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Volumn 39, Issue 1, 2008, Pages

Examination of animal and zoonotic pathogens using microarrays

Author keywords

Detection; Host pathogen interactions; Microarray; Zoonotic

Indexed keywords

ANTIBIOTIC RESISTANCE; BACTERIAL GROWTH; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; COMPUTER PROGRAM; DNA MICROARRAY; GENE EXPRESSION; GENE FUNCTION; GENETIC VARIABILITY; GENOMICS; HOST PATHOGEN INTERACTION; MICROARRAY ANALYSIS; NONHUMAN; PATHOGENESIS; REVIEW; ANIMAL; ANIMAL DISEASE; BACTERIAL GENOME; DNA FINGERPRINTING; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METHODOLOGY; VETERINARY MEDICINE;

EID: 36448991476     PISSN: 09284249     EISSN: 12979716     Source Type: Journal    
DOI: 10.1051/vetres:2007042     Document Type: Review
Times cited : (19)

References (111)
  • 2
    • 23044488678 scopus 로고    scopus 로고
    • Detection of Salmonella spp. using microsphere-based, fiber optic DNA microarrays
    • Ahn S., Walt D.R., Detection of Salmonella spp. using microsphere-based, fiber optic DNA microarrays, Anal. Chem. (2005) 77:5041-5047.
    • (2005) Anal. Chem , vol.77 , pp. 5041-5047
    • Ahn, S.1    Walt, D.R.2
  • 3
    • 0242349629 scopus 로고    scopus 로고
    • Enhanced expression of interleukin-1 alpha and tumor necrosis factor-associated protein 1 in ileal tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis
    • Aho A.D., McNulty A.M., Coussens P.M., Enhanced expression of interleukin-1 alpha and tumor necrosis factor-associated protein 1 in ileal tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis, Infect. Immun. (2003) 71:6479-6486.
    • (2003) Infect. Immun , vol.71 , pp. 6479-6486
    • Aho, A.D.1    McNulty, A.M.2    Coussens, P.M.3
  • 4
    • 5644227318 scopus 로고    scopus 로고
    • Genotyping of Clostridium perfringens toxins using multiple oligonucleotide microarray hybridization
    • Al-Khaldi S.F., Myers K.M., Rasooly A., Chizhikov V., Genotyping of Clostridium perfringens toxins using multiple oligonucleotide microarray hybridization, Mol. Cell. Probes (2004) 18:359-367.
    • (2004) Mol. Cell. Probes , vol.18 , pp. 359-367
    • Al-Khaldi, S.F.1    Myers, K.M.2    Rasooly, A.3    Chizhikov, V.4
  • 5
    • 20244364535 scopus 로고    scopus 로고
    • Quantitative microarray-based DNA-DNA hybridization assay for measuring genetic distances among bacterial species and its application to the identification of family Enterobacteriaceae
    • Amano M., Ohkusu K., Kusaba K., Ikeda H., Nagasawa Z., Aoki Y., Kawamura Y., Kobatake S., Tanaka T., Matsuura S., Ezaki T., Quantitative microarray-based DNA-DNA hybridization assay for measuring genetic distances among bacterial species and its application to the identification of family Enterobacteriaceae, Microbiol. Immunol. (2005) 49:255-263.
    • (2005) Microbiol. Immunol , vol.49 , pp. 255-263
    • Amano, M.1    Ohkusu, K.2    Kusaba, K.3    Ikeda, H.4    Nagasawa, Z.5    Aoki, Y.6    Kawamura, Y.7    Kobatake, S.8    Tanaka, T.9    Matsuura, S.10    Ezaki, T.11
  • 6
    • 28444474563 scopus 로고    scopus 로고
    • Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray
    • Anjum M.F., Marooney C., Fookes M., Baker S., Dougan G., Ivens A., Woodward M.J., Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray, Infect. Immun. (2005) 73:7894-7905.
    • (2005) Infect. Immun , vol.73 , pp. 7894-7905
    • Anjum, M.F.1    Marooney, C.2    Fookes, M.3    Baker, S.4    Dougan, G.5    Ivens, A.6    Woodward, M.J.7
  • 7
    • 27144530664 scopus 로고    scopus 로고
    • Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes
    • Bae J.W., Rhee S.K., Nam Y.D., Park Y.H., Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes, Nucleic Acids Res. (2005) 33:e113.
    • (2005) Nucleic Acids Res , vol.33
    • Bae, J.W.1    Rhee, S.K.2    Nam, Y.D.3    Park, Y.H.4
  • 8
    • 0036557825 scopus 로고    scopus 로고
    • A 3800 gene microarray for cattle functional genomics: Comparison of gene expression in spleen, placenta, and brain
    • Band M.R., Olmstead C., Everts R.E., Liu Z.L., Lewin H.A., A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain, Anim. Biotechnol. (2002) 13:163-172.
    • (2002) Anim. Biotechnol , vol.13 , pp. 163-172
    • Band, M.R.1    Olmstead, C.2    Everts, R.E.3    Liu, Z.L.4    Lewin, H.A.5
  • 9
    • 0037378643 scopus 로고    scopus 로고
    • Regulation of ipsilateral and contralateral bovine oviduct epithelial cell function in the postovulation period: A transcriptomics approach
    • Bauersachs S., Blum H., Mallok S., Wenigerkind H., Rief S., Prelle K., Wolf E., Regulation of ipsilateral and contralateral bovine oviduct epithelial cell function in the postovulation period: a transcriptomics approach, Biol. Reprod. (2003) 68:1170-1177.
