Site-specific amide hydrogen exchange in melittin probed by electron capture dissociation Fourier transform ion cyclotron resonance mass spectrometry

Analyst

Volumn 131, Issue 2, 2006, Pages 275-280

  Kweon, Hye Kyong ^a   Håkansson, Kristina ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE; AMINO ACID; BEE VENOM; DEUTERIUM; HYDROGEN; LEUCINE; LYSINE; MELITTIN; METHANOL; POLYPEPTIDE; PROLINE;

ARTICLE; DISSOCIATION; ELECTRON CAPTURE DETECTION; ELECTRON CAPTURE DISSOCIATION; ELECTROSPRAY; ENERGY; FOURIER TRANSFORMATION; GAS; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

EID: 33645464785     PISSN: 00032654     EISSN: None     Source Type: Journal    
DOI: 10.1039/b511565e     Document Type: Article

References (53)

1. S. W. Englander T. R. Sosnick J. J. Englander L. Mayne Mechanisms and Uses of Hydrogen Exchange Curr. Opin. Struct. Biol. 1996 6 18 23
2. J. B. Fenn M. Mann C. K. Meng S. F. Wong C. M. Whitehouse Electrospray Ionization for Mass Spectrometry of Large Biomolecules Science 1989 246 64 71
3. A. Miranker C. V. Robinson S. E. Radford R. T. Aplin C. M. Dobson Detection of Transient Protein Folding Populations by Mass Spectrometry Science 1993 262 896 900
4. D. L. Smith Y. Deng Z. J. Zhang Probing the Non-Covalent Structure of Proteins by Amide Hydrogen Exchange and Mass Spectrometry J. Mass Spectrom. 1997 32 135 146
5. I. A. Kaltashov S. J. Eyles Crossing the Boundary to Study Protein Dynamics and Function: Combination of Amide Hydrogen Exchange in Solution and Ion Fragmentation in the Gas Phase J. Mass Spectrom. 2002 37 557 565
6. A. N. Hoofnagle K. A. Resing N. G. Ahn Protein Analysis by Hydrogen Exchange Mass Spectrometry Annu. Rev. Biophys. Biomol. Struct. 2003 32 1 25
7. L. Konermann D. A. Simmons Protein Folding Kinetics and Mechanisms Studied by Pulse Labeling and Mass Spectrometry Mass Spectrom. Rev. 2003 22 1 26
8. R. J. Anderegg D. S. Wagner C. L. Stevenson The Mass Spectrometry of Helical Unfolding in Peptides J. Am. Soc. Mass Spectrom. 1994 5 425 433
9. A. J. Waring P. W. Mobley L. M. Gordon Conformational Mapping of a Viral Fusion Peptide in Structure-Promoting Solvents using Circular Dichroism and Electrospray Mass Spectrometry Proteins 1998 Suppl. 2 38 49
10. S. Akashi K. Takio Characterization of the Interface Structure of Enzyme-Inhibitor Complex by using Hydrogen-Deuterium Exchange and Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Protein Sci. 2000 9 2497 2505
11. S. J. Eyles J. P. Speir G. H. Kruppa L. M. Gierasch I. A. Kaltashov Protein Conformational Stability Probed by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry J. Am. Chem. Soc. 2000 122 495 500
12. P. Tito E. J. Nettleton C. V. Robinson Dissecting the Hydrogen Exchange Properties of Insulin under Amyloid Fibril Forming Conditions: A Site-Specific Investigation by Mass Spectrometry J. Mol. Biol. 2000 303 267 278
13. M. Kraus M. Bienert E. Krause Hydrogen Exchange Studies on Alzheimer's Amyloid-Beta Peptides by Mass Spectrometry using Matrix-Assisted Laser Desorption/Ionization and Electrospray Ionization Rapid Commun. Mass Spectrom. 2003 17 222 228
14. P. Roepstorff J. Fohlman Proposal for a Common Nomenclature for Sequence Ions in Mass Spectra of Peptides Biomed. Mass Spectrom. 1984 11 601 601
15. Y. Z. Deng H. Pan D. L. Smith Selective Isotopic Labeling Demonstrates that Hydrogen Exchange at Individual Peptide Amide Linkages can be Determined by Collision-Induced Dissociation Mass Spectrometry J. Am. Chem. Soc. 1999 121 1966 1967
