Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains recently isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray

Applied and Environmental Microbiology

Volumn 71, Issue 3, 2005, Pages 1616-1625

  Reen, F J ^a   Boyd, E F ^a   Porwollik, S ^d   Murphy, B P ^b   Gilroy, D ^b   Fanning, S ^c   McClelland, M ^d  

^a UNIVERSITY COLLEGE CORK   (Ireland)

^b Munster Technological University   (Ireland)

^c UNIVERSITY COLLEGE DUBLIN   (Ireland)

^d SIDNEY KIMMEL CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPHAGES; DISEASES; DNA; GENES; GENETIC ENGINEERING; PROTEINS; SUGAR (SUCROSE);

ENTEROCOLITIS; GASTROENTERITIS; PATHOGENECITY; PROPHAGES;

BACTERIA;

MEMBRANE PROTEIN;

COMPARATIVE STUDY; GENETIC VARIATION;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIOPHAGE; BACTERIUM ISOLATION; CANADA; CATTLE; COMPARATIVE STUDY; DNA DNA HYBRIDIZATION; DNA MICROARRAY; ENTEROCOLITIS; FILTER; FIMBRIA; GASTROENTERITIS; GENETIC VARIABILITY; GEOGRAPHICAL VARIATION (SPECIES); IRELAND; LETHALITY; METABOLISM; MILK; NONHUMAN; PATHOGENICITY ISLAND; PROPHAGE; PROPHAGE FELS 1; PROPHAGE FELS 2; PROPHAGE GIFSY 1; PROPHAGE GIFSY 2; SALMONELLA AGONA; SALMONELLA DUBLIN; SALMONELLA DUBLIN DU2; SALMONELLA ENTERICA; SALMONELLA TYPHIMURIUM; SALMONELLA TYPHIMURIUM LT2; SPV GENE; STRAIN DIFFERENCE; TIME; TRANSCRIPTION REGULATION;

ANIMALS; CATTLE; DNA, BACTERIAL; FEMALE; FILTRATION; FOOD MICROBIOLOGY; GENOME, BACTERIAL; HUMANS; IRELAND; MILK; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASMIDS; PROPHAGES; RNA, BACTERIAL; RNA, TRANSFER; SALMONELLA ENTERICA; SALMONELLA FOOD POISONING; SALMONELLA TYPHIMURIUM; VARIATION (GENETICS); VIRULENCE;

BOVINAE; SALMONELLA; SALMONELLA ENTERICA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR DUBLIN; TYPHIMURIUM;

EID: 15444370199     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.3.1616-1625.2005     Document Type: Article

References (34)

