메뉴 건너뛰기




Volumn 66, Issue 1, 2006, Pages 116-124

Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-Microarray

Author keywords

Diagnostics; Microarray; Mycobacteria; Real time PCR; Smart Cycler II; Tuberculosis

Indexed keywords

HEAT SHOCK PROTEIN;

EID: 33646865907     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2005.10.016     Document Type: Article
Times cited : (40)

References (31)
  • 1
    • 0347481283 scopus 로고    scopus 로고
    • A role for arrays in clinical virology: fact or fiction?
    • Clewley J.P. A role for arrays in clinical virology: fact or fiction?. J. Clin. Virol. 29 (2004) 2-12
    • (2004) J. Clin. Virol. , vol.29 , pp. 2-12
    • Clewley, J.P.1
  • 2
    • 1542712358 scopus 로고    scopus 로고
    • IS900/ERIC-PCR as a tool to distinguish Mycobacterium avium subsp. paratuberculosis from closely related mycobacteria
    • Englund S. IS900/ERIC-PCR as a tool to distinguish Mycobacterium avium subsp. paratuberculosis from closely related mycobacteria. Vet. Microbiol. 96 (2003) 277-287
    • (2003) Vet. Microbiol. , vol.96 , pp. 277-287
    • Englund, S.1
  • 4
    • 8644226072 scopus 로고    scopus 로고
    • Infections due to non-tuberculous mycobacteria (NTM)
    • Katoch V.M. Infections due to non-tuberculous mycobacteria (NTM). Indian J. Med. Res. 120 (2004) 290-304
    • (2004) Indian J. Med. Res. , vol.120 , pp. 290-304
    • Katoch, V.M.1
  • 5
    • 0027451410 scopus 로고
    • Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory
    • Kirschner P., Springer B., Vogel U., Meier A., Wrede A., Kiekenbeck M., et al. Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory. J. Clin. Microbiol. 31 (1993) 2882-2889
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2882-2889
    • Kirschner, P.1    Springer, B.2    Vogel, U.3    Meier, A.4    Wrede, A.5    Kiekenbeck, M.6
  • 7
    • 0028840458 scopus 로고
    • PCR assay based on DNA coding for 16S rRNA for detection and identification of mycobacteria in clinical samples
    • Kox L.F., van Leeuwen J., Knijper S., Jansen H.M., and Kolk A.H. PCR assay based on DNA coding for 16S rRNA for detection and identification of mycobacteria in clinical samples. J. Clin. Microbiol. 33 (1995) 3225-3233
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 3225-3233
    • Kox, L.F.1    van Leeuwen, J.2    Knijper, S.3    Jansen, H.M.4    Kolk, A.H.5
  • 8
  • 9
    • 1842535013 scopus 로고    scopus 로고
    • Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays
    • Letowski J., Brousseau R., and Masson L. Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays. J. Microbiol. Methods 57 (2004) 269-278
    • (2004) J. Microbiol. Methods , vol.57 , pp. 269-278
    • Letowski, J.1    Brousseau, R.2    Masson, L.3
  • 10
    • 0026709731 scopus 로고
    • Mixed bronchial infection due to Mycobacterium tuberculosis and Mycobacterium avium-intracellulare in an AIDS patient
    • Libanore M., Bicocchi R., and Ghinelli F. Mixed bronchial infection due to Mycobacterium tuberculosis and Mycobacterium avium-intracellulare in an AIDS patient. Infection 20 (1992) 298-299
    • (1992) Infection , vol.20 , pp. 298-299
    • Libanore, M.1    Bicocchi, R.2    Ghinelli, F.3
  • 11
    • 0037628335 scopus 로고    scopus 로고
    • Cloning and sequencing an unknown gene of Tropheryma whipplei and development of two LightCycler PCR assays
    • Maibach R.C., and Altwegg M. Cloning and sequencing an unknown gene of Tropheryma whipplei and development of two LightCycler PCR assays. Diagn. Microbiol. Infect. Dis. 46 (2003) 181-187
    • (2003) Diagn. Microbiol. Infect. Dis. , vol.46 , pp. 181-187
    • Maibach, R.C.1    Altwegg, M.2
  • 12
    • 0028821285 scopus 로고
    • A region upstream of the structural gene coding for the 65 kDa antigen is a putative target for mycobacterial species identification
