-
1
-
-
31544446038
-
Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
-
Adkins MW, Tyler JK. 2006. Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol Cell 21:405-416.
-
(2006)
Mol Cell
, vol.21
, pp. 405-416
-
-
Adkins, M.W.1
Tyler, J.K.2
-
2
-
-
2942550662
-
Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PH05 and PH08 genes
-
Adkins MW, Howar SR, Tyler JK. 2004. Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PH05 and PH08 genes. Mol Cell 14:657-666.
-
(2004)
Mol Cell
, vol.14
, pp. 657-666
-
-
Adkins, M.W.1
Howar, S.R.2
Tyler, J.K.3
-
3
-
-
0036849262
-
Epigenetic consequences of nucleosome dynamics
-
Ahmad K, Henikoff S. 2002. Epigenetic consequences of nucleosome dynamics. Cell 111:281-284.
-
(2002)
Cell
, vol.111
, pp. 281-284
-
-
Ahmad, K.1
Henikoff, S.2
-
4
-
-
0022799080
-
Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements
-
Aimer A, Rudolph H, Hinnen A, Horz W. 1986. Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements. EMBO J 5:2689-2696.
-
(1986)
EMBO J
, vol.5
, pp. 2689-2696
-
-
Aimer, A.1
Rudolph, H.2
Hinnen, A.3
Horz, W.4
-
5
-
-
0030699322
-
The general regulatory factor Reb1p controls basal, but not Gal4p-mediated, transcription of the GCY1 gene in yeast
-
Angermayr M, Bandlow W. 1997. The general regulatory factor Reb1p controls basal, but not Gal4p-mediated, transcription of the GCY1 gene in yeast. Mol Gen Genet 256:682-689.
-
(1997)
Mol Gen Genet
, vol.256
, pp. 682-689
-
-
Angermayr, M.1
Bandlow, W.2
-
6
-
-
0037687337
-
Permanent nucleosome exclusion from the Gal4p-inducible yeast GCY1 promoter
-
Angermayr M, Bandlow W. 2003. Permanent nucleosome exclusion from the Gal4p-inducible yeast GCY1 promoter. J Biol Chem 278:11026-11031.
-
(2003)
J Biol Chem
, vol.278
, pp. 11026-11031
-
-
Angermayr, M.1
Bandlow, W.2
-
7
-
-
0038719686
-
Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter
-
Angermayr M, Oechsner U, Bandlow W. 2003. Reb1p-dependent DNA bending effects nucleosome positioning and constitutive transcription at the yeast profilin promoter. J Biol Chem 278:17918-17926.
-
(2003)
J Biol Chem
, vol.278
, pp. 17918-17926
-
-
Angermayr, M.1
Oechsner, U.2
Bandlow, W.3
-
8
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL. 2004. Global nucleosome occupancy in yeast. Genome Biol 5:R62.
-
(2004)
Genome Biol
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
9
-
-
2942574467
-
Removal of promoter nucleosomes by disassembly rather than sliding in vivo
-
Boeger H, Griesenbeck J, Strattan JS, Kornberg RD. 2004. Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Mol Cell 14:667-673.
-
(2004)
Mol Cell
, vol.14
, pp. 667-673
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
10
-
-
0029890667
-
Evidence that Spt6p controls chromatin structure by a direct interaction with histones
-
Bortvin A, Winston F. 1996. Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science 272:1473-1476.
-
(1996)
Science
, vol.272
, pp. 1473-1476
-
-
Bortvin, A.1
Winston, F.2
-
11
-
-
33746322063
-
Rapid accessibility of nucleosomal DNA in yeast on a second time scale
-
Bucceri A, Kapitza K, Thoma F. 2006. Rapid accessibility of nucleosomal DNA in yeast on a second time scale. EMBO J 25:3123-3132.
-
(2006)
EMBO J
, vol.25
, pp. 3123-3132
-
-
Bucceri, A.1
Kapitza, K.2
Thoma, F.3
-
12
-
-
33751528593
-
A chromatin-mediated mechanism for specification of conditional transcription factor targets
-
Buck MJ, Lieb JD. 2006. A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nat Genet 38:1446-1451.
