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Volumn 66, Issue 4, 2000, Pages 1654-1661

Phylogenetic relationships of butyrate-producing bacteria from the human gut

Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A; BUTYRIC ACID; RIBOSOME DNA; RNA 16S;

EID: 0034111016     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.4.1654-1661.2000     Document Type: Article
Times cited : (764)

References (50)
  • 2
    • 0030979942 scopus 로고
    • Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen
    • Avgustin, G., F. Wright, and H. J. Flint. 1994. Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen. Int. J. Syst. Bacteriol. 47:284-288.
    • (1994) Int. J. Syst. Bacteriol. , vol.47 , pp. 284-288
    • Avgustin, G.1    Wright, F.2    Flint, H.J.3
  • 3
    • 0030041078 scopus 로고    scopus 로고
    • Econutrition and health maintenance - A new concept to prevent GI inflammation, ulceration and sepsis
    • Bengmark, S. 1996. Econutrition and health maintenance - a new concept to prevent GI inflammation, ulceration and sepsis. Clin. Nutr. 15:1-10.
    • (1996) Clin. Nutr. , vol.15 , pp. 1-10
    • Bengmark, S.1
  • 4
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli
    • Brosius, J., M. L. Palmer, P. J. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.F.4
  • 5
    • 0015464618 scopus 로고
    • Commentary on the Hungate technique for cultivation of anaerobic bacteria
    • Bryant, M. P. 1972. Commentary on the Hungate technique for cultivation of anaerobic bacteria. Am. J. Clin. Nutr. 25:1324-1328.
    • (1972) Am. J. Clin. Nutr. , vol.25 , pp. 1324-1328
    • Bryant, M.P.1
  • 6
    • 0002120982 scopus 로고
    • The anaerobic monotrichous butyric acid-producing curved rod-shaped bacteria of the rumen
    • Bryant, M. P., and N. Small. 1956. The anaerobic monotrichous butyric acid-producing curved rod-shaped bacteria of the rumen. J. Bacteriol. 72: 16-21.
    • (1956) J. Bacteriol. , vol.72 , pp. 16-21
    • Bryant, M.P.1    Small, N.2
  • 8
    • 0001831910 scopus 로고
    • Toxicology of butyrate and short-chain fatty acids
    • M. J. (ed.), Taylor and Francis, London, United Kingdom
    • Csordas, A. 1995. Toxicology of butyrate and short-chain fatty acids, p. 105-125. In M. J. (ed.), Role of gut bacteria in human toxicology and pharmacology. Taylor and Francis, London, United Kingdom.
    • (1995) Role of Gut Bacteria in Human Toxicology and Pharmacology , pp. 105-125
    • Csordas, A.1
  • 9
    • 0023276469 scopus 로고
    • Short-chain fatty acids in human large intestine, portal, hepatic and venous blood
    • Cummings, J. H., E. W. Pomare, W. J. Branch, C. P. E. Naylor, and G. T. MacFarlane. 1987. Short-chain fatty acids in human large intestine, portal, hepatic and venous blood. Gut 28:1221-1227.
    • (1987) Gut , vol.28 , pp. 1221-1227
    • Cummings, J.H.1    Pomare, E.W.2    Branch, W.J.3    Naylor, C.P.E.4    Macfarlane, G.T.5
  • 10
    • 0002181978 scopus 로고
    • The colonic flora, fermentation and large bowel digestive function
    • S. F. Philips, J. H. Pemberton, and R. G. Shorter (ed.), Raven Press, New York, N.Y.
    • Cummings, J. H., and G. T. MacFarlane. 1991. The colonic flora, fermentation and large bowel digestive function, p. 51-91. In S. F. Philips, J. H. Pemberton, and R. G. Shorter (ed.), The large intestine: physiology, pathophysiology, and disease. Raven Press, New York, N.Y.
