Isolation of flagellated bacteria implicated in Crohn's disease

Inflammatory Bowel Diseases

Volumn 13, Issue 10, 2007, Pages 1191-1201

  Duck, L Wayne ^a   Walter, Mark R ^b   Novak, Jan ^b   Kelly, Denise ^c   Tomasi, Maurizio ^d   Cong, Yingzi ^a   Elson, Charles O ^a  

^a University of Alabama at Birmingham   (United States)

^b University of Alabama at Birmingham   (United States)

^c ROWETT RESEARCH INSTITUTE   (United Kingdom)

^d ISTITUTO SUPERIORE DI SANITÀ   (Italy)

Author keywords

Antibody; Bacteria; Flagellin; Microbiota; Phylogeny

Indexed keywords

FLAGELLIN; IMMUNOGLOBULIN G; RIBOSOME DNA;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIUM CULTURE; BACTERIUM ISOLATION; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CLUSTER ANALYSIS; COLITIS; CROHN DISEASE; DNA SEQUENCE; FIRMICUTES; GLYCOSYLATION; HUMAN; IMMUNE RESPONSE; IMMUNOGLOBULIN BLOOD LEVEL; LACHNOSPIRACEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SALMONELLA; UNINDEXED SEQUENCE;

ANIMALS; ANTIGENS, BACTERIAL; BACTERIA; BLOTTING, WESTERN; CECUM; CELLS, CULTURED; CLONING, MOLECULAR; CROHN DISEASE; DNA, BACTERIAL; FEMALE; FLAGELLIN; HUMANS; INTESTINAL MUCOSA; MICE; MICE, INBRED C3H; PHYLOGENY; POLYMERASE CHAIN REACTION; RABBITS; SEQUENCE ANALYSIS, DNA;

EID: 35349019357     PISSN: 10780998     EISSN: 15364844     Source Type: Journal    
DOI: 10.1002/ibd.20237     Document Type: Article

References (42)