16. M. Y. Kim C. S. Maier D. J. Reed M. L. Deinzer Site-Specific Amide Hydrogen/Deuterium Exchange in E. coli Thioredoxins Measured by Electrospray Ionization Mass Spectrometry J. Am. Chem. Soc. 2001 123 9860 9866
17. R. S. Johnson D. Krylov K. A. Walsh Proton Mobility within Electrosprayed Peptide Ions J. Mass Spectrom. 1995 30 386 387
18. F. W. McLafferty Z. Q. Guan U. Haupts T. D. Wood N. L. Kelleher Gaseous Conformational Structures of Cytochrome c J. Am. Chem. Soc. 1998 120 4732 4740
19. J. Buijs C. Hagman K. Hakansson J.-H. Richter P. Hakansson S. Oscarsson Inter- and Intra-molecular Migration of Peptide Amide Hydrogens during Electrospray Ionization J. Am. Soc. Mass Spectrom. 2001 12 410 419
20. J. A. A. Demmers D. T. S. Rijkers J. Haverkamp J. A. Killian A. J. R. Heck Factors Affecting Gas-Phase Deuterium Scrambling in Peptide Ions and their Implications for Protein Structure Determination J. Am. Chem. Soc. 2002 124 11191 11198
21. C. Hagman P. Hakansson J. Buijs K. Hakansson Inter-Molecular Migration During Collisional Activation Monitored by Hydrogen/Deuterium Exchange FT-ICR Tandem Mass Spectrometry J. Am. Soc. Mass Spectrom. 2004 15 640 647
22. J. K. Hoerner H. Xiao A. Dobo I. A. Kaltashov Is there Hydrogen Scrambling in the Gas Phase? Energetic and Structural Determinants of Proton Mobility within Protein Ions J. Am. Chem. Soc. 2004 126 7709 7717
23. T. J. D. Jorgensen H. Gardsvoll M. Ploug P. Roepstorff Intramolecular Migration of Amide Hydrogens in Protonated Peptides upon Collisional Activation J. Am. Chem. Soc. 2005 127 2785 2793
24. F. W. McLafferty D. M. Horn K. Breuker Y. Ge M. A. Lewis B. Cerda R. A. Zubarev B. K. Carpenter Electron Capture Dissociation of Gaseous Multiply Charged Ions by Fourier Transform Ion Cyclotron Resonance J. Am. Soc. Mass Spectrom. 2001 12 245 249
25. R. A. Zubarev Reactions of Polypeptide Ions with Electrons in the Gas Phase Mass Spectrom. Rev. 2003 22 57 77
26. R. A. Zubarev Electron Capture Dissociation Tandem Mass Spectrometry Curr. Opin. Biotechnol. 2004 15 12 16
27. H. J. Cooper K. Hakansson A. G. Marshall The Role of Electron Capture Dissociation in Biomolecular Analysis Mass Spectrom. Rev. 2005 24 201 222
28. R. A. Zubarev K. F. Haselmann B. Budnik F. Kjeldsen F. Jensen Towards an Understanding of the Mechanism of Electron Capture Dissociation: A Historical Perspective and Modern Ideas Eur. Mass Spectrom. 2002 8 337 349
29. F. Turecek N-C-alpha Bond Dissociation Energies and Kinetics in Amide and Peptide Radicals. Is the Dissociation a Non-Ergodic Process? J. Am. Chem. Soc. 2003 125 5954 5963
30. V. Bakken T. Helgaker E. Uggerud Models of Fragmentations Induced by Electron Attachment to Protonated Peptides Eur. J. Mass Spectrom. 2004 10 625 638
31. M. Sobczyk W. Anusiewicz J. Berdys-Kochanska A. Sawicka P. Skurski J. Simons Coulomb-Assisted Dissociative Electron Attachment: Application to a Model Peptide J. Phys. Chem. A 2005 109 250 258
32. R. A. Zubarev N. L. Kelleher F. W. McLafferty Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process J. Am. Chem. Soc. 1998 120 3265 3266
33. R. A. Zubarev N. A. Kruger E. K. Fridriksson M. A. Lewis D. M. Horn B. K. Carpenter F. W. McLafferty Electron Capture Dissociation of Gaseous Multiply-charged Proteins is Favored at Disulfide Bonds and Other Sites of High Hydrogen Atom Affinity J. Am. Chem. Soc. 1999 121 2857 2862
34. E. A. Syrstad F. Turecek Toward a General Mechanism of Electron Capture Dissociation J. Am. Soc. Mass Spectrom. 2005 16 208 224
