Development of a peptide probe for the occurrence of hydrogen ( 1H/2H) scrambling upon gas-phase fragmentation

Analytical Chemistry

Volumn 79, Issue 22, 2007, Pages 8686-8693

  Rand, Kasper D ^a,b   Jørgensen, Thomas J D ^b  

^a NOVO NORDISK A S   (Denmark)

^b UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; ENZYME ACTIVITY; HYDROGEN; MASS SPECTROMETRY; SENSITIVITY ANALYSIS;

ENERGY COLLISIONAL ACTIVATION; GAS PHASE FRAGMENTATION;

PEPTIDES;

AMINO ACID; HYDROGEN; PEPTIDE;

ARTICLE; ELECTROSPRAY; ENERGY; FRAGMENTATION REACTION; GAS ANALYSIS; ISOTOPE LABELING; MOLECULAR PROBE; PROTEIN ANALYSIS; PROTEIN PROBE; SENSITIVITY ANALYSIS; TANDEM MASS SPECTROMETRY;

AMIDES; AMINO ACID SEQUENCE; GASES; HYDROGEN; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDES;

EID: 36448938198     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0710782     Document Type: Article

References (44)

1. Hoofnagle, A. N.; Resing, K. A.; Ahn, N. G. Annu. Rev. Biophys. Biomol. Struct. 2003, 32, 1-25.
2. Konermann, L.; Simmons, D. A. Mass Spectrom. Rev. 2003, 22, 1-26.
3. Wales, T. E.; Engen, J. R. Mass Spectrom. Rev. 2006, 25, 158-170.
4. Zhang, Z.; Smith, D. L. Protein Sci. 1993, 2, 522-531.
5. Arlington, C. B.; Teesch, L. M.; Robertson, A. D. J. Mol. Biol. 1999, 285, 1265-1275.
6. Canet, D.; Last, A. M.; Tito, P.; Sunde, M.; Spencer, A.; Archer, D. B.; Redfield, C.; Robinson, C. V.; Dobson, C. M. Nat. Struct. Mol. Biol. 2002, 9, 308-315.
7. Engen, J. R.; Smithgall, T. E.; Gmeiner, W. H.; Smith, D. L. Biochemistry 1997, 36, 14384-14391.
8. Heegaard, N. H. H.; Jørgensen, T. J. D.; Rozlosnik, N.; Corlin, D. B.; Pedersen, J. S.; Tempesta, A. G.; Roepstorff, P.; Bauer, R.; Nissen, M. H. Biochemistry 2005, 44, 4397-4407.
9. Miranker, A.; Robinson, C. V.; Radford, S. E.; Aplin, R. T.; Dobson, C. M. Science 1993, 262, 896-900.
10. Jørgensen, T. J. D.; Gårdsvoll, H.; Dane, K.; Roepstorff, P.; Ploug, M. Biochemistry 2004, 43, 15044-15057.
11. Rand, K. D.; Jørgensen, T. J. D.; Olsen, O. H.; Persson, E.; Jensen, O. N.; Stennicke, H. R.; Andersen, M. D. J. Biol. Chem. 2006, 281, 23018-23024.
12. Akashi, S.; Naito, Y.; Takio, K. Anal. Chem. 1999, 71, 4974-4980.
13. Akashi, S.; Takio, K. Protein Sci. 2000, 9, 2497-2505.
14. Akashi, S.; Takio, K. J. Am. Soc. Mass Spectrom. 2001, 12, 1247-1253.
15. Anderegg, R. J.; Wagner, D. S.; Stevenson, C. L.; Borchardt, R. T. J. Am. Soc. Mass Spectrom. 1994, 5, 425-433.
16. Buijs, J.; Håkansson, K.; Hagman, C.; Håkansson, P.; Oscarsson, S. Rapid Commun. Mass Spectrom. 2000, 14, 1751-1756.
