitors
-
Kriegl J.M., Arnhold T., Beck B., and Fox T. A support vector machine approach to classify human cytochrome P450 3A4 inhibitors. J. Comput. Aided Mol. Des. 19 (2005) 189-201
-
(2005)
J. Comput. Aided Mol. Des.
, vol.19
, pp. 189-201
-
-
Kriegl, J.M.1
Arnhold, T.2
Beck, B.3
Fox, T.4
-
11
-
-
10044239599
-
Ensemble methods for classification in cheminformatics
-
Merkwirth C., Mauser H., Schulz-Gasch T., Roche O., Stahl M., and Lengauer T. Ensemble methods for classification in cheminformatics. J. Chem. Inf. Comput. Sci. 44 (2004) 1971-1978
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 1971-1978
-
-
Merkwirth, C.1
Mauser, H.2
Schulz-Gasch, T.3
Roche, O.4
Stahl, M.5
Lengauer, T.6
-
12
-
-
0037059925
-
A neural network based virtual screening of cytochrome P450 3A4 inhibitors
-
Molnar L., and Keseru G.M. A neural network based virtual screening of cytochrome P450 3A4 inhibitors. Bioorg. Med. Chem. Lett. 12 (2002) 419-421
-
(2002)
Bioorg. Med. Chem. Lett.
, vol.12
, pp. 419-421
-
-
Molnar, L.1
Keseru, G.M.2
-
13
-
-
13944268698
-
Greater than the sum of its parts: combining models for useful ADMET prediction
-
O'Brien S.E., and de Groot M.J. Greater than the sum of its parts: combining models for useful ADMET prediction. J. Med. Chem. 48 (2005) 1287-1291
-
(2005)
J. Med. Chem.
, vol.48
, pp. 1287-1291
-
-
O'Brien, S.E.1
de Groot, M.J.2
-
14
-
-
0041698413
-
Use of robust classification techniques for the prediction of human cytochrome P450 2D6 inhibition
-
Susnow R.G., and Dixon S.L. Use of robust classification techniques for the prediction of human cytochrome P450 2D6 inhibition. J. Chem. Inf. Comput. Sci. 43 (2003) 1308-1315
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 1308-1315
-
-
Susnow, R.G.1
Dixon, S.L.2
-
15
-
-
33748104432
-
Application of support vector machines to in silico prediction of cytochrome p450 enzyme substrates and inhibitors
-
Yap C.W., Xue Y., Li Z.R., and Chen Y.Z. Application of support vector machines to in silico prediction of cytochrome p450 enzyme substrates and inhibitors. Curr. Top Med. Chem. 6 (2006) 1593-1607
-
(2006)
Curr. Top Med. Chem.
, vol.6
, pp. 1593-1607
-
-
Yap, C.W.1
Xue, Y.2
Li, Z.R.3
Chen, Y.Z.4
-
16
-
-
0033569516
-
Pharmacogenomics: translating functional genomics into rational therapeutics
-
Evans W.E., and Relling M.V. Pharmacogenomics: translating functional genomics into rational therapeutics. Science 286 (1999) 487-491
-
(1999)
Science
, vol.286
, pp. 487-491
-
-
Evans, W.E.1
Relling, M.V.2
-
17
-
-
0034105896
-
In vitro-in vivo scaling of CYP kinetic data not consistent with the classical Michaelis-Menten model
-
Houston J.B., and Kenworthy K.E. In vitro-in vivo scaling of CYP kinetic data not consistent with the classical Michaelis-Menten model. Drug Metab. Dispos. 28 (2000) 246-254
-
(2000)
Drug Metab. Dispos.
, vol.28
, pp. 246-254
-
-
Houston, J.B.1
Kenworthy, K.E.2
-
18
-
-
0034541821
-
The human CYP3A subfamily: practical considerations
-
Wrighton S.A., Schuetz E.G., Thummel K.E., Shen D.D., Korzekwa K.R., and Watkins P.B. The human CYP3A subfamily: practical considerations. Drug Metab. Rev. 32 (2000) 339-361
-
(2000)
Drug Metab. Rev.
, vol.32
, pp. 339-361
-
-
Wrighton, S.A.1
Schuetz, E.G.2
Thummel, K.E.3
Shen, D.D.4
Korzekwa, K.R.5
Watkins, P.B.6
-
19
-
-
33748124863
-
Machine learning techniques for in silico modeling of drug metabolism
-
Fox T., and Kriegl J.M. Machine learning techniques for in silico modeling of drug metabolism. Curr. Top. Med. Chem. 6 (2006) 1579-1591
-
(2006)
Curr. Top. Med. Chem.