    • (1991) The Large Intestine: Physiology, Pathophysiology, and Disease , pp. 51-91
    • Cummings, J.H.1    MacFarlane, G.T.2
  • 11
    • 0031132109 scopus 로고    scopus 로고
    • Colonic microflora: Nutrition and health
    • Cummings, J. H., and G. T. MacFarlane. 1997. Colonic microflora: nutrition and health. Nutrition 13:476-478.
    • (1997) Nutrition , vol.13 , pp. 476-478
    • Cummings, J.H.1    MacFarlane, G.T.2
  • 12
    • 0030969814 scopus 로고    scopus 로고
    • Role of intestinal bacteria in nutrient metabolism
    • Cummings, J. H., and G. T. MacFarlane. 1997. Role of intestinal bacteria in nutrient metabolism. Clin. Nutr. 16:3-11.
    • (1997) Clin. Nutr. , vol.16 , pp. 3-11
    • Cummings, J.H.1    MacFarlane, G.T.2
  • 13
    • 0032923748 scopus 로고    scopus 로고
    • Alternative schemes of butyrate production in Butyrivibrio fibrisolvens and their relationship to acetate utilization, lactate production and phylogeny
    • Diez-Gonzalez, F., D. R. Bond, E. Jennings, and J. B. Russell. 1999. Alternative schemes of butyrate production in Butyrivibrio fibrisolvens and their relationship to acetate utilization, lactate production and phylogeny. Arch. Microbiol. 171:324-330.
    • (1999) Arch. Microbiol. , vol.171 , pp. 324-330
    • Diez-Gonzalez, F.1    Bond, D.R.2    Jennings, E.3    Russell, J.B.4
  • 14
    • 0032527787 scopus 로고    scopus 로고
    • Inhibitory activity of gut bacteria against Escherichia coli O157 mediated by dietary plant metabolites
    • Duncan, S. H., H. J. Flint, and C. S. Stewart. 1998. Inhibitory activity of gut bacteria against Escherichia coli O157 mediated by dietary plant metabolites. FEMS Microbiol. Lett. 164:283-288.
    • (1998) FEMS Microbiol. Lett. , vol.164 , pp. 283-288
    • Duncan, S.H.1    Flint, H.J.2    Stewart, C.S.3
  • 16
    • 0000461280 scopus 로고
    • Confidence limits on phytogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 17
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (version 3.2)
    • Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 18
    • 0031692488 scopus 로고    scopus 로고
    • Variations of bacterial populations in human feces quantified by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • Franks, A. H., H. J. M. Harmsen, G. C. Raangs, G. J. Jansen, and G. W. Welling. 1998. Variations of bacterial populations in human feces quantified by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 64:3336-3345.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.M.2    Raangs, G.C.3    Jansen, G.J.4    Welling, G.W.5
  • 19
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity search
    • Gish, W., and D. J. States. 1993. Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-272.
    • (1993) Nat. Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.J.2
  • 20
    • 0001878128 scopus 로고
    • Bacterial fermentations
    • M. P. Starr (ed.), Springer-Verlag, New York, N.Y.
    • Gottschalk, G. 1979. Bacterial fermentations, p. 167-224. In M. P. Starr (ed.), Bacterial metabolism. Springer-Verlag, New York, N.Y.
    • (1979) Bacterial Metabolism , pp. 167-224
    • Gottschalk, G.1
  • 21
    • 0031055517 scopus 로고    scopus 로고
    • Butyrate acts as a survival factor for colonic epithelial cells: Further fuel for the in vivo versus in vitro debate
    • Hague, A., B. Singh, and C. Paraskeva. 1997. Butyrate acts as a survival factor for colonic epithelial cells: further fuel for the in vivo versus in vitro debate. Gastroenterology 112:1036-1040.
