메뉴 건너뛰기




Volumn 65, Issue 12, 1999, Pages 5372-5377

Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATION; DNA SEQUENCE; INTESTINE; LACTOBACILLUS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; STREPTOCOCCUS; SWINE; TISSUE DISTRIBUTION;

EID: 0032759329     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.12.5372-5377.1999     Document Type: Article
Times cited : (146)

References (47)
  • 1
    • 0018406694 scopus 로고
    • Comparison of bacterial populations of the pig cecum and colon based upon enumeration with specific energy sources
    • Allison, M. J., I. M. Robinson, J. A. Bucklin, and G. D. Booth. 1979. Comparison of bacterial populations of the pig cecum and colon based upon enumeration with specific energy sources. Appl. Environ. Microbiol. 37: 1142-1151.
    • (1979) Appl. Environ. Microbiol. , vol.37 , pp. 1142-1151
    • Allison, M.J.1    Robinson, I.M.2    Bucklin, J.A.3    Booth, G.D.4
  • 2
    • 0030979942 scopus 로고
    • Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
    • Avgustin, G., F. Wright, and H. J. Flint. 1994. Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen. Int. J. Syst. Bacteriol. 47:284-288.
    • (1994) Int. J. Syst. Bacteriol. , vol.47 , pp. 284-288
    • Avgustin, G.1    Wright, F.2    Flint, H.J.3
  • 3
    • 0030041078 scopus 로고    scopus 로고
    • Econutrition and health maintenance - A new concept to prevent GI inflammation, ulceration and sepsis
    • Bengmark, S. 1996. Econutrition and health maintenance - a new concept to prevent GI inflammation, ulceration and sepsis. Clin. Nutr. 15:1-10.
    • (1996) Clin. Nutr. , vol.15 , pp. 1-10
    • Bengmark, S.1
  • 4
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli
    • Brosius, J., M. L. Palmer, P. J. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.F.4
  • 5
    • 0015464618 scopus 로고
    • Commentary on the Hungate technique for cultivation of anaerobic bacteria
    • Bryant, M. P. 1972. Commentary on the Hungate technique for cultivation of anaerobic bacteria. Am. J. Clin. Nutr. 25:1324-1328.
    • (1972) Am. J. Clin. Nutr. , vol.25 , pp. 1324-1328
    • Bryant, M.P.1
  • 7
    • 0020681426 scopus 로고
    • Bacterial populations associated with different regions of the human colon wall
    • Croucher, S. C., A. P. Houston, C. E. Bayliss, and R. J. Turner. 1983. Bacterial populations associated with different regions of the human colon wall. Appl. Environ. Microbiol. 45:1025-1033.
    • (1983) Appl. Environ. Microbiol. , vol.45 , pp. 1025-1033
    • Croucher, S.C.1    Houston, A.P.2    Bayliss, C.E.3    Turner, R.J.4
  • 8
    • 0031132109 scopus 로고    scopus 로고
    • Colonic microflora: Nutrition and health
    • Cummings, J. H., and G. T. MacFarlane. 1997. Colonic microflora: nutrition and health. Nutrition 13:476-478.
    • (1997) Nutrition , vol.13 , pp. 476-478
    • Cummings, J.H.1    MacFarlane, G.T.2
  • 9
    • 0030969814 scopus 로고    scopus 로고
    • Role of intestinal bacteria in nutrient metabolism
    • Cummings, J. H., and G. T. MacFarlane. 1997. Role of intestinal bacteria in nutrient metabolism. Clin. Nutr. 16:3-11.
    • (1997) Clin. Nutr. , vol.16 , pp. 3-11
    • Cummings, J.H.1    MacFarlane, G.T.2
  • 11
    • 0031714906 scopus 로고    scopus 로고
    • Changes in bacterial populations of pigs fed different sources of dietary fibre, and the development of swine dysentery after experimental infection
    • Durmic, Z., J. R. Pethick, and D. J. Hampson. 1998. Changes in bacterial populations of pigs fed different sources of dietary fibre, and the development of swine dysentery after experimental infection. J. Appl. Microbiol. 85: 574-582.
    • (1998) J. Appl. Microbiol. , vol.85 , pp. 574-582
    • Durmic, Z.1    Pethick, J.R.2    Hampson, D.J.3
  • 13
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNa genes from a mixture of bacterial species
    • Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 14
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (version 3.2)
    • Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 16
    • 0025778965 scopus 로고
    • Rapid 16S ribosomal DNa sequencing from a single colony without DNa extraction or purification
    • Frothingham, R., R. L. Allen, and K. H. Wilson. 1991. Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification. BioTechniques 11:40-44.