35. N. Leymarie C. E. Costello P. B. O'Connor Electron Capture Dissociation Initiates a Free Radical Reaction Cascade J. Am. Chem. Soc. 2003 125 8949 8958
36. J. P. Charlebois S. M. Patrie N. L. Kelleher Electron Capture Dissociation and C-13, N-15 Depletion for Deuterium Localization in Intact Proteins after Solution-Phase Exchange Anal. Chem. 2003 75 3263 3266
37. R. Bazzo M. J. Tappin A. Pastore T. S. Harvey J. A. Carver I. D. Campbell The Structure of Melittin - A H-1 NMR Study in Methanol J. Biochem. 1988 173 139 146
38. C. E. Dempsey pH Dependence of Hydrogen Exchange from Backbone Amides of Melittin in Methanol Biochemistry 1988 27 6893 6901
39. Y. W. Bai J. S. Milne L. Mayne S. W. Englander Primary Structure Effects on Peptide Group Hydrogen Exchange Proteins 1993 17 75 86
40. M. R. Emmett R. M. Caprioli Micro-Electrospray Mass Spectrometry: Ultra-High-Sensitivity Analysis of Peptides and Proteins J. Am. Soc. Mass Spectrom. 1994 5 605 613
41. J. P. Quinn, M. R. Emmett and A. G. Marshall, presented at the 46th ASMS Conference on Mass Spectrometry and Allied Topics, Orlando, FL, 1998
42. K. Hakansson M. J. Chalmers J. P. Quinn M. A. McFarland C. L. Hendrickson A. G. Marshall Combined Electron Capture and Infrared Multiphoton Dissociation for Multistage MS/MS in an FT-ICR Mass Spectrometer Anal. Chem. 2003 75 3256 3262
43. M. E. Belov E. N. Nikolaev G. A. Anderson H. R. Udseth T. P. Conrads T. D. Veenstra C. D. Masselon M. V. Gorshkov R. D. Smith Design and Performance of an ESI Interface for Selective External Ion Accumulation Coupled to a Fourier Transform Ion Cyclotron Mass Spectrometer Anal. Chem. 2001 73 253 261
44. M. A. McFarland C. L. Hendrickson A. G. Marshall Ion " Threshing": Collisionally Activated Dissociation in an External Octopole Ion Trap by Oscillation of an Axial Electric Potential Gradient Anal. Chem. 2004 76 1545 1549
45. B. E. Wilcox C. L. Hendrickson A. G. Marshall Improved Ion Extraction from a Linear Octopole Ion Trap: SIMION Analysis and Experimental Demonstration J. Am. Soc. Mass Spectrom. 2002 13 1304 1312
46. S. C. Beu D. A. Laude, Jr. Open Trapped Ion Cell Geometries for FT/ICR/MS Int. J. Mass Spectrom. Ion Processes 1992 112 215 230
47. M. W. Senko J. D. Canterbury S. Guan A. G. Marshall A High-Performance Modular Data System for FT-ICR Mass Spectrometry Rapid Commun. Mass Spectrom. 1996 10 1839 1844
48. G. T. Blakney, C. L. Hendrickson, M. R. Emmett and A. G. Marshall, presented at the 50th ASMS Conference on Mass Spectrometry and Allied Topics, Orlando, FL, June 2-6, 2002
49. E. B. Ledford, Jr. D. L. Rempel M. L. Gross Space Charge Effects in Fourier Transform Mass Spectrometry Mass Calibration Anal. Chem. 1984 56 2744 2748
50. D. M. Horn Y. Ge F. W. McLafferty Activated Ion Electron Capture Dissociation for Mass Spectral Sequencing of Larger (42 kDa) Proteins Anal. Chem. 2000 72 4778 4784
51. J. Buijs K. Hakansson C. Hagman P. Hakansson S. Oscarsson A New Method for the Accurate Determination of the Isotopic State of Single Amide Hydrogens within Peptides using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Rapid Commun. Mass Spectrom. 2000 14 1751 1756
52. I. A. Kaltashov C. Fenselau Stability of Secondary Structural Elements in a Solvent-Free Environment: The Alpha Helix Proteins Struct. Funct. Genet. 1997 27 165 170
53. G. D. Henry B. D. Sykes Determination of the Rotational Dynamics and pH Dependence of the Hydrogen Exchange Rates of the Argininine Guanidino Group using NMR Spectroscopy J. Biomol. NMR 1995 6 59 66