, vol.6
, pp. 1579-1591
-
-
Fox, T.1
Kriegl, J.M.2
-
20
-
-
0030799001
-
The prediction of human pharmacokinetic parameters from preclinical and in vitro metabolism data
-
Obach R.S., Baxter J.G., Liston T.E., Silber B.M., Jones B.C., MacIntyre F., Rance D.J., and Wastall P. The prediction of human pharmacokinetic parameters from preclinical and in vitro metabolism data. J. Pharmacol. Exp. Ther. 283 (1997) 46-58
-
(1997)
J. Pharmacol. Exp. Ther.
, vol.283
, pp. 46-58
-
-
Obach, R.S.1
Baxter, J.G.2
Liston, T.E.3
Silber, B.M.4
Jones, B.C.5
MacIntyre, F.6
Rance, D.J.7
Wastall, P.8
-
21
-
-
0032733974
-
Prediction of human clearance of twenty-nine drugs from hepatic microsomal intrinsic clearance data: an examination of in vitro half-life approach and nonspecific binding to microsomes
-
Obach R.S. Prediction of human clearance of twenty-nine drugs from hepatic microsomal intrinsic clearance data: an examination of in vitro half-life approach and nonspecific binding to microsomes. Drug Metab. Dispos. 27 (1999) 1350-1359
-
(1999)
Drug Metab. Dispos.
, vol.27
, pp. 1350-1359
-
-
Obach, R.S.1
-
22
-
-
0035289779
-
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
-
Lipinski C.A., Lombardo F., Dominy B.W., and Feeney P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Deliv. Rev. 46 (2001) 3-26
-
(2001)
Adv. Drug Deliv. Rev.
, vol.46
, pp. 3-26
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
23
-
-
37349126390
-
-
The MDL Drug Data Report (MDDR) database 2005.2 is an online version of the Drug Data Report journal by Prous Science Publishers and is distributed by MDL Information Systems, Inc. Coverage: 1988-2005; updated monthly. Focus: Drugs launched or under development, as referenced in the patent literature, conference proceedings, and other sources; descriptions of therapeutic action and biological activity; tracking of compounds through development phases. Size: 164,647 molecules.
-
-
-
-
24
-
-
0003526332
-
Observer agreement
-
Stokes M.E., Davis C.S., and Koch G.G. (Eds), SAS Institute, Cary, NC
-
Stokes M., Davis C., and Koch G. Observer agreement. In: Stokes M.E., Davis C.S., and Koch G.G. (Eds). Categorical Data Analysis Using the SAS System. 2nd ed. (1995), SAS Institute, Cary, NC 98-102
-
(1995)
Categorical Data Analysis Using the SAS System. 2nd ed.
, pp. 98-102
-
-
Stokes, M.1
Davis, C.2
Koch, G.3
-
25
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews B.W. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta 405 (1975) 442-451
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
26
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: an overview
-
Baldi P., Brunak S., Chauvin Y., Andersen C.A., and Nielsen H. Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 16 (2000) 412-424
-
(2000)
Bioinformatics
, vol.16
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.4
Nielsen, H.5
-
28
-
-
0035478854
-
Random forests
-
Breimann L. Random forests. Mach. Learn. 45 (2001) 5-32
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Breimann, L.1
-
29
-
-
0031211090
-
A decision-theoretic generalization of online learning and an application to boosting
-
Freund Y., and Schapire R.E. A decision-theoretic generalization of online learning and an application to boosting. J. Comput. Syst. Sci. 55 (1997) 119-139
-
(1997)
J. Comput. Syst. Sci.
, vol.55
, pp. 119-139
-
-
Freund, Y.1
Schapire, R.E.2
-
31
-
-
0030211964
-
Bagging predictors
-
Breimann L. Bagging predictors. Machine Learn. 24 (1996) 123-140
-
(1996)
Machine Learn.
, vol.24
, pp. 123-140
-
-
Breimann, L.1
-
32
-
-
37349109788
-
-
L. Breimann, Friedman. J.H., Olschen. R.A., Stone. C.J., Classification and Regression Trees, Wadsworth, 1984.
-
-
-
-
33
-
-
0030769940
-
Analysis of large structure-activity data set using recursive partitioning
-
Hawkins D.M., Young S.S., and Rusinko A.I. Analysis of large structure-activity data set using recursive partitioning. Quant. Struct. Acta Relat. 16 (1997) 296-302
-
(1997)
Quant. Struct. Acta Relat.
, vol.16
, pp. 296-302
-
-
Hawkins, D.M.1
Young, S.S.2
Rusinko, A.I.3
-
37
-
-
28944433024
-
Applying recursive partitioning to a prospective study of factors associated with adherence to mammography screening guidelines
-
Calvocoressi L., Stolar M., Kasl S.V., Claus E.B., and Jones B.A. Applying recursive partitioning to a prospective study of factors associated with adherence to mammography screening guidelines. Am J. Epidemiol. 162 (2005) 1215-1224
-
(2005)
Am J. Epidemiol.