    • (2003) Biol. Reprod , vol.68 , pp. 1170-1177
    • Bauersachs, S.1    Blum, H.2    Mallok, S.3    Wenigerkind, H.4    Rief, S.5    Prelle, K.6    Wolf, E.7
  • 10
    • 33750091892 scopus 로고    scopus 로고
    • Microarray-based detection and typing of foot-and-mouth disease virus
    • Baxi M.K., Baxi S., Clavijo A., Burton K.M., Deregt D., Microarray-based detection and typing of foot-and-mouth disease virus, Vet. J. (2006) 172:473-481.
    • (2006) Vet. J , vol.172 , pp. 473-481
    • Baxi, M.K.1    Baxi, S.2    Clavijo, A.3    Burton, K.M.4    Deregt, D.5
  • 12
    • 0037614638 scopus 로고    scopus 로고
    • Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays
    • Bekal S., Brousseau R., Masson L., Prefontaine G., Fairbrother J., Harel J., Rapid identification of Escherichia coli pathotypes by virulence gene detection with DNA microarrays, J. Clin. Microbiol. (2003) 41:2113-2125.
    • (2003) J. Clin. Microbiol , vol.41 , pp. 2113-2125
    • Bekal, S.1    Brousseau, R.2    Masson, L.3    Prefontaine, G.4    Fairbrother, J.5    Harel, J.6
  • 14
    • 0036892867 scopus 로고    scopus 로고
    • Genomic scale analysis of Pasteurella multocida gene expression during growth within the natural chicken host
    • Boyce J.D., Wilkie I., Harper M., Paustian M.L., Kapur V., Genomic scale analysis of Pasteurella multocida gene expression during growth within the natural chicken host, Infect. Immun. (2002) 70:6871-6879.
    • (2002) Infect. Immun , vol.70 , pp. 6871-6879
    • Boyce, J.D.1    Wilkie, I.2    Harper, M.3    Paustian, M.L.4    Kapur, V.5
  • 15
    • 0042023306 scopus 로고    scopus 로고
    • Differences in gene content among Salmonella enterica serovar Typhi isolates
    • Boyd E.F., Porwollik S., Blackmer F., McClelland M., Differences in gene content among Salmonella enterica serovar Typhi isolates, J. Clin.Microbiol. (2003) 41:3823-3828.
    • (2003) J. Clin.Microbiol , vol.41 , pp. 3823-3828
    • Boyd, E.F.1    Porwollik, S.2    Blackmer, F.3    McClelland, M.4
  • 17
    • 0035752571 scopus 로고    scopus 로고
    • An immunogenomics approach to understanding periparturient immunosuppression and mastitis susceptibility in dairy cows
    • Burton J.L., Madsen S.A., Yao J., Sipkovsky S.S., Coussens P.M., An immunogenomics approach to understanding periparturient immunosuppression and mastitis susceptibility in dairy cows, Acta Vet. Scand. (2001) 42:407-424.
    • (2001) Acta Vet. Scand , vol.42 , pp. 407-424
    • Burton, J.L.1    Madsen, S.A.2    Yao, J.3    Sipkovsky, S.S.4    Coussens, P.M.5
  • 19
    • 22144441717 scopus 로고    scopus 로고
    • Development of a novel protein microarray method for serotyping Salmonella enterica strains
    • Cai H.Y., Lu L., Muckle C.A., Prescott J.F., Chen S., Development of a novel protein microarray method for serotyping Salmonella enterica strains, J. Clin. Microbiol. (2005) 43:3427-3430.
    • (2005) J. Clin. Microbiol , vol.43 , pp. 3427-3430
    • Cai, H.Y.1    Lu, L.2    Muckle, C.A.3    Prescott, J.F.4    Chen, S.5
  • 21
    • 0035919827 scopus 로고    scopus 로고
    • Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays
    • Call D.R., Brockman F.J., Chandler D.P., Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays, Int. J. Food Microbiol. (2001) 67:71-80.
    • (2001) Int. J. Food Microbiol , vol.67 , pp. 71-80
    • Call, D.R.1    Brockman, F.J.2    Chandler, D.P.3
  • 22
    • 33645115674 scopus 로고    scopus 로고
    • Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray
    • Call D.R., Kang M.S., Daniels J., Besser T.E., Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray, J. Appl. Microbiol. (2006) 100:15-28.
    • (2006) J. Appl. Microbiol , vol.100 , pp. 15-28
    • Call, D.R.1    Kang, M.S.2    Daniels, J.3    Besser, T.E.4
  • 23
    • 19844379463 scopus 로고    scopus 로고
    • Challenges and opportunities for pathogen detection using DNA microarrays
    • Call D.R., Challenges and opportunities for pathogen detection using DNA microarrays, Crit. Rev. Microbiol. (2005) 31:91-99.
    • (2005) Crit. Rev. Microbiol , vol.31 , pp. 91-99
    • Call, D.R.1
  • 24
    • 0037224655 scopus 로고    scopus 로고
    • Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray
    • Chan K., Baker S., Kim C.C., Detweiler C.S., Dougan G., Falkow S., Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray, J. Bacteriol. (2003) 185:553-563.
