-
1
-
-
0018406694
-
Comparison of bacterial populations of the pig cecum and colon based upon enumeration with specific energy sources
-
Allison, M. J., I. M. Robinson, J. A. Bucklin, and G. D. Booth. 1979. Comparison of bacterial populations of the pig cecum and colon based upon enumeration with specific energy sources. Appl. Environ. Microbiol. 37: 1142-1151.
-
(1979)
Appl. Environ. Microbiol.
, vol.37
, pp. 1142-1151
-
-
Allison, M.J.1
Robinson, I.M.2
Bucklin, J.A.3
Booth, G.D.4
-
2
-
-
0030979942
-
Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
-
Avgustin, G., F. Wright, and H. J. Flint. 1994. Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen. Int. J. Syst. Bacteriol. 47:284-288.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 284-288
-
-
Avgustin, G.1
Wright, F.2
Flint, H.J.3
-
3
-
-
0030041078
-
Econutrition and health maintenance - A new concept to prevent GI inflammation, ulceration and sepsis
-
Bengmark, S. 1996. Econutrition and health maintenance - a new concept to prevent GI inflammation, ulceration and sepsis. Clin. Nutr. 15:1-10.
-
(1996)
Clin. Nutr.
, vol.15
, pp. 1-10
-
-
Bengmark, S.1
-
4
-
-
1842362290
-
Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli
-
Brosius, J., M. L. Palmer, P. J. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
-
(1978)
Proc. Natl. Acad. Sci. USA
, vol.75
, pp. 4801-4805
-
-
Brosius, J.1
Palmer, M.L.2
Kennedy, P.J.3
Noller, H.F.4
-
5
-
-
0015464618
-
Commentary on the Hungate technique for cultivation of anaerobic bacteria
-
Bryant, M. P. 1972. Commentary on the Hungate technique for cultivation of anaerobic bacteria. Am. J. Clin. Nutr. 25:1324-1328.
-
(1972)
Am. J. Clin. Nutr.
, vol.25
, pp. 1324-1328
-
-
Bryant, M.P.1
-
6
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
-
Collins, M. D., P. A. Lawson, A. Willems, J. J. Cordoba, J. Fernandez-Garayzabal, P. Garcia, J. Cai, H. Hippe, and J. A. E. Farrow. 1994. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int. J. Syst. Bacteriol. 44:812-826.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
Farrow, J.A.E.9
-
7
-
-
0020681426
-
Bacterial populations associated with different regions of the human colon wall
-
Croucher, S. C., A. P. Houston, C. E. Bayliss, and R. J. Turner. 1983. Bacterial populations associated with different regions of the human colon wall. Appl. Environ. Microbiol. 45:1025-1033.
-
(1983)
Appl. Environ. Microbiol.
, vol.45
, pp. 1025-1033
-
-
Croucher, S.C.1
Houston, A.P.2
Bayliss, C.E.3
Turner, R.J.4
-
8
-
-
0031132109
-
Colonic microflora: Nutrition and health
-
Cummings, J. H., and G. T. MacFarlane. 1997. Colonic microflora: nutrition and health. Nutrition 13:476-478.
-
(1997)
Nutrition
, vol.13
, pp. 476-478
-
-
Cummings, J.H.1
MacFarlane, G.T.2
-
9
-
-
0030969814
-
Role of intestinal bacteria in nutrient metabolism
-
Cummings, J. H., and G. T. MacFarlane. 1997. Role of intestinal bacteria in nutrient metabolism. Clin. Nutr. 16:3-11.
-
(1997)
Clin. Nutr.
, vol.16
, pp. 3-11
-
-
Cummings, J.H.1
MacFarlane, G.T.2
-
11
-
-
0031714906
-
Changes in bacterial populations of pigs fed different sources of dietary fibre, and the development of swine dysentery after experimental infection
-
Durmic, Z., J. R. Pethick, and D. J. Hampson. 1998. Changes in bacterial populations of pigs fed different sources of dietary fibre, and the development of swine dysentery after experimental infection. J. Appl. Microbiol. 85: 574-582.