17. Demmers, J. A. A.; Rijkers, D. T. S.; Haverkamp, J.; Killian, J. A.; Heck, A. J. R. J. Am. Chem. Soc. 2002, 124, 11191-11198.
18. Deng, Y.; Pan, H.; Smith, D. L. J. Am. Chem. Soc. 1999, 121, 1966-1967.
19. Eyles, S. J.; Speir, J. P.; Kruppa, G. H.; Gierasch, L. M.; Kaltashov, I. A. J. Am. Chem. Soc. 2000, 122, 495-500.
20. Hoerner, J. K.; Xiao, H.; Dobo, A.; Kaltashov, I. A. J. Am. Chem. Soc. 2004, 126, 7709-7717.
21. Kim, M. Y.; Maier, C. S.; Reed, D. J.; Deinzer, M. L. J. Am. Chem. Soc. 2001, 123, 9860-9866.
22. Kim, M. Y.; Maier, C. S.; Reed, D. J.; Ho, P. S.; Deinzer, M. L. Biochemistry 2001, 40, 14413-14421.
23. Kraus, M.; Bienert, M.; Krause, E. Rapid Commun. in Mass Spectrom. 2003, 17, 222-228.
24. Kraus, M.; Janek, K.; Bienert, M.; Krause, E. Rapid Commun. Mass Spectrom. 2000, 14, 1094-1104.
25. Waring, A. J.; Mobley, P. W.; Gordon, L. M. Proteins 1998, (Suppl. 2), 38-49.
26. Yamada, N.; Suzuki, E.; Hirayama, K. Rapid Commun. Mass Spectrom. 2002, 16, 293-299.
27. Yan, X.; Zhang, H.; Watson, J.; Schimerlik, M. I.; Deinzer, M. L. Protein Sci. 2002, 11, 2113-2124.
28. Hoerner, J. K.; Xiao, H.; Kaltashov, I. A. Biochemistry 2005, 44, 11286-11294.
29. Kweon, H. K.; Håkansson, K. Analyst 2006, 131, 275-280.
30. Xiao, H.; Kaltashov, I. A. J. Am. Soc. Mass Spectrom. 2005, 16, 869-879.
31. Jørgensen, T. J. D.; Gårdsvoll, H.; Ploug, M.; Roepstorff, P. J. Am. Chem. Soc. 2005, 127, 2785-2793.
32. Jørgensen, T. J. D.; Bache, N.; Roepstorff, P.; Gårdsvoll, H.; Ploug, M. Mol. Cell Proteomics 2005, 4, 1910-1919.
33. Bulleigh, K.; Howard, A.; Do, T.; Wu, Q.; Anbalagan, V.; Stipdonk, M. V. Rapid Commun. Mass Spectrom. 2006, 20, 227-232.
34. Harrison, A. G.; Yalcin, T. Int. J. Mass Spectrom. 1997, 165, 339-347.
35. Johnson, R. S.; Krylov, D.; Walsh, K. A. J. Mass Spectrom. 1995, 30, 386-387.
36. Kenny, P. T.; Nomoto, K.; Orlando, R. Rapid Commun. Mass Spectrom. 1992, 6, 95-97.
37. Mueller, D. R.; Eckersley, M.; Richter, W. J. Org. Mass Spectrom. 1988, 23, 217-222.
38. Ferguson, P. L.; Pan, J.; Wilson, D. J.; Dempsey, B.; Lajoie, G.; Shilton, B.; Konermann, L. Anal. Chem. 2007, 79, 153-160.
39. McLafferty, F. W.; Guan, Z.; Haupts, U.; Wood, T. D.; Kelleher, N. L. J. Am. Chem. Soc. 1998, 120, 4732-4740.
40. See Figure 3 in ref 20.
41. Rist, W.; Mayer, M. P.; Andersen, J. S.; Roepstorff, P.; Jørgensen, T. J. D. Anal. Biochem. 2005, 342, 160-162.
42. Bai, Y.; Milne, J. S.; Mayne, L.; Englander, S. W. Proteins 1993, 17, 75-86.
43. Forsyth, W. R.; Robertson, A. D. J. Am. Chem. Soc. 1996, 118, 2694-2698.
44. Zubarev, R. A.; Kelleher, N. L.; McLafferty, F. W. J. Am. Chem. Soc. 1998, 120, 3265-3266.