    • (2003) J. Bacteriol , vol.185 , pp. 553-563
    • Chan, K.1    Baker, S.2    Kim, C.C.3    Detweiler, C.S.4    Dougan, G.5    Falkow, S.6
  • 25
    • 23944491257 scopus 로고    scopus 로고
    • Microarray-based detection of Salmonella enterica serovar Typhimurium transposon mutants that cannot survive in macrophage and mice
    • Chan K., Kim C.C., Falkow S., Microarray-based detection of Salmonella enterica serovar Typhimurium transposon mutants that cannot survive in macrophage and mice, Infect. Immun. (2005) 73:5438-5449.
    • (2005) Infect. Immun , vol.73 , pp. 5438-5449
    • Chan, K.1    Kim, C.C.2    Falkow, S.3
  • 28
    • 16244380488 scopus 로고    scopus 로고
    • Johne's disease in cattle is associated with enhanced expression of genes encoding IL-5, GATA-3, tissue inhibitors of matrix metalloproteinase 1 and 2, and factors promoting apoptosis in peripheral blood mononuclear cells
    • Coussens P.M., Pudrith C.B., Skovgaard K., Ren X., Suchyta S.P., Stabel J.R., Heegaard P.M.H., Johne's disease in cattle is associated with enhanced expression of genes encoding IL-5, GATA-3, tissue inhibitors of matrix metalloproteinase 1 and 2, and factors promoting apoptosis in peripheral blood mononuclear cells, Vet. Immunol. Immunopathol. (2005) 105:221-234.
    • (2005) Vet. Immunol. Immunopathol , vol.105 , pp. 221-234
    • Coussens, P.M.1    Pudrith, C.B.2    Skovgaard, K.3    Ren, X.4    Suchyta, S.P.5    Stabel, J.R.6    Heegaard, P.M.H.7
  • 29
    • 1342325443 scopus 로고    scopus 로고
    • Bordetella species are distinguished by patterns of substantial gene loss and host adaptation
    • Cummings C.A., Brinig M.M., Lepp P.W., van de Pas S., Relman D.A., Bordetella species are distinguished by patterns of substantial gene loss and host adaptation, J. Bacteriol. (2004) 186:1484-1492.
    • (2004) J. Bacteriol , vol.186 , pp. 1484-1492
    • Cummings, C.A.1    Brinig, M.M.2    Lepp, P.W.3    van de Pas, S.4    Relman, D.A.5
  • 30
    • 0033781073 scopus 로고    scopus 로고
    • Using DNA microarrays to study host-microbe interactions
    • Cummings C.A., Relman D.A., Using DNA microarrays to study host-microbe interactions, Emerg. Infect. Dis. (2000) 6:513-525.
    • (2000) Emerg. Infect. Dis , vol.6 , pp. 513-525
    • Cummings, C.A.1    Relman, D.A.2
  • 31
    • 4544220703 scopus 로고    scopus 로고
    • Transcriptome of enterohemorrhagic Escherichia coli O157 adhereing to eukaryotic plasma membranes
    • Dahan S., Knutton S., Shaw R.K., Crepin V.F., Dougan G., Frankel G., Transcriptome of enterohemorrhagic Escherichia coli O157 adhereing to eukaryotic plasma membranes, Infect. Immun. (2004) 72:5452-5459.
    • (2004) Infect. Immun , vol.72 , pp. 5452-5459
    • Dahan, S.1    Knutton, S.2    Shaw, R.K.3    Crepin, V.F.4    Dougan, G.5    Frankel, G.6
  • 33
    • 84984934048 scopus 로고    scopus 로고
    • DNA microarrays in drug discovery and development
    • Debouck C., Goodfellow P.N., DNA microarrays in drug discovery and development, Nat. Genet. (1999) 21:48-50.
    • (1999) Nat. Genet , vol.21 , pp. 48-50
    • Debouck, C.1    Goodfellow, P.N.2
  • 34
    • 21144447211 scopus 로고    scopus 로고
    • Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including HilA itself
    • De Keersmaecker S.C., Marchal K., Verhoeven T.L., Engelen K., Vanderleyden J., Detweiler C.S., Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including HilA itself, J. Bacteriol. (2005) 187:4381-4391.
    • (2005) J. Bacteriol , vol.187 , pp. 4381-4391
    • De Keersmaecker, S.C.1    Marchal, K.2    Verhoeven, T.L.3    Engelen, K.4    Vanderleyden, J.5    Detweiler, C.S.6
  • 35
    • 0035826697 scopus 로고    scopus 로고
    • Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death
    • Detweiler C.S., Cunanan D.B., Falkow S., Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death, Proc. Natl. Acad. Sci. USA (2001) 8:5850-5855.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.8 , pp. 5850-5855
    • Detweiler, C.S.1    Cunanan, D.B.2    Falkow, S.3
  • 36
    • 33646569143 scopus 로고    scopus 로고
    • Detecting genetic variability among different Mycobacterium tuberculosis strains using DNA microarray technology
    • Diaz R., Siddiqi N., Rubin E.J., Detecting genetic variability among different Mycobacterium tuberculosis strains using DNA microarray technology, Tuberculosis (2006) 86:314-318.
    • (2006) Tuberculosis , vol.86 , pp. 314-318
    • Diaz, R.1    Siddiqi, N.2    Rubin, E.J.3
  • 37
    • 33645650180 scopus 로고    scopus 로고
    • Microarray based comparison of two Escherichia coli O157:H7 lineages
    • Dowd S.E., Ishizaki H., Microarray based comparison of two Escherichia coli O157:H7 lineages, BMC Microbiol. (2006) 15:30.