-
(1998)
J. Appl. Microbiol.
, vol.85
, pp. 574-582
-
-
Durmic, Z.1
Pethick, J.R.2
Hampson, D.J.3
-
12
-
-
0000948723
-
In vitro method for quantitation of the fermentation of starch by human fecal bacteria
-
Edwards, C. A., G. Gibson, M. Champ, B. B. Jensen, J. C. Mathers, F. Nagengast, C. Rumney, and A. Quehl. 1996. In vitro method for quantitation of the fermentation of starch by human fecal bacteria. J. Sci. Food Agric. 71: 209-217.
-
(1996)
J. Sci. Food Agric.
, vol.71
, pp. 209-217
-
-
Edwards, C.A.1
Gibson, G.2
Champ, M.3
Jensen, B.B.4
Mathers, J.C.5
Nagengast, F.6
Rumney, C.7
Quehl, A.8
-
13
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNa genes from a mixture of bacterial species
-
Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
14
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
15
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (version 3.2)
-
Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
16
-
-
0025778965
-
Rapid 16S ribosomal DNa sequencing from a single colony without DNa extraction or purification
-
Frothingham, R., R. L. Allen, and K. H. Wilson. 1991. Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification. BioTechniques 11:40-44.
-
(1991)
BioTechniques
, vol.11
, pp. 40-44
-
-
Frothingham, R.1
Allen, R.L.2
Wilson, K.H.3
-
17
-
-
0001294391
-
Immunological aspects of host/microbiota interactions at the intestinal epithelium
-
R. I. Mackie, B. A. White, and R. E. Isaacson (ed.), Chapman and Hall, New York, N.Y.
-
Gaskins, H. R. 1996. Immunological aspects of host/microbiota interactions at the intestinal epithelium, p. 537-587. In R. I. Mackie, B. A. White, and R. E. Isaacson (ed.), Gastrointestinal microbiology, vol. 2. Chapman and Hall, New York, N.Y.
-
(1996)
Gastrointestinal Microbiology
, vol.2
, pp. 537-587
-
-
Gaskins, H.R.1
-
18
-
-
0027399530
-
Identification of protein coding regions by database similarity search
-
Gish, W., and D. J. States. 1993. Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-272.
-
(1993)
Nat. Genet.
, vol.3
, pp. 266-272
-
-
Gish, W.1
States, D.J.2
-
19
-
-
0026605537
-
CLUSTAL V: Improved software for multiple sequence alignment
-
Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 189-191
-
-
Higgins, D.G.1
Bleasby, A.J.2
Fuchs, R.3
-
20
-
-
77956851336
-
Rumen bacteria
-
Hobson, P. N. 1969. Rumen bacteria. Methods Microbiol. 3B: 133-149.
-
(1969)
Methods Microbiol.
, vol.3 B
, pp. 133-149
-
-
Hobson, P.N.1
-
21
-
-
0000717077
-
Probiotics for pigs
-
R. Fuller (ed.), Chapman and Hall, London, United Kingdom
-
Jonsson, E., and P. L. Conway. 1992. Probiotics for pigs, p. 260-316. In R. Fuller (ed.), Probiotics. Chapman and Hall, London, United Kingdom.
-
(1992)
Probiotics
, pp. 260-316
-
-
Jonsson, E.1
Conway, P.L.2
-
22
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens, G., K. Linstrom, and A. Saano. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-805.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Linstrom, K.2
Saano, A.3
-
23
-
-
0000219186
-
AL
-
P. H. A. Sneath, N. S. Mair, and M. E. Sharpe (ed.), Williams and Wilkins, Baltimore, Md.
-
AL, p. 1209-1234. In P. H. A. Sneath, N. S. Mair, and M. E. Sharpe (ed.), Bergey's manual of systematic bacteriology, vol. 2. Williams and Wilkins, Baltimore, Md.