    • (1991) BioTechniques , vol.11 , pp. 40-44
    • Frothingham, R.1    Allen, R.L.2    Wilson, K.H.3
  • 17
    • 0001294391 scopus 로고    scopus 로고
    • Immunological aspects of host/microbiota interactions at the intestinal epithelium
    • R. I. Mackie, B. A. White, and R. E. Isaacson (ed.), Chapman and Hall, New York, N.Y.
    • Gaskins, H. R. 1996. Immunological aspects of host/microbiota interactions at the intestinal epithelium, p. 537-587. In R. I. Mackie, B. A. White, and R. E. Isaacson (ed.), Gastrointestinal microbiology, vol. 2. Chapman and Hall, New York, N.Y.
    • (1996) Gastrointestinal Microbiology , vol.2 , pp. 537-587
    • Gaskins, H.R.1
  • 18
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity search
    • Gish, W., and D. J. States. 1993. Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-272.
    • (1993) Nat. Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.J.2
  • 19
    • 0026605537 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 20
    • 77956851336 scopus 로고
    • Rumen bacteria
    • Hobson, P. N. 1969. Rumen bacteria. Methods Microbiol. 3B: 133-149.
    • (1969) Methods Microbiol. , vol.3 B , pp. 133-149
    • Hobson, P.N.1
  • 21
    • 0000717077 scopus 로고
    • Probiotics for pigs
    • R. Fuller (ed.), Chapman and Hall, London, United Kingdom
    • Jonsson, E., and P. L. Conway. 1992. Probiotics for pigs, p. 260-316. In R. Fuller (ed.), Probiotics. Chapman and Hall, London, United Kingdom.
    • (1992) Probiotics , pp. 260-316
    • Jonsson, E.1    Conway, P.L.2
  • 22
    • 0030894624 scopus 로고    scopus 로고
    • Novel group within the kingdom Crenarchaeota from boreal forest soil
    • Jurgens, G., K. Linstrom, and A. Saano. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-805.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 803-805
    • Jurgens, G.1    Linstrom, K.2    Saano, A.3
  • 23
    • 0000219186 scopus 로고
    • AL
    • P. H. A. Sneath, N. S. Mair, and M. E. Sharpe (ed.), Williams and Wilkins, Baltimore, Md.
    • AL, p. 1209-1234. In P. H. A. Sneath, N. S. Mair, and M. E. Sharpe (ed.), Bergey's manual of systematic bacteriology, vol. 2. Williams and Wilkins, Baltimore, Md.
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1209-1234
    • Kandler, O.1    Weiss, N.2
  • 24
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 25
    • 0032525167 scopus 로고    scopus 로고
    • A molecular view of microbial diversity in a dynamic landfill in Québec
    • Lloyd-Jones, G., and P. C. K. Lau. 1998. A molecular view of microbial diversity in a dynamic landfill in Québec. FEMS Microbiol. Lett. 172:219-226.
    • (1998) FEMS Microbiol. Lett. , vol.172 , pp. 219-226
    • Lloyd-Jones, G.1    Lau, P.C.K.2
  • 29
    • 0016167941 scopus 로고
    • Human fecal flora: The normal flora of 20 Japanese-Hawaiians
    • Moore, W. E. C., and L. V. Holdeman. 1974. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Environ. Microbiol. 27:961-979.
    • (1974) Appl. Environ. Microbiol. , vol.27 , pp. 961-979
    • Moore, W.E.C.1    Holdeman, L.V.2
  • 31
    • 0029084396 scopus 로고
    • Intestinal floras of populations that have a high risk of colon cancer
    • Moore, W. E. C., and L. H. Moore. 1995. Intestinal floras of populations that have a high risk of colon cancer. Appl. Environ. Microbiol. 61:3202-3207.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3202-3207
    • Moore, W.E.C.1    Moore, L.H.2
  • 32
    • 0024311277 scopus 로고
    • Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography
    • Richardson, A. J., A. G. Calder, C. S. Stewart, and A. Smith. 1989. Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography. Lett. Appl. Microbiol. 9: 5-8.