    • (2006) BMC Microbiol , vol.15 , pp. 30
    • Dowd, S.E.1    Ishizaki, H.2
  • 38
    • 0037369742 scopus 로고    scopus 로고
    • Microarray analysis of mRNA levels from RAW264.7 macrophages infected with Brucella abortus
    • Eskra L., Mathison A., Splitter G., Microarray analysis of mRNA levels from RAW264.7 macrophages infected with Brucella abortus, Infect. Immun. (2003) 71:1125-1133.
    • (2003) Infect. Immun , vol.71 , pp. 1125-1133
    • Eskra, L.1    Mathison, A.2    Splitter, G.3
  • 39
    • 33646691797 scopus 로고    scopus 로고
    • Global gene expression of a murein (Braun) lipoprotein mutant of Salmonella enterica Typhimurium by microarray analysis
    • Fadl A.A., Galindo C.L., Sha J., Klimpel G.R., Popov V.L., Chopra A.K., Global gene expression of a murein (Braun) lipoprotein mutant of Salmonella enterica Typhimurium by microarray analysis, Gene (2006) 374:121-127.
    • (2006) Gene , vol.374 , pp. 121-127
    • Fadl, A.A.1    Galindo, C.L.2    Sha, J.3    Klimpel, G.R.4    Popov, V.L.5    Chopra, A.K.6
  • 40
    • 32444446344 scopus 로고    scopus 로고
    • Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through selective capture of transcribed sequences
    • Faucher S.P., Porwollik S., Dozois C.M., McClelland M., Daigle F., Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through selective capture of transcribed sequences, Proc. Natl. Acad. Sci. USA (2006) 103:1906-1911.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 1906-1911
    • Faucher, S.P.1    Porwollik, S.2    Dozois, C.M.3    McClelland, M.4    Daigle, F.5
  • 41
    • 0035902534 scopus 로고    scopus 로고
    • Evolutionary genomics of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic
    • Fitzgerald J.R., Sturdevant D.E., Mackie S.M., Gill S.R., Musser J.M., Evolutionary genomics of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic, Proc. Natl. Acad. Sci. USA (2001) 98:8821-8826.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 8821-8826
    • Fitzgerald, J.R.1    Sturdevant, D.E.2    Mackie, S.M.3    Gill, S.R.4    Musser, J.M.5
  • 43
    • 32444433097 scopus 로고    scopus 로고
    • Exploring drug action on Mycobacterium tuberculosis using affymetrix oligonucleotide genechips
    • Fu L.M., Exploring drug action on Mycobacterium tuberculosis using affymetrix oligonucleotide genechips, Tuberculosis (2006) 86:134-143.
    • (2006) Tuberculosis , vol.86 , pp. 134-143
    • Fu, L.M.1
  • 45
    • 31844442925 scopus 로고    scopus 로고
    • STECEPEC oligonucleotide microarray: A new tool for typing genetic variants of the LEE pathogenicity island of human and animal Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) strains
    • Garrido P., Blanco M., Moreno-Paz M., Briones C., Dahbi G., Blanco J., Blanco J., Parro V., STECEPEC oligonucleotide microarray: a new tool for typing genetic variants of the LEE pathogenicity island of human and animal Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) strains, Clin. Chem. (2006) 52:192-201.
    • (2006) Clin. Chem , vol.52 , pp. 192-201
    • Garrido, P.1    Blanco, M.2    Moreno-Paz, M.3    Briones, C.4    Dahbi, G.5    Blanco, J.6    Blanco, J.7    Parro, V.8
  • 46
    • 33646843921 scopus 로고    scopus 로고
    • The use of biosensor and microarray techniques in the rapid detection and identification of Salmonellae
    • Goldschmidt M.C., The use of biosensor and microarray techniques in the rapid detection and identification of Salmonellae, J. AOAC Int. (2006) 89:530-537.
    • (2006) J. AOAC Int , vol.89 , pp. 530-537
    • Goldschmidt, M.C.1
  • 47
    • 0346881221 scopus 로고    scopus 로고
    • Genetic variations in peripheral blood mononuclear cells in piglets used as an animal model for staphylococcal enterotoxin exposures
    • Hammamieh R., Bi S., Mani S., Charaborty N., Mendis C., Das R., Jett M., Genetic variations in peripheral blood mononuclear cells in piglets used as an animal model for staphylococcal enterotoxin exposures, OMICS (2003) 7:401-409.
    • (2003) OMICS , vol.7 , pp. 401-409
    • Hammamieh, R.1    Bi, S.2    Mani, S.3    Charaborty, N.4    Mendis, C.5    Das, R.6    Jett, M.7
  • 48
    • 33646452547 scopus 로고    scopus 로고
    • Analyzing the dynamic bacterial glycome with a lectin microarray approach
    • Hsu K.L., Pilobello K.T., Mahal L.K., Analyzing the dynamic bacterial glycome with a lectin microarray approach, Nat. Chem. Biol. (2006) 2:153-157.
    • (2006) Nat. Chem. Biol , vol.2 , pp. 153-157
    • Hsu, K.L.1    Pilobello, K.T.2    Mahal, L.K.3
  • 50
    • 0042522548 scopus 로고    scopus 로고
    • Detection and identification of Escherichia coli, Shigella, and Salmonella by microarrays using the gyrB gene
    • Kakinuma K., Fukushima M., Kawaguchi R., Detection and identification of Escherichia coli, Shigella, and Salmonella by microarrays using the gyrB gene, Biotechnol. Bioeng. (2003) 83:721-728.