-
(1986)
Bergey's Manual of Systematic Bacteriology
, vol.2
, pp. 1209-1234
-
-
Kandler, O.1
Weiss, N.2
-
24
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
25
-
-
0032525167
-
A molecular view of microbial diversity in a dynamic landfill in Québec
-
Lloyd-Jones, G., and P. C. K. Lau. 1998. A molecular view of microbial diversity in a dynamic landfill in Québec. FEMS Microbiol. Lett. 172:219-226.
-
(1998)
FEMS Microbiol. Lett.
, vol.172
, pp. 219-226
-
-
Lloyd-Jones, G.1
Lau, P.C.K.2
-
26
-
-
0031033118
-
Crenarchaeota in Lake Michigan sediments
-
MacGregor, B. J., D. P. Moser, E. W. Alm, K. H. Nealson, and D. A. Stahl. 1997. Crenarchaeota in Lake Michigan sediments. Appl. Environ. Microbiol. 63:1178-1181.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1178-1181
-
-
MacGregor, B.J.1
Moser, D.P.2
Alm, E.W.3
Nealson, K.H.4
Stahl, D.A.5
-
27
-
-
0028170111
-
The ribosomal database project
-
Maidak, B. L., N. Larsen, M. J. McCaughey, R. Overbeek, G. J. Olsen, K. Forgel, J. Blandy, and C. R. Woese. 1994. The ribosomal database project. Nucleic Acids Res. 22:3485-3487.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3485-3487
-
-
Maidak, B.L.1
Larsen, N.2
McCaughey, M.J.3
Overbeek, R.4
Olsen, G.J.5
Forgel, K.6
Blandy, J.7
Woese, C.R.8
-
29
-
-
0016167941
-
Human fecal flora: The normal flora of 20 Japanese-Hawaiians
-
Moore, W. E. C., and L. V. Holdeman. 1974. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Environ. Microbiol. 27:961-979.
-
(1974)
Appl. Environ. Microbiol.
, vol.27
, pp. 961-979
-
-
Moore, W.E.C.1
Holdeman, L.V.2
-
30
-
-
0023369862
-
Effect of high-fiber and high-oil diets on the fecal flora of swine
-
Moore, W. E. C., L. V. H. Moore, E. P. Cato, T. D. Wilkins, and E. T. Kornegay. 1987. Effect of high-fiber and high-oil diets on the fecal flora of swine. Appl. Environ. Microbiol. 53:1638-1644.
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, pp. 1638-1644
-
-
Moore, W.E.C.1
Moore, L.V.H.2
Cato, E.P.3
Wilkins, T.D.4
Kornegay, E.T.5
-
31
-
-
0029084396
-
Intestinal floras of populations that have a high risk of colon cancer
-
Moore, W. E. C., and L. H. Moore. 1995. Intestinal floras of populations that have a high risk of colon cancer. Appl. Environ. Microbiol. 61:3202-3207.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3202-3207
-
-
Moore, W.E.C.1
Moore, L.H.2
-
32
-
-
0024311277
-
Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography
-
Richardson, A. J., A. G. Calder, C. S. Stewart, and A. Smith. 1989. Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography. Lett. Appl. Microbiol. 9: 5-8.
-
(1989)
Lett. Appl. Microbiol.
, vol.9
, pp. 5-8
-
-
Richardson, A.J.1
Calder, A.G.2
Stewart, C.S.3
Smith, A.4
-
34
-
-
0021719465
-
Characterization of predominant bacteria from the colons of normal and dysenteric pigs
-
Robinson, I. M., S. C. Whipp, J. A. Bucklin, and M. J. Allison. 1984. Characterization of predominant bacteria from the colons of normal and dysenteric pigs. Appl. Environ. Microbiol. 48:964-969.
-
(1984)
Appl. Environ. Microbiol.