    • (1989) Lett. Appl. Microbiol. , vol.9 , pp. 5-8
    • Richardson, A.J.1    Calder, A.G.2    Stewart, C.S.3    Smith, A.4
  • 34
    • 0021719465 scopus 로고
    • Characterization of predominant bacteria from the colons of normal and dysenteric pigs
    • Robinson, I. M., S. C. Whipp, J. A. Bucklin, and M. J. Allison. 1984. Characterization of predominant bacteria from the colons of normal and dysenteric pigs. Appl. Environ. Microbiol. 48:964-969.
    • (1984) Appl. Environ. Microbiol. , vol.48 , pp. 964-969
    • Robinson, I.M.1    Whipp, S.C.2    Bucklin, J.A.3    Allison, M.J.4
  • 35
    • 0023686938 scopus 로고
    • Streptococcus intestinalis, a new species from the colons and feces of pigs
    • Robinson, I. M., J. M. Stromley, V. H. Varel, and E. P. Cato. 1988. Streptococcus intestinalis, a new species from the colons and feces of pigs. Int. J. Syst. Bacteriol. 38:245-248.
    • (1988) Int. J. Syst. Bacteriol. , vol.38 , pp. 245-248
    • Robinson, I.M.1    Stromley, J.M.2    Varel, V.H.3    Cato, E.P.4
  • 36
    • 0018342493 scopus 로고
    • Types and distribution of anaerobic bacteria in the large intestine of pigs
    • Russell, E. G. 1979. Types and distribution of anaerobic bacteria in the large intestine of pigs. Appl. Environ. Microbiol. 37:187-193.
    • (1979) Appl. Environ. Microbiol. , vol.37 , pp. 187-193
    • Russell, E.G.1
  • 37
    • 0023375195 scopus 로고
    • The neighbor joining method: A new method for constructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 38
    • 0017596234 scopus 로고
    • Isolation and identification of fecal bacteria from adult swine
    • Salanitro, J. P., I. G. Blake, and P. A. Muirhead. 1977. Isolation and identification of fecal bacteria from adult swine. Appl. Environ. Microbiol. 33: 79-84.
    • (1977) Appl. Environ. Microbiol. , vol.33 , pp. 79-84
    • Salanitro, J.P.1    Blake, I.G.2    Muirhead, P.A.3
  • 39
    • 0028028182 scopus 로고
    • A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species identification in bacteriology
    • Stackebrandt, E., and B. M. Grobel. 1994. A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species identification in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Grobel, B.M.2
  • 40
    • 0024005650 scopus 로고
    • Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
    • Stahl, D. A., B. Flesher, H. R. Mansfield, and L. Montgomery. 1988. Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54:1079-1084.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 41
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovanni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovanni, S.J.2
  • 42
    • 0029662670 scopus 로고    scopus 로고
    • Characterization of 16S rRNa genes from the oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria
    • Voordouw, G., S. M. Armstrong, M. F. Reimer, B. Fouts, A. J. Telang, Y. Shen, and D. Gevertz. 1996. Characterization of 16S rRNA genes from the oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria. Appl. Environ. Microbiol. 62:1623-1629.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1623-1629
    • Voordouw, G.1    Armstrong, S.M.2    Reimer, M.F.3    Fouts, B.4    Telang, A.J.5    Shen, Y.6    Gevertz, D.7
  • 43
    • 0029881547 scopus 로고    scopus 로고
    • PCR detection and quantitation of predominant and anaerobic bacteria in human and animal fecal samples
    • Wang, R. F., W. W. Cao, and C. E. Cernaglia. 1996. PCR detection and quantitation of predominant and anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62:1242-1247.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1242-1247
    • Wang, R.F.1    Cao, W.W.2    Cernaglia, C.E.3
  • 45
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson, K. H., and R. B. Blitchington. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 46
    • 0030613347 scopus 로고    scopus 로고
    • Bacterial diversity of a Carolina bay as determined by 16S rRNa gene analysis: Confirmation of novel taxa
    • Wise, M. G., J. V. McArthur, and L. J. Shimkets. 1997. Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: confirmation of novel taxa. Appl. Environ. Microbiol. 63:1505-1514.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1505-1514
    • Wise, M.G.1    McArthur, J.V.2    Shimkets, L.J.3
  • 47
    • 0031691877 scopus 로고    scopus 로고
    • Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences
    • Wood, J., K. P. Scott, G. Avgustin, C. J. Newbold, and H. J. Flint. 1998. Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl. Environ. Microbiol. 64:3683-3689.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3683-3689
    • Wood, J.1    Scott, K.P.2    Avgustin, G.3    Newbold, C.J.4    Flint, H.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.