-
(2006)
Nat Genet
, vol.38
, pp. 1446-1451
-
-
Buck, M.J.1
Lieb, J.D.2
-
13
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. 2005. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123:581-592.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
14
-
-
11844303478
-
Mechanism of transcriptional silencing in yeast
-
Chen L, Widom J. 2005. Mechanism of transcriptional silencing in yeast. Cell 120:37-48.
-
(2005)
Cell
, vol.120
, pp. 37-48
-
-
Chen, L.1
Widom, J.2
-
15
-
-
0034677988
-
Two distinct nucleosome alterations characterize chromatin remodeling at the Saccharomyces cerevisiae ADH2 promoter
-
Di Mauro E, Kendrew SG, Caserta M. 2000. Two distinct nucleosome alterations characterize chromatin remodeling at the Saccharomyces cerevisiae ADH2 promoter. J Biol Chem 275:7612-7618.
-
(2000)
J Biol Chem
, vol.275
, pp. 7612-7618
-
-
Di Mauro, E.1
Kendrew, S.G.2
Caserta, M.3
-
16
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. 2007. Dynamics of replication-independent histone turnover in budding yeast. Science 315:1405-1408.
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.F.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Friedman, N.5
Rando, O.J.6
-
17
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
Elf J, Li GW, Xie XS. 2007. Probing transcription factor dynamics at the single-molecule level in a living cell. Science 316:1191-1194.
-
(2007)
Science
, vol.316
, pp. 1191-1194
-
-
Elf, J.1
Li, G.W.2
Xie, X.S.3
-
18
-
-
0032492846
-
Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex
-
Fryer CJ, Archer TK. 1998. Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex. Nature 393:88-91.
-
(1998)
Nature
, vol.393
, pp. 88-91
-
-
Fryer, C.J.1
Archer, T.K.2
-
19
-
-
0033571273
-
Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding
-
Gregory PD, Schmid A, Zavari M, Munsterkotter M, Horz W. 1999. Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding. EMBO J 18:6407-6414.
-
(1999)
EMBO J
, vol.18
, pp. 6407-6414
-
-
Gregory, P.D.1
Schmid, A.2
Zavari, M.3
Munsterkotter, M.4
Horz, W.5
-
20
-
-
33646066806
-
Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates
-
Guermah M, Palhan VB, Tackett AJ, Chait BT, Roeder RG. 2006. Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates. Cell 125:275-286.
-
(2006)
Cell
, vol.125
, pp. 275-286
-
-
Guermah, M.1
Palhan, V.B.2
Tackett, A.J.3
Chait, B.T.4
Roeder, R.G.5
-
21
-
-
29144531244
-
Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning
-
Guillemette B, Bataille AR, Gevry N, Adam M, Blanchette M, Robert F, Gaudreau L. 2005. Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning. PLoS Biol 3:384.
-
(2005)
PLoS Biol
, vol.3
, pp. 384
-
-
Guillemette, B.1
Bataille, A.R.2
Gevry, N.3
Adam, M.4
Blanchette, M.5
Robert, F.6
Gaudreau, L.7
-
23
-
-
0038740693
-
Tails of intrigue: Phosphorylation of RNA polymerase II mediates histone methylation
-
Hampsey M, Reinberg D. 2003. Tails of intrigue: Phosphorylation of RNA polymerase II mediates histone methylation. Cell 113:429-432.
-
(2003)
Cell
, vol.113
, pp. 429-432
-
-
Hampsey, M.1
Reinberg, D.2
-
24
-
-
0024261583
-
Nucleosome loss activates yeast downstream promoters in vivo
-
Han M, Grunstein M. 1988. Nucleosome loss activates yeast downstream promoters in vivo. Cell 55:1137-1145.
-
(1988)
Cell
, vol.55
, pp. 1137-1145
-
-
Han, M.1
Grunstein, M.2
-
25
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA. 2004. Transcriptional regulatory code of a eukaryotic genome. Nature 431:99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
Jennings, E.G.11
Zeitlinger, J.12
Pokholok, D.K.13
Kellis, M.14
Rolfe, P.A.15
Takusagawa, K.T.16
Lander, E.S.17
Gifford, D.K.18
Fraenkel, E.19
Young, R.A.20
more..