, vol.48
, pp. 964-969
-
-
Robinson, I.M.1
Whipp, S.C.2
Bucklin, J.A.3
Allison, M.J.4
-
35
-
-
0023686938
-
Streptococcus intestinalis, a new species from the colons and feces of pigs
-
Robinson, I. M., J. M. Stromley, V. H. Varel, and E. P. Cato. 1988. Streptococcus intestinalis, a new species from the colons and feces of pigs. Int. J. Syst. Bacteriol. 38:245-248.
-
(1988)
Int. J. Syst. Bacteriol.
, vol.38
, pp. 245-248
-
-
Robinson, I.M.1
Stromley, J.M.2
Varel, V.H.3
Cato, E.P.4
-
36
-
-
0018342493
-
Types and distribution of anaerobic bacteria in the large intestine of pigs
-
Russell, E. G. 1979. Types and distribution of anaerobic bacteria in the large intestine of pigs. Appl. Environ. Microbiol. 37:187-193.
-
(1979)
Appl. Environ. Microbiol.
, vol.37
, pp. 187-193
-
-
Russell, E.G.1
-
37
-
-
0023375195
-
The neighbor joining method: A new method for constructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
39
-
-
0028028182
-
A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species identification in bacteriology
-
Stackebrandt, E., and B. M. Grobel. 1994. A place for DNA-DNA reassociation and 16S ribosomal-RNA sequence analysis in the present species identification in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Grobel, B.M.2
-
40
-
-
0024005650
-
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
-
Stahl, D. A., B. Flesher, H. R. Mansfield, and L. Montgomery. 1988. Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54:1079-1084.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1079-1084
-
-
Stahl, D.A.1
Flesher, B.2
Mansfield, H.R.3
Montgomery, L.4
-
41
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki, M. T., and S. J. Giovanni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovanni, S.J.2
-
42
-
-
0029662670
-
Characterization of 16S rRNa genes from the oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria
-
Voordouw, G., S. M. Armstrong, M. F. Reimer, B. Fouts, A. J. Telang, Y. Shen, and D. Gevertz. 1996. Characterization of 16S rRNA genes from the oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria. Appl. Environ. Microbiol. 62:1623-1629.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1623-1629
-
-
Voordouw, G.1
Armstrong, S.M.2
Reimer, M.F.3
Fouts, B.4
Telang, A.J.5
Shen, Y.6
Gevertz, D.7
-
43
-
-
0029881547
-
PCR detection and quantitation of predominant and anaerobic bacteria in human and animal fecal samples
-
Wang, R. F., W. W. Cao, and C. E. Cernaglia. 1996. PCR detection and quantitation of predominant and anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62:1242-1247.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1242-1247
-
-
Wang, R.F.1
Cao, W.W.2
Cernaglia, C.E.3
-
44
-
-
0026067797
-
16S ribosomal DNA for phylogenetic study
-
Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA for phylogenetic study. J. Bacteriol. 173:697-703.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
45
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson, K. H., and R. B. Blitchington. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:2273-2278.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
46
-
-
0030613347
-
Bacterial diversity of a Carolina bay as determined by 16S rRNa gene analysis: Confirmation of novel taxa
-
Wise, M. G., J. V. McArthur, and L. J. Shimkets. 1997. Bacterial diversity of a Carolina bay as determined by 16S rRNA gene analysis: confirmation of novel taxa. Appl. Environ. Microbiol. 63:1505-1514.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1505-1514
-
-
Wise, M.G.1
McArthur, J.V.2
Shimkets, L.J.3
-
47
-
-
0031691877
-
Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences
-
Wood, J., K. P. Scott, G. Avgustin, C. J. Newbold, and H. J. Flint. 1998. Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl. Environ. Microbiol. 64:3683-3689.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3683-3689
-
-
Wood, J.1
Scott, K.P.2
Avgustin, G.3
Newbold, C.J.4
Flint, H.J.5
|