, vol.162
, pp. 1215-1224
-
-
Calvocoressi, L.1
Stolar, M.2
Kasl, S.V.3
Claus, E.B.4
Jones, B.A.5
-
38
-
-
0345548657
-
Random forest: a classification and regression tool for compound classification and QSAR modeling
-
Svetnik V., Liaw A., Tong C., Culberson J.C., Sheridan R.P., and Feuston B.P. Random forest: a classification and regression tool for compound classification and QSAR modeling. J. Chem. Inf. Comput. Sci. 43 (2003) 1947-1958
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 1947-1958
-
-
Svetnik, V.1
Liaw, A.2
Tong, C.3
Culberson, J.C.4
Sheridan, R.P.5
Feuston, B.P.6
-
39
-
-
28944450149
-
Prediction of protein-protein interactions using random decision forest framework
-
Chen X.W., and Liu M. Prediction of protein-protein interactions using random decision forest framework. Bioinformatics 21 (2005) 4394-4400
-
(2005)
Bioinformatics
, vol.21
, pp. 4394-4400
-
-
Chen, X.W.1
Liu, M.2
-
41
-
-
33846857994
-
Random forest prediction of mutagenicity from empirical physicochemical descriptors
-
Zhang Q.Y., and Aires-de-Sousa J. Random forest prediction of mutagenicity from empirical physicochemical descriptors. J. Chem. Inf. Model. 47 (2007) 1-8
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 1-8
-
-
Zhang, Q.Y.1
Aires-de-Sousa, J.2
-
42
-
-
33645675081
-
A hybrid mixture discriminant analysis-random forest computational model for the prediction of volume of distribution of drugs in human
-
Lombardo F., Obach R.S., Dicapua F.M., Bakken G.A., Lu J., Potter D.M., Gao F., Miller M.D., and Zhang Y. A hybrid mixture discriminant analysis-random forest computational model for the prediction of volume of distribution of drugs in human. J. Med. Chem. 49 (2006) 2262-2267
-
(2006)
J. Med. Chem.
, vol.49
, pp. 2262-2267
-
-
Lombardo, F.1
Obach, R.S.2
Dicapua, F.M.3
Bakken, G.A.4
Lu, J.5
Potter, D.M.6
Gao, F.7
Miller, M.D.8
Zhang, Y.9
-
43
-
-
33845782504
-
Chemoinformatics-based classification of prohibited substances employed for doping in sport
-
Cannon E.O., Bender A., Palmer D.S., and Mitchell J.B.O. Chemoinformatics-based classification of prohibited substances employed for doping in sport. J. Chem. Inf. Model. 46 (2006) 2369-2380
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 2369-2380
-
-
Cannon, E.O.1
Bender, A.2
Palmer, D.S.3
Mitchell, J.B.O.4
-
44
-
-
33847096395
-
Bias in random forest variable importance measures: illustrations, sources and a solution
-
Strobl C., Boulesteix A.L., Zeileis A., and Hothorn T. Bias in random forest variable importance measures: illustrations, sources and a solution. BMC Bioinformatics 8 (2007) 25
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 25
-
-
Strobl, C.1
Boulesteix, A.L.2
Zeileis, A.3
Hothorn, T.4
-
45
-
-
33947517339
-
Application and comparison of classification algorithms for recognition of Alzheimer's disease in electrical brain activity EEG
-
Lehmann C., Koenig T., Jelic V., Prichep L., John R.E., Wahlund L.O., Dodge Y., and Dierks T. Application and comparison of classification algorithms for recognition of Alzheimer's disease in electrical brain activity EEG. J. Neurosci. Methods 161 (2007) 342-350
-
(2007)
J. Neurosci. Methods
, vol.161
, pp. 342-350
-
-
Lehmann, C.1
Koenig, T.2
Jelic, V.3
Prichep, L.4
John, R.E.5
Wahlund, L.O.6
Dodge, Y.7
Dierks, T.8
-
46
-
-
16444381830
-
Tumor classification by tissue microarray profiling: random forest clustering applied to renal cell carcinoma
-
Shi T., Seligson D., Belldegrun A.S., Palotie A., and Horvath S. Tumor classification by tissue microarray profiling: random forest clustering applied to renal cell carcinoma. Modern Pathology: An Official Journal of the United States and Canadian Academy of Pathology Inc. 18 (2005) 547-557
-
(2005)
Modern Pathology: An Official Journal of the United States and Canadian Academy of Pathology Inc.
, vol.18
, pp. 547-557
-
-
Shi, T.1
Seligson, D.2
Belldegrun, A.S.3
Palotie, A.4
Horvath, S.5
|