    • (1997) Gastroenterology , vol.112 , pp. 1036-1040
    • Hague, A.1    Singh, B.2    Paraskeva, C.3
  • 22
    • 0026605537 scopus 로고
    • CLUSTALV: Improved software for multiple sequence alignment
    • Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTALV: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 23
  • 27
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 28
    • 0025878740 scopus 로고
    • Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit rRNA
    • Lawson, P. A., S. E. Gharbia, H. N. Shah, and D. R. Clark. 1991. Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit rRNA. Int. J. Syst. Bacteriol. 41:347-354.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 347-354
    • Lawson, P.A.1    Gharbia, S.E.2    Shah, H.N.3    Clark, D.R.4
  • 31
    • 0016167941 scopus 로고
    • Human fecal flora: The normal flora of 20 Japanese-Hawaiians
    • Moore, W. E. C., and L. V. Holdeman. 1974. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Environ. Microbiol. 27:961-979.
    • (1974) Appl. Environ. Microbiol. , vol.27 , pp. 961-979
    • Moore, W.E.C.1    Holdeman, L.V.2
  • 32
    • 0029084396 scopus 로고
    • Intestinal floras of populations that have a high risk of colon cancer
    • Moore, W. E. C., and L. H. Moore. 1995. Intestinal floras of populations that have a high risk of colon cancer. Appl. Environ. Microbiol. 61:3202-3207.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3202-3207
    • Moore, W.E.C.1    Moore, L.H.2
  • 33
    • 0028184602 scopus 로고    scopus 로고
    • Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rDNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Carl. 1996. Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rDNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60:871-879.
    • (1996) Appl. Environ. Microbiol. , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Carl, D.M.3
  • 34
    • 0032759329 scopus 로고    scopus 로고
    • Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig
    • Pryde, S. E., A. J. Richardson, C. S. Stewart, and H. J. Flint. 1999. Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig. Appl. Environ. Microbiol. 65:5372-5377.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5372-5377
    • Pryde, S.E.1    Richardson, A.J.2    Stewart, C.S.3    Flint, H.J.4
  • 35
    • 0024311277 scopus 로고
    • Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography
    • Richardson, A. J., A. G. Calder, C. S. Stewart, and A. Smith. 1989. Simultaneous determination of volatile and non-volatile acidic fermentation products of anaerobes by capillary gas chromatography. Lett. Appl. Microbiol. 9:5-8.
    • (1989) Lett. Appl. Microbiol. , vol.9 , pp. 5-8
    • Richardson, A.J.1    Calder, A.G.2    Stewart, C.S.3    Smith, A.4
  • 36
    • 0032521113 scopus 로고    scopus 로고
    • The characterization of butyrate transport across pig and human colonic luminal membrane
    • Ritzhaupt, A., A. Ellis, K. B. Hosie, and S. P. Shirazi-Beechey. 1998. The characterization of butyrate transport across pig and human colonic luminal membrane. J. Physiol. 507:819-830.
    • (1998) J. Physiol. , vol.507 , pp. 819-830
    • Ritzhaupt, A.1    Ellis, A.2    Hosie, K.B.3    Shirazi-Beechey, S.P.4
  • 37
    • 0018855591 scopus 로고
    • The colonic epithelium in ulcerative colitis: An energy deficient disease?
    • Roediger, W. E. W. 1980. The colonic epithelium in ulcerative colitis: an energy deficient disease? Lancet ii:712-715.
    • (1980) Lancet , vol.2 , pp. 712-715
    • Roediger, W.E.W.1
  • 38
    • 0028962907 scopus 로고
    • Isolation and characteristics of a wheatbran degrading butyrivibrio from human faeces
    • Rumney, C., S. H. Duncan, C. Henderson, and C. S. Stewart. 1995. Isolation and characteristics of a wheatbran degrading butyrivibrio from human faeces. Lett. Appl. Microbiol. 20:232-236.