1. Amavisit, P., D. Lightfoot, G. F. Browning, and P. F. Markham. 2003. Variation between pathogenic serovars within Salmonella pathogenicity islands. J. Bacteriol. 185:3624-3635.
2. Boyd, E. F., S. Porwollik, F. Blackmer, and M. McClelland. 2003. Differences in gene content among Salmonella enterica serovar Typhi isolates. J. Clin. Microbiol. 41:3823-3828.
3. Boyd, E. F., F. S. Wang, P. Beltran, S. A. Plock, K. Nelson, and R. K. Selander. 1993. Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I. J. Gen. Microbiol. 139:1125-1132.
4. Chan, K., S. Baker, C. C. Kim, C. S. Detweiler, G. Dougan, and S. Falkow. 2003. Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray. J. Bacteriol. 185:553-563.
5. Cormican, M., N. DeLappe, C. O'Hare, G. Doran, D. Morris, G. Corbett-Feeney, S. Fanning, M. Daly, M. Fitzgerald, and J. Moore. 2002. Salmonella enterica serotype Bredeney: antimicrobial susceptibility and molecular diversity of isolates from Ireland and Northern Ireland. Appl. Environ. Microbiol. 68:181-186.
6. Daly, M., J. Buckley, E. Power, C. O'Hare, M. Cormican, B. Cryan, P. G. Wall, and S. Fanning. 2000. Molecular characterization of Irish Salmonella enterica serotype Typhimurium: detection of class I integrons and assessment of genetic relationships by DNA amplification fingerprinting. Appl. Environ. Microbiol. 66:614-619.
7. Dobrindt, U., B. Hochhut, U. Hentschel, and J. Hacker. 2004. Genomic islands in pathogenic and environmental microorganisms. Nat. Rev. Microbiol. 2:414-424.
8. Ewing, W. H. 1986. Edwards and Ewing's identification of Enterobacteriaceae, 4th ed. Elsevier Science Publishing Co., Inc., New York, N.Y.
9. Figueroa-Bossi, N., E. Coissac, P. Netter, and L. Bossi. 1997. Unsuspected prophage-like elements in Salmonella typhimurium. Mol. Microbiol. 25:161-173.
10. Figueroa-Bossi, N., S. Uzzau, D. Maloriol, and L. Bossi. 2001. Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella. Mol. Microbiol. 39:260-271.
11. Fitzgerald, C., R. Sherwood, L. L. Gheesling, F. W. Brenner, and P. I. Fields. 2003. Molecular analysis of the rfb O antigen gene cluster of Salmonella enterica serogroup O:6,14 and development of a serogroup-specific PCR assay. Appl. Environ. Microbiol. 69:6099-6105.
12. Garaizar, J., S. Porwollik, A. Echeita, A. Remeuteria, S. Herrera, R. M. Wong, J. Frye, M. A. Usera, and M. McClelland. 2002. DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar. J. Clin. Microbiol. 40:2074-2078.
13. Gebreyes, W. A., S. Thakur, P. R. Davies, J. A. Funk, and C. Altier. 2004. Trends in antimicrobial resistance, phage types and integrons among Salmonella serotypes from pigs, 1997-2000. J. Antimicrob. Chemother 53:997-1003.
14. Gonzalez, M., E. G. Frank, A. S. Levine, and R. Woodgate. 1998. Lon-mediated proteolysis of the Escherichia coli UmuD mutagenesis protein: in vitro degradation and identification of residues required for proteolysis. Genes Dev. 12:3889-3899.
15. Guinee, P. A., E. H. Kampelmacher, and H. M. Willems. 1961. Six new Salmonella types, isolated in Ghana (S. Volta, S. Agona, S. Wa, S. Techimani, S. Mampong and S. Tafo). Antonie Leeuwenhoek 27:469-472.
16. Gunn, J. S., W. J. Belden, and S. I. Miller. 1998. Identification of PhoP-PhoQ activated genes within a duplicated region of the Salmonella typhimurium chromosome. Microb. Pathog. 25:77-90.
17. Hansen-Wester, I., and M. Hensel. 2002. Genome-based identification of chromosomal regions specific for Salmonella spp. Infect. Immun. 70:2351-2360.
18. Hellerqvist, G. C., B. Lindberg, and S. Svensson. 1968. Structural studies on the O-specific side-chains of the cell-wall lipopolysaccharide. Carbohydr. Res. 8:43-55.
19. th ed. Food and Drug Administration, Washington, D.C.
20. Kennedy, M., R. Villar, D. J. Vugia, T. Rabatsky-Ehr, M. M. Farley, M. Pass, K. Smith, P. Smith, P. R. Cieslak, B. Imhoff, and P. M. Griffin. 2004. Hospitalizations and deaths due to Salmonella infections, FoodNet, 1996-1999. Clin. Infect. Dis. 38(Suppl. 3):S142-S148.
21. Killalea, D., L. R. Ward, D. Roberts, J. de Louvois, F. Sufi, J. M. Stuart, P. G. Wall, M. Susman, M. Schwieger, P. J. Sanderson, I. S. Fisher, P. S. Mead, O. N. Gill, C. L. Bartlett, and B. Rowe. 1996. International epidemiological and microbiological study of outbreak of Salmonella Agona infection from a ready to eat savoury snack. I. England and Wales and the United States. BMJ 313:1105-1107.
22. AL, p. 427-458. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 1. Williams and Wilkins, Baltimore, Md.
23. Le Minor, L., and J. Bockemuhl. 1988. 1987 supplement (no. 31) to the schema of Kauffmann-White. Ann. Inst. Pasteur Microbiol. 139:331-335.
24. McClelland, M., K. E. Sanderson, J. Spieth, S. W. Clifton, P. Latreille, L. Courtney, S. Porwollik, J. Ali, M. Dante, F. Du, S. Hou, D. Layman, S. Leonard, C. Nguyen, K. Scott, A. Holmes, N. Grewal, E. Mulvaney, E. Ryan, H. Sun, L. Florea, W. Miller, T. Stoneking, M. Nhan, R. Waterston, and R. K. Wilson. 2001. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413:852-856.
25. Ochman, H., and E. A. Groisman. 1996. Distribution of pathogenicity islands in Salmonella spp. Infect. Immun. 64:5410-5412.
26. Porwollik, S., E. F. Boyd, C. Choy, P. Cheng, L. Florea, E. Proctor, and M. McClelland. 2004. Characterization of Salmonella enterica subspecies I genovars using microarrays. J. Bacteriol. 186:5883-5898.
27. Porwollik, S., and M. McClelland. 2003. Lateral gene transfer in Salmonella. Microbes Infect. 5:977-989.
28. Porwollik, S., R. M. Wong, R. A. Helm, K. K. Edwards, M. Calcutt, A. Eisenstark, and M. McClelland. 2004. DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures. J. Bacteriol. 186:1678-1682.
29. Porwollik, S., R. M. Wong, and M. McClelland. 2002. Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc. Natl. Acad. Sci. USA 99:8956-S961.
30. Porwollik, S., R. M. Wong, S. H. Sims, R. M. Schaaper, D. M. DeMarini, and M. McClelland. 2001. The DeltauvrB mutations in the Ames strains of Salmonella span 15 to 119 genes. Mutat. Res. 483:1-11.
31. Smith, N. H., P. Beltran, and R. K. Selander. 1990. Recombination of Salmonella phase 1 flagellin genes generates new serovars. J. Bacteriol. 172:2209-2216.
32. Smith, N. H., and R. K. Selander. 1991. Molecular genetic basis for complex flagellar antigen expression in a triphasic serovar of Salmonella. Proc. Natl. Acad. Sci. USA 88:956-960.
33. Smith, N. H., and R. K. Selander. 1990. Sequence invariance of the antigen-coding central region of the phase 1 flagellar filament gene (fliC) among strains of Salmonella typhimurium. J. Bacteriol. 172:603-609.
34. Townsend, S. M., N. E. Kramer, R. Edwards, S. Baker, N. Hamlin, M. Simmonds, K. Stevens, S. Maloy, J. Parkhill, G. Dougan, and A. J. Baumler. 2001. Salmonella enterica serovar Typhi possesses a unique repertoire of fimbrial gene sequences. Infect. Immun. 69:2894-2901.