    • Martinetti Lucchini G., Schmidheini T., and Altwegg M. A region upstream of the structural gene coding for the 65 kDa antigen is a putative target for mycobacterial species identification. Med. Microbiol. Lett. 4 (1995) 333-340
    • (1995) Med. Microbiol. Lett. , vol.4 , pp. 333-340
    • Martinetti Lucchini, G.1    Schmidheini, T.2    Altwegg, M.3
  • 13
    • 18444363918 scopus 로고    scopus 로고
    • Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array
    • McKendry R., Zhang J., Arntz Y., Strunz T., Hegner M., Lang H.P., et al. Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 9783-9788
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 9783-9788
    • McKendry, R.1    Zhang, J.2    Arntz, Y.3    Strunz, T.4    Hegner, M.5    Lang, H.P.6
  • 14
    • 17944366190 scopus 로고    scopus 로고
    • Detection of rifampicin-resistant Mycobacterium tuberculosis strains by hybridization and polymerase chain reaction on a specialized TB-microchip
    • Mikhailovich V.M., Lapa S.A., Gryadunov D.A., Strizhkov B.N., Sobolev A.Y., Skotnikova O.I., et al. Detection of rifampicin-resistant Mycobacterium tuberculosis strains by hybridization and polymerase chain reaction on a specialized TB-microchip. Bull. Exp. Biol. Med. 131 (2001) 94-98
    • (2001) Bull. Exp. Biol. Med. , vol.131 , pp. 94-98
    • Mikhailovich, V.M.1    Lapa, S.A.2    Gryadunov, D.A.3    Strizhkov, B.N.4    Sobolev, A.Y.5    Skotnikova, O.I.6
  • 15
    • 0036830439 scopus 로고    scopus 로고
    • A real time PCR assay for the detection and quantitation of Mycobacterium avium subsp. paratuberculosis using SYBR Green and the Light Cycler
    • O'Mahony J., and Hill C. A real time PCR assay for the detection and quantitation of Mycobacterium avium subsp. paratuberculosis using SYBR Green and the Light Cycler. J. Microbiol. Methods 51 (2002) 283-293
    • (2002) J. Microbiol. Methods , vol.51 , pp. 283-293
    • O'Mahony, J.1    Hill, C.2
  • 16
    • 0025171362 scopus 로고
    • Detection and identification of Mycobacterium tuberculosis by DNA amplification
    • Pao C.C., Yen T.S., You J.B., Maa J.S., Fiss E.H., and Chang C.H. Detection and identification of Mycobacterium tuberculosis by DNA amplification. J. Clin. Microbiol. 28 (1990) 1877-1880
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1877-1880
    • Pao, C.C.1    Yen, T.S.2    You, J.B.3    Maa, J.S.4    Fiss, E.H.5    Chang, C.H.6
  • 17
    • 2342418470 scopus 로고    scopus 로고
    • Tuberculosis in New York city: recent lessons and a look ahead
    • Paolo Jr. W.F., and Nosanchuk J.D. Tuberculosis in New York city: recent lessons and a look ahead. Lancet Infect. Dis. 4 (2004) 287-293
    • (2004) Lancet Infect. Dis. , vol.4 , pp. 287-293
    • Paolo Jr., W.F.1    Nosanchuk, J.D.2
  • 18
    • 0037335692 scopus 로고    scopus 로고
    • Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
    • Peplies J., Glockner F.O., and Amann R. Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl. Environ. Microbiol. 69 (2003) 1397-1407
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1397-1407
    • Peplies, J.1    Glockner, F.O.2    Amann, R.3
  • 19
    • 26444546906 scopus 로고    scopus 로고
    • Dissociation analysis in polymerase chain reaction and 1× SSC buffer as a prerequisite for selection of 13mer microarray probe sets with uniform hybridization behavior
    • Pfunder M., and Frey J.E. Dissociation analysis in polymerase chain reaction and 1× SSC buffer as a prerequisite for selection of 13mer microarray probe sets with uniform hybridization behavior. Mol. Biotechnol. 29 (2005) 1-10
    • (2005) Mol. Biotechnol. , vol.29 , pp. 1-10
    • Pfunder, M.1    Frey, J.E.2
  • 20
    • 1942453353 scopus 로고    scopus 로고
    • Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers
    • Pfunder M., Holzgang O., and Frey J.E. Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Mol. Ecol. 13 (2004) 1277-1286
    • (2004) Mol. Ecol. , vol.13 , pp. 1277-1286
    • Pfunder, M.1    Holzgang, O.2    Frey, J.E.3
  • 21
    • 0026639504 scopus 로고