-
26
-
-
28544449926
-
Nucleosome stability at the yeast PHO5 and PHO8 promoters correlates with differential cofactor requirements for chromatin opening
-
Hertel CB, Langst G, Horz W, Korber P. 2005. Nucleosome stability at the yeast PHO5 and PHO8 promoters correlates with differential cofactor requirements for chromatin opening. Mol Cell Biol 25:10755-10767.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10755-10767
-
-
Hertel, C.B.1
Langst, G.2
Horz, W.3
Korber, P.4
-
27
-
-
0027068143
-
Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure
-
Hirschhorn JN, Brown SA, Clark CD, Winston F. 1992. Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev 6:2288-2298.
-
(1992)
Genes Dev
, vol.6
, pp. 2288-2298
-
-
Hirschhorn, J.N.1
Brown, S.A.2
Clark, C.D.3
Winston, F.4
-
28
-
-
33749153628
-
Nucleosome positions predicted through comparative genomics
-
Ioshikhes IP, Albert I, Zanton SJ, Pugh BF. 2006. Nucleosome positions predicted through comparative genomics. Nat Genet 38:1210-1215.
-
(2006)
Nat Genet
, vol.38
, pp. 1210-1215
-
-
Ioshikhes, I.P.1
Albert, I.2
Zanton, S.J.3
Pugh, B.F.4
-
29
-
-
33846663256
-
Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication
-
Jamai A, Imoberdorf RM, Strubin M. 2007. Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication. Mol Cell 25:345-355.
-
(2007)
Mol Cell
, vol.25
, pp. 345-355
-
-
Jamai, A.1
Imoberdorf, R.M.2
Strubin, M.3
-
30
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
Kaplan CD, Laprade L, Winston F. 2003. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301:1096-1099.
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Laprade, L.2
Winston, F.3
-
31
-
-
0033830633
-
Roles of transcription factor Mot3 and chromatin in repression of the hypoxic gene ANB1 in yeast
-
Kastaniotis AJ, Mennella TA, Konrad C, Torres AM, Zitomer RS. 2000. Roles of transcription factor Mot3 and chromatin in repression of the hypoxic gene ANB1 in yeast. Mol Cell Biol 20:7088-7098.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 7088-7098
-
-
Kastaniotis, A.J.1
Mennella, T.A.2
Konrad, C.3
Torres, A.M.4
Zitomer, R.S.5
-
32
-
-
0028017601
-
Chromatin structure modulation in Saccharomyces cerevisiae by centromere and promoter factor 1
-
Kent NA, Tsang JS, Crowther DJ, Mellor J. 1994. Chromatin structure modulation in Saccharomyces cerevisiae by centromere and promoter factor 1. Mol Cell Biol 14:5229-5241.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 5229-5241
-
-
Kent, N.A.1
Tsang, J.S.2
Crowther, D.J.3
Mellor, J.4
-
33
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
Keogh MC, Kurdistani SK, Morris SA, Ahn SH, Podolny V, Collins SR, Schuldiner M, Chin K, Punna T, Thompson NJ, Boone C, Emili A, Weissman JS, Hughes TR, Strahl BD, Grunstein M, Greenblatt JF, Buratowski S, Krogan NJ. 2005. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123:593-605.
-
(2005)
Cell
, vol.123
, pp. 593-605
-
-
Keogh, M.C.1
Kurdistani, S.K.2
Morris, S.A.3
Ahn, S.H.4
Podolny, V.5
Collins, S.R.6
Schuldiner, M.7
Chin, K.8
Punna, T.9
Thompson, N.J.10
Boone, C.11
Emili, A.12
Weissman, J.S.13
Hughes, T.R.14
Strahl, B.D.15
Grunstein, M.16
Greenblatt, J.F.17
Buratowski, S.18
Krogan, N.J.19
-
34
-
-
33646129019
-
The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters
-
Korber P, Barbaric S, Luckenbach T, Schmid A, Schermer UJ, Blaschke D, Horz W. 2006. The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters. J Biol Chem 281:5539-5545.