    • (2003) Biotechnol. Bioeng , vol.83 , pp. 721-728
    • Kakinuma, K.1    Fukushima, M.2    Kawaguchi, R.3
  • 51
    • 1242319477 scopus 로고    scopus 로고
    • Herpesvirus of turkeys: Microarray analysis of host gene response to infection
    • Karaca G., Anobile J., Downs D., Burnside J., Schmidt C.J., Herpesvirus of turkeys: microarray analysis of host gene response to infection, Virology (2004) 318:102-111.
    • (2004) Virology , vol.318 , pp. 102-111
    • Karaca, G.1    Anobile, J.2    Downs, D.3    Burnside, J.4    Schmidt, C.J.5
  • 52
    • 0035163351 scopus 로고    scopus 로고
    • Microarray analysis of pathogens and their interaction with hosts
    • Kato-Maeda M., Gao Q., Small P.M., Microarray analysis of pathogens and their interaction with hosts, Cell. Microbiol. (2001) 3:713-719.
    • (2001) Cell. Microbiol , vol.3 , pp. 713-719
    • Kato-Maeda, M.1    Gao, Q.2    Small, P.M.3
  • 55
    • 33645792897 scopus 로고    scopus 로고
    • Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
    • Konig R., Schramm G., Oswald M., Seitz H., Sager S., Zapatka M., Reinelt G., Eils R., Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms, BMC Bioinformatics (2006) 8:119.
    • (2006) BMC Bioinformatics , vol.8 , pp. 119
    • Konig, R.1    Schramm, G.2    Oswald, M.3    Seitz, H.4    Sager, S.5    Zapatka, M.6    Reinelt, G.7    Eils, R.8
  • 56
    • 14944340948 scopus 로고    scopus 로고
    • Use of diagnostic microarrays for determination of virulence gene patterns of Escherichia coli K1, a major cause of neonatal meningitis
    • Korczak B., Frey J., Schrenzel J., Pluschke G., Pfister R., Ehricht R., Kuhnert P., Use of diagnostic microarrays for determination of virulence gene patterns of Escherichia coli K1, a major cause of neonatal meningitis, J. Clin. Microbiol. (2005) 43:1024-1031.
    • (2005) J. Clin. Microbiol , vol.43 , pp. 1024-1031
    • Korczak, B.1    Frey, J.2    Schrenzel, J.3    Pluschke, G.4    Pfister, R.5    Ehricht, R.6    Kuhnert, P.7
  • 57
    • 27644562321 scopus 로고    scopus 로고
    • High-sensitivity, polymerase chain reaction-free detection of microorganisms and their functional genes using 70-mer oligonucleotide diagnostic microarray
    • Kostic T., Weilharter A., Sessitsch A., Bodrossy L., High-sensitivity, polymerase chain reaction-free detection of microorganisms and their functional genes using 70-mer oligonucleotide diagnostic microarray, Anal. Biochem. (2005) 346:333-335.
    • (2005) Anal. Biochem , vol.346 , pp. 333-335
    • Kostic, T.1    Weilharter, A.2    Sessitsch, A.3    Bodrossy, L.4
  • 58
    • 33645754929 scopus 로고    scopus 로고
    • Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens
    • Kostrzynska M., Bachand A., Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens, Can. J. Microbiol. (2006) 52:1-8.
    • (2006) Can. J. Microbiol , vol.52 , pp. 1-8
    • Kostrzynska, M.1    Bachand, A.2
  • 60
    • 33645777008 scopus 로고    scopus 로고
    • Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse
    • Lawley T.D., Chan K., Thompson L.J., Kim C.C., Govoni G.R., Monack D.M., Genome-wide screen for Salmonella genes required for long-term systemic infection of the mouse, PLoS Pathog. (2006) 2(2):e11.
    • (2006) PLoS Pathog , vol.2 , Issue.2
    • Lawley, T.D.1    Chan, K.2    Thompson, L.J.3    Kim, C.C.4    Govoni, G.R.5    Monack, D.M.6
  • 61
    • 13244271944 scopus 로고    scopus 로고
    • Genome-wide transcriptional response of chemostat-cultured Escherichia coli to zinc
    • Lee L.J., Barrett J.A., Poole R.K., Genome-wide transcriptional response of chemostat-cultured Escherichia coli to zinc, J. Bacteriol. (2005) 187:1124-1134.
    • (2005) J. Bacteriol , vol.187 , pp. 1124-1134
    • Lee, L.J.1    Barrett, J.A.2    Poole, R.K.3
  • 63
    • 30444441123 scopus 로고    scopus 로고
    • Detection of foot and mouth disease and porcine reproductive and respiratory syndrome viral genes using microarray chip
    • Liu Y.C., Huang G.S., Wu M.C., Hong M.Y., Hsiung K.P., Detection of foot and mouth disease and porcine reproductive and respiratory syndrome viral genes using microarray chip, Vet. Res. Commun. (2006) 30:191-204.
    • (2006) Vet. Res. Commun , vol.30 , pp. 191-204
    • Liu, Y.C.1    Huang, G.S.2    Wu, M.C.3    Hong, M.Y.4    Hsiung, K.P.5
  • 65
    • 29644431681 scopus 로고    scopus 로고
    • Transcriptional profiling of Mycoplasma hyopneumoniae during heat shock using microarrays
    • Madsen M.L., Nettleton D., Thacker E.L., Edwards R., Minion F.C., Transcriptional profiling of Mycoplasma hyopneumoniae during heat shock using microarrays, Infect. Immun. (2006) 74:160-166.
