Identification and localization of slow, natural, cooperative unfolding in the hematopoietic cell kinase SH3 domain by amide hydrogen exchange and mass spectrometry

Biochemistry

Volumn 36, Issue 47, 1997, Pages 14384-14391

  Engen, John R ^a   Smithgall, Thomas E ^b   Gmeiner, William H ^b   Smith, David L ^a,b  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ENZYME ACTIVITY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MAMMAL; MASS SPECTROMETRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN STRUCTURE; X RAY CRYSTALLOGRAPHY;

AMIDES; AMINO ACID SEQUENCE; ANIMALS; CHICKENS; CLONING, MOLECULAR; ESCHERICHIA COLI; GENE PRODUCTS, NEF; HIV; HUMANS; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPSIN A; PEPTIDE FRAGMENTS; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN-TYROSINE KINASES; PROTO-ONCOGENE PROTEINS; PROTO-ONCOGENE PROTEINS C-HCK; RECOMBINANT PROTEINS; SRC HOMOLOGY DOMAINS;

EID: 0030696119     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi971635m     Document Type: Article

References (58)

1. Nimmesgern, E., Fox, T., Fleming, M. A., and Thomson, J. A. (1996) J. Biol. Chem. 271, 19421-19427.
2. Creighton, T. E. (1992) in Protein Folding (Creighton, T. E., Ed.) W. H. Freeman and Co., New York.
3. Wilson, I. A., and Stanfield, R. L. (1994) Curr. Opin. Struct. Biol. 4, 857-867.
4. Spolar, R. S., and Record, M. T., Jr. (1994) Science 263, 777-784.
5. Kriwacki, R. W., Hengst, L., Tennent, L., Reed, S. I., and Wright, P. E. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 11504-11509.
6. Shen, F., Triezenberg, S. J., Hensley, P., Porter, D., and Knutson, J. (1996) J. Biol. Chem. 271, 4827-4837.
7. Alexandrescu, A. T., Abeygunawardana, C., and Shortle, D. (1994) Biochemistry 33, 1063-1072.
8. Pawson, T. (1995) Nature 373, 573-580.
9. Sicheri, F., Moarefi, I., and Kuriyan, J. (1997) Nature 385, 602-609.
10. Xu, W., Harrison, S. C., and Eck, M. J. (1997) Nature 385, 595-602.
11. Lee, C.-H., Leung, B., Lemmon, M. A., Zheng, J., Cowburn, D., Kuriyan, J., and Saksela, K. (1995) EMBO J. 14, 5006-5015.
12. Moarefi, I., LaFevre-Bernt, M., Sicheri, F., Huse, M., Lee, C.-H., Kuriyan, J., and Miller, W. T. (1997) Nature 385, 650-653.
13. Briggs, S. D., Sharkey, M., Stevenson, M., and Smithgall, T. E. (1997) J. Biol. Chem. 272, 17899-17902.
14. Chen, Y.-J., Lin, S.-C., Tzeng, S.-R., Patel, H. V., Lyu, P.-C., and Cheng, J.-W. (1996) Proteins: Struct. Funct. Genet. 26, 465-471.
15. Viguera, A. R., Martinez, J. C., Filimonov, V. V., Mateo, P. L., and Serrano, L. (1994) Biochemistry 33, 2142-2150.
16. Lim, W. A., Fox, R. O., and Richards, F. M. (1994) Protein Sci. 3, 1261-1266.
17. Privalov, P. L. (1979) Adv. Protein Chem. 33, 167-241.
18. Zhang, O., and Forman-Kay, J. D. (1995) Biochemistry 34, 6784-6794.
19. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1995) Biochemistry 34, 868-878.
20. Goudreau, N., Cornille, F., Duchesne, M., Parker, F., Tocque, B., Garbay, C., and Roques, B. P. (1994) Nature Struct. Biol. 1, 898-907.
21. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1997) Biochemistry 36, 2390-2402.
22. Zhang, O., and Forman-Kay, J. D. (1997) Biochemistry 36, 3959-3970.
23. Morton, C. J., Pugh, D. J. R., Brown, E. L. J., Kahmann, J. D., Renzoni, D. A. C., and Campbell, I. D. (1996) Structure 4, 705-714.