-
(2006)
J Biol Chem
, vol.281
, pp. 5539-5545
-
-
Korber, P.1
Barbaric, S.2
Luckenbach, T.3
Schmid, A.4
Schermer, U.J.5
Blaschke, D.6
Horz, W.7
-
35
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee CK, Shibata Y, Rao B, Strahl BD, Lieb JD. 2004. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 36:900-905.
-
(2004)
Nat Genet
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
36
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
in press
-
Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C. 2007. A high-resolution atlas of nucleosome occupancy in yeast. Nature Genetics (in press).
-
(2007)
Nature Genetics
-
-
Lee, W.1
Tillo, D.2
Bray, N.3
Morse, R.H.4
Davis, R.W.5
Hughes, T.R.6
Nislow, C.7
-
37
-
-
0035099393
-
Are all DNA binding and transcription regulation by an activator physiologically relevant?
-
Li Q, Johnston SA. 2001. Are all DNA binding and transcription regulation by an activator physiologically relevant? Mol Cell Biol 21:2467-2474.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2467-2474
-
-
Li, Q.1
Johnston, S.A.2
-
38
-
-
0035823553
-
Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence
-
Li B, Reese JC. 2001. Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence. J Biol Chem 276:33788-33797.
-
(2001)
J Biol Chem
, vol.276
, pp. 33788-33797
-
-
Li, B.1
Reese, J.C.2
-
39
-
-
29444454191
-
Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling
-
Li B, Pattenden SG, Lee D, Gutierrez J, Chen J, Seidel C, Gerton J, Workman JL. 2005a. Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. Proc Natl Acad Sci USA 102:18385-18390.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 18385-18390
-
-
Li, B.1
Pattenden, S.G.2
Lee, D.3
Gutierrez, J.4
Chen, J.5
Seidel, C.6
Gerton, J.7
Workman, J.L.8
-
41
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
Lieb JD, Liu X, Botstein D, Brown PO. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat Genet 28:327-334.
-
(2001)
Nat Genet
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
42
-
-
33749381311
-
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection
-
Liu X, Lee CK, Granek JA, Clarke ND, Lieb JD. 2006. Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res 16:1517-1528.
-
(2006)
Genome Res
, vol.16
, pp. 1517-1528
-
-
Liu, X.1
Lee, C.K.2
Granek, J.A.3
Clarke, N.D.4
Lieb, J.D.5
-
43
-
-
0035929147
-
Nucleosome sliding via TBP DNA binding in vivo
-
Lomvardas S, Thanos D. 2001. Nucleosome sliding via TBP DNA binding in vivo. Cell 106:685-696.
-
(2001)
Cell
, vol.106
, pp. 685-696
-
-
Lomvardas, S.1
Thanos, D.2
-
44
-
-
0037178777
-
Modifying gene expression programs by altering core promoter chromatin architecture
-
Lomvardas S, Thanos D. 2002. Modifying gene expression programs by altering core promoter chromatin architecture. Cell 110:261-271.
-
(2002)
Cell
, vol.110
, pp. 261-271
-
-
Lomvardas, S.1
Thanos, D.2
-
45
-
-
0033820936
-
Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements
-
Mai X, Chou S, Struhl K. 2000. Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements. Mol Cell Biol 20:6668-6676.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 6668-6676
-
-
Mai, X.1
Chou, S.2
Struhl, K.3
-
46
-
-
33750684669
-
Transcriptional repression by Tup1-Ssn6
-
Malave TM, Dent SY. 2006. Transcriptional repression by Tup1-Ssn6. Biochem Cell Biol 84:437-443.
-
(2006)
Biochem Cell Biol
, vol.84
, pp. 437-443
-
-
Malave, T.M.1
Dent, S.Y.2
-
47
-
-
3042801306
-
Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1
-
Martinez-Campa C, Politis P, Moreau JL, Kent N, Goodall J, Mellor J, Coding CR. 2004. Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1. Mol Cell 15:69-81.