    • (2006) Infect. Immun , vol.74 , pp. 160-166
    • Madsen, M.L.1    Nettleton, D.2    Thacker, E.L.3    Edwards, R.4    Minion, F.C.5
  • 66
    • 33646119425 scopus 로고    scopus 로고
    • Genes of Escherichia coli O157:H7 that are involved in high-pressure resistance
    • Malone A.S., Chung Y.K., Yousef A.E., Genes of Escherichia coli O157:H7 that are involved in high-pressure resistance, Appl. Environ. Microbiol. (2006) 72:2661-2671.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 2661-2671
    • Malone, A.S.1    Chung, Y.K.2    Yousef, A.E.3
  • 67
    • 33644863647 scopus 로고    scopus 로고
    • Genomic comparison of Mycobacterium avium subsp. paratuberculosis sheep and cattle strains by microarray hybridization
    • Marsh I.B., Bannantine J.P., Paustian M.L., Tizard M.L., Kapur V., Whittington R.J., Genomic comparison of Mycobacterium avium subsp. paratuberculosis sheep and cattle strains by microarray hybridization, J. Bacteriol. (2006) 188:2290-2293.
    • (2006) J. Bacteriol , vol.188 , pp. 2290-2293
    • Marsh, I.B.1    Bannantine, J.P.2    Paustian, M.L.3    Tizard, M.L.4    Kapur, V.5    Whittington, R.J.6
  • 68
    • 25444504092 scopus 로고    scopus 로고
    • Microarray analysis of Haemophilus parasuis gene expression under in vitro growth conditions mimicking the in vivo environment
    • Melnikow E., Dornan S., Sargent C., Dusko M., Evans G., Gunkel N., Selzer P.M., Ullrich H.J., Microarray analysis of Haemophilus parasuis gene expression under in vitro growth conditions mimicking the in vivo environment, Vet. Microbiol. (2005) 110:255-263.
    • (2005) Vet. Microbiol , vol.110 , pp. 255-263
    • Melnikow, E.1    Dornan, S.2    Sargent, C.3    Dusko, M.4    Evans, G.5    Gunkel, N.6    Selzer, P.M.7    Ullrich, H.J.8
  • 70
    • 2442559277 scopus 로고    scopus 로고
    • Moser R.J., Reverter A., Kerr C.A., Beh K.J., Lehnert S.A., A mixed-model approach for the analysis of cDNA microarray gene expression data from extreme-performing pigs after infection with Actinobacillus pleuropneumoniae, J. Anim. Sci. (2004) 82:1261-1271.
    • Moser R.J., Reverter A., Kerr C.A., Beh K.J., Lehnert S.A., A mixed-model approach for the analysis of cDNA microarray gene expression data from extreme-performing pigs after infection with Actinobacillus pleuropneumoniae, J. Anim. Sci. (2004) 82:1261-1271.
  • 71
    • 0043209765 scopus 로고    scopus 로고
    • Transcriptional analysis of the response of poultry species to respiratory pathogens
    • Munir S., Kapur V., Transcriptional analysis of the response of poultry species to respiratory pathogens, Poult. Sci. (2003) 82:885-892.
    • (2003) Poult. Sci , vol.82 , pp. 885-892
    • Munir, S.1    Kapur, V.2
  • 72
    • 9644287961 scopus 로고    scopus 로고
    • Transcriptional response of avian cells to infection with Newcastle disease virus
    • Munir S., Sharma J.M., Kapur V., Transcriptional response of avian cells to infection with Newcastle disease virus, Virus Res. (2005) 107:103-108.
    • (2005) Virus Res , vol.107 , pp. 103-108
    • Munir, S.1    Sharma, J.M.2    Kapur, V.3
  • 74
    • 0036366541 scopus 로고    scopus 로고
    • Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli
    • Oshima T., Wada C., Kawagoe Y., Ara T., Maeda M., Masuda Y., Hiraga S., Mori H., Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli, Mol. Microbiol. (2002) 45:673-695.
    • (2002) Mol. Microbiol , vol.45 , pp. 673-695
    • Oshima, T.1    Wada, C.2    Kawagoe, Y.3    Ara, T.4    Maeda, M.5    Masuda, Y.6    Hiraga, S.7    Mori, H.8
  • 75
    • 32544461820 scopus 로고    scopus 로고
    • Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL, and NarP during anaerobic growth of Escherichia coli: New insights into microbial physiology
    • Overton T.W., Griffiths L., Patel M.D., Hobman J.L., Penn C.W., Cole J.A., Constantinidou C., Microarray analysis of gene regulation by oxygen, nitrate, nitrite, FNR, NarL, and NarP during anaerobic growth of Escherichia coli: new insights into microbial physiology, Biochem. Soc. Trans. (2006) 34:104-107.
    • (2006) Biochem. Soc. Trans , vol.34 , pp. 104-107
    • Overton, T.W.1    Griffiths, L.2    Patel, M.D.3    Hobman, J.L.4    Penn, C.W.5    Cole, J.A.6    Constantinidou, C.7
  • 76
    • 20544477004 scopus 로고    scopus 로고
    • Immunorelevant gene expression in LPS-challenged bovine mammary epithelial cells
    • Pareek R., Wellntiz O., van Dorp R., Burton J., Kerr D., Immunorelevant gene expression in LPS-challenged bovine mammary epithelial cells, J. Appl. Genet. (2005) 46:171-177.