    • Differentiation of slowly growing Mycobacterium species, including Mycobacterium tuberculosis, by gene amplification and restriction fragment length polymorphism analysis
    • Plikaytis B.B., Plikaytis B.D., Yakrus M.A., Butler W.R., Woodley C.L., Silcox V.A., et al. Differentiation of slowly growing Mycobacterium species, including Mycobacterium tuberculosis, by gene amplification and restriction fragment length polymorphism analysis. J. Clin. Microbiol. 30 (1992) 1815-1822
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 1815-1822
    • Plikaytis, B.B.1    Plikaytis, B.D.2    Yakrus, M.A.3    Butler, W.R.4    Woodley, C.L.5    Silcox, V.A.6
  • 23
    • 0042921303 scopus 로고    scopus 로고
    • Development and application of real-time PCR assay for quantification of Mycobacterium ulcerans DNA
    • Rondini S., Mensah-Quainoo E., Troll H., Bodmer T., and Pluschke G. Development and application of real-time PCR assay for quantification of Mycobacterium ulcerans DNA. J. Clin. Microbiol. 41 (2003) 4231-4237
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 4231-4237
    • Rondini, S.1    Mensah-Quainoo, E.2    Troll, H.3    Bodmer, T.4    Pluschke, G.5
  • 24
    • 0031974203 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences
    • Roth A., Fischer M., Hamid M.E., Michalke S., Ludwig W., and Mauch H. Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J. Clin. Microbiol. 36 (1998) 139-147
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 139-147
    • Roth, A.1    Fischer, M.2    Hamid, M.E.3    Michalke, S.4    Ludwig, W.5    Mauch, H.6
  • 25
    • 84984934354 scopus 로고    scopus 로고
    • Molecular interactions on microarrays
    • Southern E., Mir K., and Shchepinov M. Molecular interactions on microarrays. Nat. Genet. 21 (1999) 5-9
    • (1999) Nat. Genet. , vol.21 , pp. 5-9
    • Southern, E.1    Mir, K.2    Shchepinov, M.3
  • 27
    • 0027514742 scopus 로고
    • Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis
    • Telenti A., Marchesi F., Balz M., Bally F., Bottger E.C., and Bodmer T. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J. Clin. Microbiol. 31 (1993) 175-178
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 175-178
    • Telenti, A.1    Marchesi, F.2    Balz, M.3    Bally, F.4    Bottger, E.C.5    Bodmer, T.6
  • 28
    • 0032956681 scopus 로고    scopus 로고
    • Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays
    • Troesch A., Nguyen H., Miyada C.G., Desvarenne S., Gingeras T.R., Kaplan P.M., et al. Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays. J. Clin. Microbiol. 37 (1999) 49-55
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 49-55
    • Troesch, A.1    Nguyen, H.2    Miyada, C.G.3    Desvarenne, S.4    Gingeras, T.R.5    Kaplan, P.M.6
  • 29
    • 0042922317 scopus 로고    scopus 로고
    • Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis
    • Volokhov D., Chizhikov V., Chumakov K., and Rasooly A. Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J. Clin. Microbiol. 41 (2003) 4071-4080
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 4071-4080
    • Volokhov, D.1    Chizhikov, V.2    Chumakov, K.3    Rasooly, A.4
  • 30
    • 0031022694 scopus 로고    scopus 로고
    • Continuous fluorescence monitoring of rapid cycle DNA amplification
    • Wittwer C.T., Herrmann M.G., Moss A.A., and Rasmussen R.P. Continuous fluorescence monitoring of rapid cycle DNA amplification. Biotechniques 22 130-131 (1997) 134-138
    • (1997) Biotechniques , vol.22 , Issue.130-131 , pp. 134-138
    • Wittwer, C.T.1    Herrmann, M.G.2    Moss, A.A.3    Rasmussen, R.P.4
  • 31
    • 0026643863 scopus 로고
    • Mycobacterial diseases other than tuberculosis
    • Wolinsky E. Mycobacterial diseases other than tuberculosis. Clin. Infect. Dis. 15 (1992) 1-10
    • (1992) Clin. Infect. Dis. , vol.15 , pp. 1-10
    • Wolinsky, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.