-
(2004)
Mol Cell
, vol.15
, pp. 69-81
-
-
Martinez-Campa, C.1
Politis, P.2
Moreau, J.L.3
Kent, N.4
Goodall, J.5
Mellor, J.6
Coding, C.R.7
-
48
-
-
22544432870
-
The dynamics of chromatin remodeling at promoters
-
Mellor J. 2005. The dynamics of chromatin remodeling at promoters. Mol Cell 19:147-157.
-
(2005)
Mol Cell
, vol.19
, pp. 147-157
-
-
Mellor, J.1
-
49
-
-
0346433724
-
Recruitment of Tup1-Ssn6 by yeast hypoxic genes and chromatin-independent exclusion of TATA binding protein
-
Mennella TA, Klinkenberg LG, Zitomer RS. 2003. Recruitment of Tup1-Ssn6 by yeast hypoxic genes and chromatin-independent exclusion of TATA binding protein. Eukaryot Cell 2:1288-1303.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 1288-1303
-
-
Mennella, T.A.1
Klinkenberg, L.G.2
Zitomer, R.S.3
-
50
-
-
33947098453
-
Histone replacement marks the boundaries of cis-regulatory domains
-
Mito Y, Henikoff JG, Henikoff S. 2007. Histone replacement marks the boundaries of cis-regulatory domains. Science 315:1408-1411.
-
(2007)
Science
, vol.315
, pp. 1408-1411
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
51
-
-
0032531695
-
Nucleosome structure of the yeast CHA1 promoter: Analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators
-
Moreira JM, Holmberg S. 1998. Nucleosome structure of the yeast CHA1 promoter: Analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators. EMBO J 17:6028-6038.
-
(1998)
EMBO J
, vol.17
, pp. 6028-6038
-
-
Moreira, J.M.1
Holmberg, S.2
-
52
-
-
0042733700
-
Getting into chromatin: How do transcription factors get past the histones?
-
Morse RH. 2003. Getting into chromatin: How do transcription factors get past the histones? Biochem Cell Biol 81:101-112.
-
(2003)
Biochem Cell Biol
, vol.81
, pp. 101-112
-
-
Morse, R.H.1
-
53
-
-
0038652118
-
Genome-wide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
-
Nagy PL, Cleary ML, Brown PO, Lieb JD. 2003. Genome-wide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin. Proc Natl Acad Sci USA 100:6364-6369.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6364-6369
-
-
Nagy, P.L.1
Cleary, M.L.2
Brown, P.O.3
Lieb, J.D.4
-
54
-
-
33846862405
-
High-throughput mapping of the chromatin structure of human promoters
-
Ozsolak F, Song JS, Liu XS, Fisher DE. 2007. High-throughput mapping of the chromatin structure of human promoters. Nat Biotechnol 25:244-248.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 244-248
-
-
Ozsolak, F.1
Song, J.S.2
Liu, X.S.3
Fisher, D.E.4
-
55
-
-
0025369195
-
Effect of transcription of yeast chromatin on DNA topology in vivo
-
Pederson DS, Morse RH. 1990. Effect of transcription of yeast chromatin on DNA topology in vivo. EMBO J 9:1873-1881.
-
(1990)
EMBO J
, vol.9
, pp. 1873-1881
-
-
Pederson, D.S.1
Morse, R.H.2
-
56
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA. 2005. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122:517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
57
-
-
26844511498
-
Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin
-
Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. 2005. Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin. Cell 123:233-248.
-
(2005)
Cell
, vol.123
, pp. 233-248
-
-
Raisner, R.M.1
Hartley, P.D.2
Meneghini, M.D.3
Bao, M.Z.4
Liu, C.L.5
Schreiber, S.L.6
Rando, O.J.7
Madhani, H.D.8
-
58
-
-
0033868319
-
Artificially recruited TATA-binding protein fails to remodel chromatin and does not activate three promoters that require chromatin remodeling
-
Ryan MP, Stafford GA, Yu L, Morse RH. 2000. Artificially recruited TATA-binding protein fails to remodel chromatin and does not activate three promoters that require chromatin remodeling. Mol Cell Biol 20:5847-5857.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 5847-5857
-
-
Ryan, M.P.1
Stafford, G.A.2
Yu, L.3
Morse, R.H.4
-
59
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
Satchwell SC, Drew HR, Travers AA. 1986. Sequence periodicities in chicken nucleosome core DNA. J Mol Biol 191:659-675.