    • (2005) J. Appl. Genet , vol.46 , pp. 171-177
    • Pareek, R.1    Wellntiz, O.2    van Dorp, R.3    Burton, J.4    Kerr, D.5
  • 77
    • 33646337396 scopus 로고    scopus 로고
    • The ability of Mycobacterium avium subsp. paratuberculosis to enter bovine epithelial cells is influenced by preexposure to a hyperosmolar environment and intracellular passage in bovine mammary epithelial cells
    • Patel D., Danelishvili L., Yamazaki Y., Alonso M., Paustian M.L., Bannantine J.P., Meunier-Goddik L., Bermudez L.E., The ability of Mycobacterium avium subsp. paratuberculosis to enter bovine epithelial cells is influenced by preexposure to a hyperosmolar environment and intracellular passage in bovine mammary epithelial cells, Infect. Immun. (2006) 74:2849-2855.
    • (2006) Infect. Immun , vol.74 , pp. 2849-2855
    • Patel, D.1    Danelishvili, L.2    Yamazaki, Y.3    Alonso, M.4    Paustian, M.L.5    Bannantine, J.P.6    Meunier-Goddik, L.7    Bermudez, L.E.8
  • 78
    • 0035010085 scopus 로고    scopus 로고
    • Pasteurella multocida gene expression in response to iron limitation
    • Paustian M.L., May B.J., Kapur V., Pasteurella multocida gene expression in response to iron limitation, Infect. Immun. (2001) 69:4109-4115.
    • (2001) Infect. Immun , vol.69 , pp. 4109-4115
    • Paustian, M.L.1    May, B.J.2    Kapur, V.3
  • 79
    • 23744505837 scopus 로고    scopus 로고
    • Pilot study to evaluate microarray hybridization as a tool for Salmonella enterica serovar Typhimurium strain differentiation
    • Pelludat C., Prager R., Tschape H., Rabsch W., Schuchhardt J., Hardt W.D., Pilot study to evaluate microarray hybridization as a tool for Salmonella enterica serovar Typhimurium strain differentiation, J. Clin. Microbiol. (2005) 43:4092-4106.
    • (2005) J. Clin. Microbiol , vol.43 , pp. 4092-4106
    • Pelludat, C.1    Prager, R.2    Tschape, H.3    Rabsch, W.4    Schuchhardt, J.5    Hardt, W.D.6
  • 83
    • 24944457214 scopus 로고    scopus 로고
    • Differences in gene content between Salmonella enterica serovar Enteritidis isolates and comparison to closely related serovars Gallinarum and Dublin
    • Porwollik S., Santiviago C.A., Cheng P., Florea L., McClelland M., Differences in gene content between Salmonella enterica serovar Enteritidis isolates and comparison to closely related serovars Gallinarum and Dublin, J. Bacteriol. (2005) 187:6545-6555.
    • (2005) J. Bacteriol , vol.187 , pp. 6545-6555
    • Porwollik, S.1    Santiviago, C.A.2    Cheng, P.3    Florea, L.4    McClelland, M.5
  • 84
    • 0037173117 scopus 로고    scopus 로고
    • Evolutionary genomics of Salmonella: Gene acquisitions revealed by microarray analysis
    • Porwollik S., Wong R.M., McClelland M., Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis, Proc. Natl. Acad. Sci. USA (2002) 99:8956-8961.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8956-8961
    • Porwollik, S.1    Wong, R.M.2    McClelland, M.3
  • 85
    • 24644493345 scopus 로고    scopus 로고
    • In vitro and intra-macrophage gene expression by Rhodococcus equi strain 103
    • Rahman M.T., Parreira V., Prescott J.F., In vitro and intra-macrophage gene expression by Rhodococcus equi strain 103, Vet. Microbiol. (2005) 110:131-140.
    • (2005) Vet. Microbiol , vol.110 , pp. 131-140
    • Rahman, M.T.1    Parreira, V.2    Prescott, J.F.3
  • 86
    • 3242745933 scopus 로고    scopus 로고
    • Comparative whole-genome hybridization reveals genomic islands in Brucella species
    • Rajashekara G., Glasner J.D., Glover D.A., Splitter G.A., Comparative whole-genome hybridization reveals genomic islands in Brucella species, J. Bacteriol. (2004) 186:5040-5051.
    • (2004) J. Bacteriol , vol.186 , pp. 5040-5051
    • Rajashekara, G.1    Glasner, J.D.2    Glover, D.A.3    Splitter, G.A.4
  • 87
    • 15444370199 scopus 로고    scopus 로고
    • Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray
    • Reen F.J., Boyd E.F., Porwollik S., Murphy B.P., Gilroy D., Fanning S., McClelland M., Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray, Appl. Environ. Microbiol. (2005) 71:1616-1625.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1616-1625
    • Reen, F.J.1    Boyd, E.F.2    Porwollik, S.3    Murphy, B.P.4    Gilroy, D.5    Fanning, S.6    McClelland, M.7
  • 88
    • 0037022354 scopus 로고    scopus 로고
    • DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete
    • Revel A.T., Talaat A.M., Norgard M.V., DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete, Proc. Natl. Acad. Sci. USA (2002) 99:1562-1567.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1562-1567
    • Revel, A.T.1    Talaat, A.M.2    Norgard, M.V.3
  • 89
    • 23244462296 scopus 로고    scopus 로고
    • Developmentally regulated intestinal expression of IFN-gamma and its target genes and the age-specific response to enteric Salmonella infection
    • Rhee S.J., Walker W.A., Cherayil B.J., Developmentally regulated intestinal expression of IFN-gamma and its target genes and the age-specific response to enteric Salmonella infection, J. Immunol. (2005) 15:1127-1136.