24. Hiroaki, H., Klaus, W., and Senn, H. (1996) J. Biomol. NMR 8, 105-122.
25. Gosser, Y. Q., Zheng, J., Overduin, M., Mayer, B. J., and Cowburn, D. (1995) Structure 3, 1075-1086.
26. Yu, H., Rosen, M. K., and Schreiber, S. L. (1993) FEBS Lett. 324, 87-92.
27. van Aalten, D. M. F., Amadei, A., Bywater, R., Findlay, J. B. C., Berendsen, H. J. C., Sander, C., and Stouten, P. F. W. (1996) Biophys. J. 70, 684-692.
28. Borchert, T. V., Mathieu, M., Zeelen, J. P., Courtneidge, S. A., and Wierenga, R. K. (1994) FEBS Lett. 341, 79-85.
29. Musacchio, A., Saraste, M., and Wilmanns, M. (1994) Nature Struct. Biol. 1, 546-551.
30. Booker, G. W., Gout, I., Downing, A. K., Driscoll, P. C., Boyd, J., Waterfield, M. D., and Campbell, I. D. (1993) Cell 73, 813-822.
31. Loh, S. N., Rohl, C. A., Kiethaber, T., and Baldwin, R. L. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 1982-1987.
32. Bai, Y., Sosnick, T. R., Mayne, L., and Englander, S. W. (1995) Science 269, 192-197.
33. Mayo, S. L., and Baldwin, R. L. (1993) Science 262, 873-876.
34. Kim, K.-S., and Woodward, C. (1993) Biochemists 32, 9609-9613.
35. Thévenon-Emeric, G., Kozlowski, J., Zhang, Z., and Smith, D. L. (1992) Anal. Chem. 64, 2456-2458.
36. Katta, V., and Chait, B. T. (1991) Rapid Commun. Mass Spectrom. 5, 214-217.
37. Johnson, R. S., and Walsh, K. A. (1994) Protein Sci. 3, 2411-2418.
38. Zhang, Z., and Smith, D. L. (1993) Protein Sci. 2, 522-531.
39. Smith, D. L., Deng, Y., and Zhang, Z. (1997) J. Mass Spectrom. 32, 135-146.
40. Miranker, A., Robinson, C. V., Radford, S. E., Aplin, R. T., and Dobson, C. M. (1993) Science 262, 896-900.
41. Zhang, Z., Post, C. B., and Smith, D. L. (1996) Biochemistry 35, 779-791.
42. Dharmasiri, K., and Smith, D. L. (1996) Anal. Chem. 68, 2340-2344.
43. Bai, Y., Milne, J. S., Mayne, L., and Englander, S. W. (1993) Proteins: Struct. Funct. Genet. 17, 75-86.
44. Zhou, Z., and Smith, D. L. (1990) J. Protein Chem. 9, 523-532.
45. Biemann, K. (1990) Methods Enzymol. 193, 455-479.
46. Caprioli, R. M., and Fan, T. (1986) Anal. Biochem. 154, 596-603.
47. Smith, J. B., Sun, Y., Smith, D. L., and Green, B. (1992) Protein Sci. 1, 601-608.
48. Sancho, J., Meiering, E. M., and Fersht, A. R. (1991) J. Mol. Biol. 221, 1007-1014.
49. Woodward, C., Simon, I., and Tuchsen, E. (1982) Mol. Cell. Biochem. 48, 135-160.
50. Lee, C.-H., Saksela, K., Mirza, U. A., Chait, B. T., and Kuriyan, J. (1996) Cell 85, 931-942.
51. Bai, Y. W., Milne, J. S., Mayne, L., and Englander, S. W. (1994) Proteins: Struct. Funct. Genet. 20, 4-14.
52. Schlessinger, J. (1993) Trends. Biochem. Sci. 18, 273-275.
53. Wittekind, M., Mapelli, C., Farmer, B. T., II, Suen, K.-L., Goldfarb, V., Tsao, J., Lavoie, T., Barbacid, M., Meyers, C. A., and Mueller, L. (1994) Biochemistry 33, 13531-13539.
54. Terasawa, H., Kohda, D., Hatanaka, H., Tsuchiya, S., Ogura, K., Nagata, K., Ishii, S., Mandiyan, V., Ullrich, A., Schlessinger, J., and Inagaki, F. (1994) Nature Struct. Biol. 1, 891-898.
55. Gmeiner, W. H. (unpublished results).
56. Zhang, Z., and Smithm D. L. (1996) Protein Sci. 5, 1282-1289.
57. Liu, Y., and Smith, D. L. (1994) J. Am. Soc. Mass Spectrom. 5, 19-28.
58. Erpel, T., Superti-Furga, G., and Courtneidge, S. A. (1995) EMBO J. 14, 963-975.