1. Ley RE, Peterson DA, Gordon JI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006;124:837-848.
2. Elson CO, Cong Y, McCracken VJ, et al. Experimental models of inflammatory bowel disease reveal innate, adaptive, and regulatory mechanisms of host dialogue with the microbiota. Immunol Rev. 2005;206:260-276.
3. Lorenz RG, McCracken VJ, Elson CO. Animal models of intestinal inflammation: ineffective communication between coalition members. Springer Semin Immunopathol. 2005;27:233-247.
4. Girardin SE, Boneca IG, Viala J, et al. Nod2 is a general sensor of peptidoglycan through muramyl dipeptide (MDP) detection. J Biol Chem. 2003;278:8869-8872.
5. Inohara N, Ogura Y, Fontalba A, et al. Host recognition of bacterial muramyl dipeptide mediated through NOD2: implications for Crohn's disease. J Biol Chem. 2003;278:5509-5512.
6. Mow WS, Vasiliauskas EA, Lin YC, et al. Association of antibody responses to microbial antigens and complications of small bowel Crohn's disease. Gastroenterology. 2004;126:414-424.
7. Brandwein SL, McCabe RP, Cong Y, et al. Spontaneously colitic C3H/HeJBir mice demonstrate selective antibody reactivity to antigens of the enteric bacterial flora. J Immunol. 1997;159:44-52.
8. Lodes MJ, Cong Y, Elson CO, et al. Bacterial flagellin is a dominant antigen in Crohn disease. J Clin Invest. 2004;113:1296-1306.
9. Collins MD, Lawson PA, Willems A, et al. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol. 1994;44:812-826.
10. Eckburg PB, Bik EM, Bernstein CN, et al. Diversity of the human intestinal microbial flora. Science. 2005;308:1635-1638.
11. Leser TD, Amenuvor JZ, Jensen TK, et al. Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol. 2002;68:673-690.
12. Pryde SE, Richardson AJ, Stewart CS, et al. Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig. Appl Environ Microbiol. 1999;65:5372-5377.
13. Wang X, Heazlewood SP, Krause DO, et al. Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis. J Appl Microbiol. 2003;95:508-520.
14. Bik EM, Eckburg PB, Gill SR, et al. Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci U S A. 2006;103:732-737.
15. Sundberg JP, Elson CO, Bedigian H, et al. Spontaneous, heritable colitis in a new substrain of C3H/HeJ mice. Gastroenterology. 1994;107:1726-1735.
16. Rice BE, Lamichhane C, Joseph SW, et al. Development of a rapid and specific colony-lift immunoassay for detection and enumeration of Campylobacter jejuni, C. coli, and C. lari. Clin Diagn Lab Immunol. 1996;3:669-677.
17. Weisburg WG, Barns SM, Pelletier DA, et al. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol. 1991;173:697-703.
18. Muyzer G, de Waal EC, Uitterlinden AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol. 1993;59:695-700.
19. Altschul SF, Gish W, Miller W, et al. Basic local alignment search tool. J Mol Biol. 1990;215:403-410.
20. Cole JR, Chai B, Farris RJ, et al. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. 2005;33:D294-D296.
21. Chenna R, Sugawara H, Koike T, et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003;31:3771-3774.
22. Greis KD, Hayes BK, Comer FI, et al. Selective detection and site analysis of O-GlcNAc-modified glycopeptides by β-elimination and tandem electrospray mass spectrometry. Anal Biochem. 1996;234:38-49.
23. Arnold F, Bedouet L, Batina P, et al. Biochemical and immunological analyses of the flagellin of Clostridium tyrobutyricum ATCC 25755. Microbiol Immunol. 1998;42:23-31.
24. Bedouet L, Arnold F, Robreau G, et al. Evidence for an heterogeneous glycosylation of the Clostridium tyrobutyricum ATCC 25755 flagellin. Microbios. 1998;94:183-192.
25. Barcenilla A, Pryde SE, Martin JC, et al. Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol. 2000;66:1654-1661.
26. Duncan SH, Hold GL, Barcenilla A, et al. Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces. Int J Syst Evol Microbiol. 2002;52:1615-1620.
27. Louis P, Duncan SH, McCrae SI, et al. Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol. 2004;186:2099-2106.
28. Samatey FA, Imada K, Nagashima S, et al. Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling. Nature. 2001:410:331-337.
29. Yonekura K, Maki-Yonekura S, Namba K. Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy. Nature. 2003;424:643-650.
30. Sali A, Blundell TL. Comparative protein modeling by satisfaction of spatial restraints. J Mol Biol. 1993;234:779-815.
31. Smith KD, Andersen-Nissen E, Hayashi F, et al. Toll-like receptor 5 recognizes a conserved site on flagellin required for protofilament formation and bacterial motility. Nat Immunol. 2003;4:1247-1253.
32. Yoshioka K, Aizawa S, Yamaguchi S. Flagellar filament structure and cell motility of Salmonella typhimurium mutants lacking part of the outer domain of flagellin. J Bacteriol. 1995;177:1090-1093.
33. Mimori-Kiyosue Y, Yamashita I, Fujiyoshi Y, et al. Role of the outer-most subdomain of Salmonella flagellin in the filament structure revealed by electron cryomicroscopy. J Mol Biol. 1998;284:521-530.
34. Backhed F, Ley RE, Sonnenburg JL, et al. Host-bacterial mutualism in the human intestine. Science. 2005;307:1915-1920.
35. Fukunaga M, Okada K, Nakao M, et al. Phylogenetic analysis of Borrelia species based on flagellin gene sequences and its application for molecular typing of Lyme disease borreliae. Int J Syst Bacteriol. 1996;46:898-905.
36. Smith KD, Andersen-Nissen E, Hayashi F, et al. Toll-like receptor 5 recognizes a conserved site on flagellin required for protofilament formation and bacterial motility. Nat Immunol. 2003;4:1247-1253.
37. Andersen-Nissen E, Smith KD, Strober SL, et al. Evasion of Toll-like receptor 5 by flagellated bacteria. Proc Natl Acad Sci U S A. 2005;102:9247-9252.
38. Konrad A, Cong Y, Duck W, et al. Tight mucosal compartmentation of the murine immune response to antigens of the enteric microbiota. Gastroenterology. 2006:130:2050-2059.
39. Targan SR, Landers CJ, Yang H, et al. Antibodies to CBir1 flagellin define a unique response that is associated independently with complicated Crohn's disease. Gastroenterology. 2005;128:2020-2028.
40. Beckwith J, Cong Y, Sundberg JP, et al. Cdcs1, a major colitogenic locus in mice, regulates innate and adaptive immune response to enteric bacterial antigens. Gastroenterology. 2005;129:1473-1484.
41. Taylor KD, Yang H, Mei L, et al. Genes regulating the expression of antibody to CBir1 flagellin in humans are located within a syntenic region to the major mouse colitogenic locus Cdcs1. Gastroenterology. 2006;130:A64.
42. Gewirtz AT, Vijay-Kumar M, Brant SR, et al. Dominant-negative TLR5 polymorphism reduces adaptive immune response to flagellin and negatively associates with Crohn's disease. Am J Physiol Gastrointest Liver Physiol. 2006;290:G1157-1163.