    • (1995) Lett. Appl. Microbiol. , vol.20 , pp. 232-236
    • Rumney, C.1    Duncan, S.H.2    Henderson, C.3    Stewart, C.S.4
  • 39
    • 0023375195 scopus 로고
    • The neighbor joining method: A new method for constructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 41
    • 0030772052 scopus 로고    scopus 로고
    • High-frequency transfer of naturally occurring chromosomal tetracycline resistance element in the ruminal anaerobe Butyrivibrio fibrisolvens
    • Scott, K. P., T. M. Barbosa, K. J. Forbes, and H. J. Flint. 1997. High-frequency transfer of naturally occurring chromosomal tetracycline resistance element in the ruminal anaerobe Butyrivibrio fibrisolvens. Appl. Environ. Microbiol. 6:3405-3411.
    • (1997) Appl. Environ. Microbiol. , vol.6 , pp. 3405-3411
    • Scott, K.P.1    Barbosa, T.M.2    Forbes, K.J.3    Flint, H.J.4
  • 42
    • 0014485312 scopus 로고
    • Cellulolytic bacteria occurring in the rumen of sheep conditioned to low-protein teff hay
    • Shane, B. S., L. Gouws, and A. Kistner. 1969. Cellulolytic bacteria occurring in the rumen of sheep conditioned to low-protein teff hay. J. Gen. Microbiol. 55:445-457.
    • (1969) J. Gen. Microbiol. , vol.55 , pp. 445-457
    • Shane, B.S.1    Gouws, L.2    Kistner, A.3
  • 43
    • 0000623825 scopus 로고    scopus 로고
    • Role of short-chain fatty acids in the prevention of colorectal cancer
    • Sheppach, W., H. P. Bartram, and F. Richter. 1998. Role of short-chain fatty acids in the prevention of colorectal cancer. Eur. J. Cancer 31A:107-1080.
    • (1998) Eur. J. Cancer , vol.31 A , pp. 107-1080
    • Sheppach, W.1    Bartram, H.P.2    Richter, F.3
  • 44
    • 0027351037 scopus 로고
    • Physiological and pathophysiological effects of carbohydrate fermentation
    • Szylit, O., and C. Andrieux. 1993. Physiological and pathophysiological effects of carbohydrate fermentation. World Rev. Nutr. Diet. 74:88-122.
    • (1993) World Rev. Nutr. Diet. , vol.74 , pp. 88-122
    • Szylit, O.1    Andrieux, C.2
  • 46
    • 0029881547 scopus 로고    scopus 로고
    • PCR detection and quantitation of predominant and anaerobic bacteria in human and animal fecal samples
    • Wang, R. F., W. W. Cao, and C. E. Cernaglia. 1996. PCR detection and quantitation of predominant and anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62:1242-1247.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1242-1247
    • Wang, R.F.1    Cao, W.W.2    Cernaglia, C.E.3
  • 48
    • 0030061369 scopus 로고    scopus 로고
    • Phylogenetic analysis of Butyrivibrio strains reveals three distinct groups of species within the Clostridium subphylum of the gram-positive bacteria
    • Willems, A., M. Amat-Marco, and M. D. Collins. 1996. Phylogenetic analysis of Butyrivibrio strains reveals three distinct groups of species within the Clostridium subphylum of the gram-positive bacteria. Int. J. Syst. Bacteriol. 44:195-199.
    • (1996) Int. J. Syst. Bacteriol. , vol.44 , pp. 195-199
    • Willems, A.1    Amat-Marco, M.2    Collins, M.D.3
  • 49
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson, K. H., and R. B. Blitchington. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 50
    • 0031691877 scopus 로고    scopus 로고
    • Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences
    • Wood, J., K. P. Scott, G. Avgustin, C. J. Newbold, and H. J. Flint. 1998. Estimation of the relative abundance of different Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl. Environ. Microbiol. 64:3683-3689.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3683-3689
    • Wood, J.1    Scott, K.P.2    Avgustin, G.3    Newbold, C.J.4    Flint, H.J.5


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