    • (2005) J. Immunol , vol.15 , pp. 1127-1136
    • Rhee, S.J.1    Walker, W.A.2    Cherayil, B.J.3
  • 92
    • 33745674252 scopus 로고    scopus 로고
    • Differential expression of genes encoding CD30L and P-selectin in cattle with Johne's disease: Progress toward a diagnostic gene expression signature
    • Skovgaard K., Grell S.N., Heegaard P.M., Jungersen G., Pudrith C.B., Coussens P.M., Differential expression of genes encoding CD30L and P-selectin in cattle with Johne's disease: progress toward a diagnostic gene expression signature, Vet. Immunol. Immunopathol. (2006) 112:210-224.
    • (2006) Vet. Immunol. Immunopathol , vol.112 , pp. 210-224
    • Skovgaard, K.1    Grell, S.N.2    Heegaard, P.M.3    Jungersen, G.4    Pudrith, C.B.5    Coussens, P.M.6
  • 93
    • 0036802316 scopus 로고    scopus 로고
    • mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils
    • Staudinger B.J., Oberdoerster M.A., Lewis P.J., Rosen H., mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils, J. Clin. Invest. (2002) 110:1151-1163.
    • (2002) J. Clin. Invest , vol.110 , pp. 1151-1163
    • Staudinger, B.J.1    Oberdoerster, M.A.2    Lewis, P.J.3    Rosen, H.4
  • 97
    • 33646865907 scopus 로고    scopus 로고
    • Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray
    • Tobler N.E., Pfunder M., Herzog K., Frey J.E., Altwegg M., Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray, J. Microbiol. Methods (2005) 66:116-124.
    • (2005) J. Microbiol. Methods , vol.66 , pp. 116-124
    • Tobler, N.E.1    Pfunder, M.2    Herzog, K.3    Frey, J.E.4    Altwegg, M.5
  • 99
    • 17044363144 scopus 로고    scopus 로고
    • Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis
    • Van Hoek A.H., Scholtens I.M., Cloeckaert A., Aarts H.J., Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis, J. Microbiol. Methods (2005) 62:13-23.
    • (2005) J. Microbiol. Methods , vol.62 , pp. 13-23
    • Van Hoek, A.H.1    Scholtens, I.M.2    Cloeckaert, A.3    Aarts, H.J.4
  • 103
    • 1942487896 scopus 로고    scopus 로고
    • Gene expression patterns during swarming in Salmonella typhimurium: Genes specific to surface growth and putative new motility and pathogenicity genes
    • Wang Q., Frye J.G., McClelland M., Harshey R.M., Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes, Mol. Microbiol. (2004) 52:169-187.
    • (2004) Mol. Microbiol , vol.52 , pp. 169-187
    • Wang, Q.1    Frye, J.G.2    McClelland, M.3    Harshey, R.M.4
  • 104
    • 5344228697 scopus 로고    scopus 로고
    • Sequential patterns of gene expression by bovine monocyte-derived macrophages associated with ingestion of mycobacterial organisms
    • Weiss D.J., Evanson O.A., Deng M., Abrahamsen M.S., Sequential patterns of gene expression by bovine monocyte-derived macrophages associated with ingestion of mycobacterial organisms, Microb. Pathog. (2004) 37:215-224.
    • (2004) Microb. Pathog , vol.37 , pp. 215-224
    • Weiss, D.J.1    Evanson, O.A.2    Deng, M.3    Abrahamsen, M.S.4
  • 105
    • 24944587967 scopus 로고    scopus 로고
    • Ability to differentiate between cp and ncp BVDV by microarrays: Towards an application in clinical veterinary medicine?
    • Werling D., Ruryk A., Heaney J., Moeller E., Brownlie J., Ability to differentiate between cp and ncp BVDV by microarrays: towards an application in clinical veterinary medicine? Vet. Immunol. Immunopathol. (2005) 108:157-164.
    • (2005) Vet. Immunol. Immunopathol , vol.108 , pp. 157-164
    • Werling, D.1    Ruryk, A.2    Heaney, J.3    Moeller, E.4    Brownlie, J.5
  • 109
    • 1542719398 scopus 로고    scopus 로고
    • DNA microarray for discrimination between pathogenic O157:H7 EDL933 and non-pathogenic Escherichia coli strains, Biosens
    • Wu C.F., Valdes J.J., Bentley W.E., Sekowski J.W., DNA microarray for discrimination between pathogenic O157:H7 EDL933 and non-pathogenic Escherichia coli strains, Biosens. Biochem. (2003) 30:1-8.
    • (2003) Biochem , vol.30 , pp. 1-8
    • Wu, C.F.1    Valdes, J.J.2    Bentley, W.E.3    Sekowski, J.W.4
  • 111
    • 4644331457 scopus 로고    scopus 로고
    • Genome image programs: Visualization and interpretation of Escherichia coli microarray experiments
    • Zimmer D.P., Paliy O., Thomas B., Gyaneshwar P., Kustu S., Genome image programs: Visualization and interpretation of Escherichia coli microarray experiments, Genetics (2004) 167:2111-2119.
    • (2004) Genetics , vol.167 , pp. 2111-2119
    • Zimmer, D.P.1    Paliy, O.2    Thomas, B.3    Gyaneshwar, P.4    Kustu, S.5


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