-
(1986)
J Mol Biol
, vol.191
, pp. 659-675
-
-
Satchwell, S.C.1
Drew, H.R.2
Travers, A.A.3
-
60
-
-
8644287437
-
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
-
Schwabish MA, Struhl K. 2004. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol Cell Biol 24:10111-10117.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 10111-10117
-
-
Schwabish, M.A.1
Struhl, K.2
-
61
-
-
33646141366
-
Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II
-
Schwabish MA, Struhl K. 2006. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol Cell 22:415-422.
-
(2006)
Mol Cell
, vol.22
, pp. 415-422
-
-
Schwabish, M.A.1
Struhl, K.2
-
62
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E, Fondufe-Mittendorf Y, Chen L, Thastrom A, Field Y, Moore IK, Wang JP, Widom J. 2006. A genomic code for nucleosome positioning. Nature 442:772-778.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.P.7
Widom, J.8
-
63
-
-
0035805063
-
Silenced chromatin is permissive to activator binding and PIC recruitment
-
Sekinger EA, Gross DS. 2001. Silenced chromatin is permissive to activator binding and PIC recruitment. Cell 105:403-414.
-
(2001)
Cell
, vol.105
, pp. 403-414
-
-
Sekinger, E.A.1
Gross, D.S.2
-
64
-
-
20444403749
-
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
-
Sekinger EA, Moqtaderi Z, Struhl K. 2005. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell 18:735-748.
-
(2005)
Mol Cell
, vol.18
, pp. 735-748
-
-
Sekinger, E.A.1
Moqtaderi, Z.2
Struhl, K.3
-
65
-
-
33947260700
-
Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
-
Sertil O, Vemula A, Salmon SL, Morse RH, Lowry CV. 2007. Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast. Mol Cell Biol 27:2037-2047.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 2037-2047
-
-
Sertil, O.1
Vemula, A.2
Salmon, S.L.3
Morse, R.H.4
Lowry, C.V.5
-
66
-
-
0037414868
-
Regulation of chromatin remodeling by inositol polyphosphates
-
Steger DJ, Haswell ES, Miller AL, Wente SR, O'Shea EK. 2003. Regulation of chromatin remodeling by inositol polyphosphates. Science 299:114-116.
-
(2003)
Science
, vol.299
, pp. 114-116
-
-
Steger, D.J.1
Haswell, E.S.2
Miller, A.L.3
Wente, S.R.4
O'Shea, E.K.5
-
67
-
-
0033538531
-
Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
-
Struhl K. 1999. Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell 98:1-4.
-
(1999)
Cell
, vol.98
, pp. 1-4
-
-
Struhl, K.1
-
68
-
-
0142186231
-
Gcn4 occupancy of open reading frame regions results in the recruitment of chromatin-modifying complexes but not the mediator complex
-
Topalidou I, Thireos G. 2003. Gcn4 occupancy of open reading frame regions results in the recruitment of chromatin-modifying complexes but not the mediator complex. EMBO Rep 4:872-876.
-
(2003)
EMBO Rep
, vol.4
, pp. 872-876
-
-
Topalidou, I.1
Thireos, G.2
-
69
-
-
3142552259
-
Spt3 and Mot1 cooperate in nucleosome remodeling independently of TBP recruitment
-
Topalidou I, Papamichos-Chronakis M, Thireos G, Tzamarias D. 2004. Spt3 and Mot1 cooperate in nucleosome remodeling independently of TBP recruitment. EMBO J 23:1943-1948.
-
(2004)
EMBO J
, vol.23
, pp. 1943-1948
-
-
Topalidou, I.1
Papamichos-Chronakis, M.2
Thireos, G.3
Tzamarias, D.4
-
70
-
-
33744964248
-
Scanning chromatin: A new paradigm?
-
van Holde K, Zlatanova J. 2006. Scanning chromatin: A new paradigm? J Biol Chem 281:12197-12200.
-
(2006)
J Biol Chem
, vol.281
, pp. 12197-12200
-
-
van Holde, K.1
Zlatanova, J.2
-
71
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel PH, Berg OG. 1989. Facilitated target location in biological systems. J Biol Chem 264:675-678.
-
(1989)
J Biol Chem
, vol.264
, pp. 675-678
-
-
von Hippel, P.H.1
Berg, O.G.2
-
72
-
-
0030893061
-
Effects of sin - versions of histone H4 on yeast chromatin structure and function
-
Wechser MA, Kladde MP, Alfieri JA, Peterson CL. 1997. Effects of sin - versions of histone H4 on yeast chromatin structure and function. EMBO J 16:2086-2095.
-
(1997)
EMBO J
, vol.16
, pp. 2086-2095
-
-
Wechser, M.A.1
Kladde, M.P.2
Alfieri, J.A.3
Peterson, C.L.4
-
73
-
-
0033080794
-
Chromatin disruption and modification
-
Wolffe AP, Hayes JJ. 1999. Chromatin disruption and modification. Nucleic Acids Res 27:711-720.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 711-720
-
-
Wolffe, A.P.1
Hayes, J.J.2
-
74
-
-
0033604609
-
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
-
Wyrick JJ, Holstege FC, Jennings EG, Causton HC, Shore D, Grunstein M, Lander ES, Young RA. 1999. Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402:418-421.
-
(1999)
Nature
, vol.402
, pp. 418-421
-
-
Wyrick, J.J.1
Holstege, F.C.2
Jennings, E.G.3
Causton, H.C.4
Shore, D.5
Grunstein, M.6
Lander, E.S.7
Young, R.A.8
-
75
-
-
4744375319
-
Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae
-
Yarragudi A, Miyake T, Li R, Morse RH. 2004. Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae. Mol Cell Biol 24:9152-9164.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 9152-9164
-
-
Yarragudi, A.1
Miyake, T.2
Li, R.3
Morse, R.H.4
-
76
-
-
33846694307
-
Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae
-
Yarragudi A, Parfrey LW, Morse RH. 2007. Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae. Nucleic Acids Res 35:193-202.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 193-202
-
-
Yarragudi, A.1
Parfrey, L.W.2
Morse, R.H.3
-
77
-
-
0032793066
-
Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae
-
Yu L, Morse RH. 1999. Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae. Mol Cell Biol 19:5279-5288.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5279-5288
-
-
Yu, L.1
Morse, R.H.2
-
78
-
-
22744432660
-
Genome-scale identification of nucleosome positions in S. cerevisiae
-
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ. 2005. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309:626-630.
-
(2005)
Science
, vol.309
, pp. 626-630
-
-
Yuan, G.C.1
Liu, Y.J.2
Dion, M.F.3
Slack, M.D.4
Wu, L.F.5
Altschuler, S.J.6
Rando, O.J.7
-
79
-
-
33747351584
-
Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock
-
Zanton SJ, Pugh BF. 2006. Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock. Genes Dev 20:2250-2265.
-
(2006)
Genes Dev
, vol.20
, pp. 2250-2265
-
-
Zanton, S.J.1
Pugh, B.F.2
-
80
-
-
3042551856
-
Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae
-
Zhang Z, Reese JC. 2004. Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae. EMBO J 23:2246-2257.
-
(2004)
EMBO J
, vol.23
, pp. 2246-2257
-
-
Zhang, Z.1
Reese, J.C.2
-
81
-
-
26844489856
-
Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
-
Zhang H, Roberts DN, Cairns BR. 2005. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123:219-231.
-
(2005)
Cell
, vol.123
, pp. 219-231
-
-
Zhang, H.1
Roberts, D.N.2
Cairns, B.R.3
|