-
2
-
-
0028934537
-
Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis
-
Mol CD, Arvai AS, Slupphaug G, et al. Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis. Cell 1995;80:869-878.
-
(1995)
Cell
, vol.80
, pp. 869-878
-
-
Mol, C.D.1
Arvai, A.S.2
Slupphaug, G.3
-
3
-
-
0028959237
-
The structural basis of specific base-excision repair by uracil-DNA glycosylase
-
Sawa R, McAuley-Hecht K, Brown T, Pearl L. The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature 1995;373:487-493.
-
(1995)
Nature
, vol.373
, pp. 487-493
-
-
Sawa, R.1
McAuley-Hecht, K.2
Brown, T.3
Pearl, L.4
-
4
-
-
0029904839
-
A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA
-
Slupphaug G, Mol CD, Kavli B, Arvai AS, Krokan HE, Tainer JA. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature 1996;384:87-92.
-
(1996)
Nature
, vol.384
, pp. 87-92
-
-
Slupphaug, G.1
Mol, C.D.2
Kavli, B.3
Arvai, A.S.4
Krokan, H.E.5
Tainer, J.A.6
-
5
-
-
0032167424
-
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
-
Parikh SS, Mol CD, Slupphaug G, Bharti S, Krokan HE, Tainer JA. Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J 1998;17:5214-5226.
-
(1998)
EMBO J
, vol.17
, pp. 5214-5226
-
-
Parikh, S.S.1
Mol, C.D.2
Slupphaug, G.3
Bharti, S.4
Krokan, H.E.5
Tainer, J.A.6
-
6
-
-
0032529485
-
2-aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects
-
Stivers JT. 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects. Nucleic Acids Res 1998;26:3837-3844.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3837-3844
-
-
Stivers, J.T.1
-
7
-
-
0033579953
-
Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase
-
in press
-
Stivers JT, Pankiewicz KW, Watanabe KA. Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase. Biochemistry 1999;38:in press.
-
(1999)
Biochemistry
, vol.38
-
-
Stivers, J.T.1
Pankiewicz, K.W.2
Watanabe, K.A.3
-
8
-
-
0031961907
-
Direct measurement of the substrate preference of uracil-DNA glycosylase
-
Panayotou G, Brown T, Barlow T, Pearl LH, Savva R. Direct measurement of the substrate preference of uracil-DNA glycosylase. J Biol Chem 1998;273:45-50.
-
(1998)
J Biol Chem
, vol.273
, pp. 45-50
-
-
Panayotou, G.1
Brown, T.2
Barlow, T.3
Pearl, L.H.4
Savva, R.5
-
9
-
-
0024278706
-
Sequence analysis, expression, and conservation of Escherichia coli uracil DNA glycosylase and its gene (ung)
-
Varshney U, Hutcheon T, van de Sande JH. Sequence analysis, expression, and conservation of Escherichia coli uracil DNA glycosylase and its gene (ung). J Biol Chem 1988;263:7776-7784.
-
(1988)
J Biol Chem
, vol.263
, pp. 7776-7784
-
-
Varshney, U.1
Hutcheon, T.2
Van De Sande, J.H.3
-
10
-
-
0017392934
-
DNA N-glycosidases. Properties of uracil-DNA glycosidase from Escherichia coli
-
Lindahl T, Ljungquist S, Siegert W, Nyberg B, Sperens B. DNA N-glycosidases. Properties of uracil-DNA glycosidase from Escherichia coli. J Biol Chem 1977;252:3286-3294.
-
(1977)
J Biol Chem
, vol.252
, pp. 3286-3294
-
-
Lindahl, T.1
Ljungquist, S.2
Siegert, W.3
Nyberg, B.4
Sperens, B.5
-
12
-
-
0003518480
-
-
New York: John Wiley & Sons Inc.;
-
Segel IH. Enzyme kinetics. New York: John Wiley & Sons Inc.; 1975. p 898-902.
-
(1975)
Enzyme Kinetics
, pp. 898-902
-
-
Segel, I.H.1
-
13
-
-
0029902679
-
Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
-
Kuzmic P. Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase. Anal Biochem 1996;237:260-273.
-
(1996)
Anal Biochem
, vol.237
, pp. 260-273
-
-
Kuzmic, P.1
-
14
-
-
84967851020
-
Use of an imaging proportional counter in macromolecular crystallography
-
Howard AJ, Gilliland GL, Finzel BC, Poulos TL, Ohlendorf DH, Salemme FR. Use of an imaging proportional counter in macromolecular crystallography. J Appl Crystallog 1987;20:383-387.
-
(1987)
J Appl Crystallog
, vol.20
, pp. 383-387
-
-
Howard, A.J.1
Gilliland, G.L.2
Finzel, B.C.3
Poulos, T.L.4
Ohlendorf, D.H.5
Salemme, F.R.6
-
15
-
-
84920325457
-
AmoRe: Automated package for molecular replacement
-
Navaza J. AmoRe: automated package for molecular replacement. Acta Crystallogr Sect A 1994;50:157-163.
-
(1994)
Acta Crystallogr Sect A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
16
-
-
84889120137
-
Improved methods for building protein models in electron density maps and location of errors in these models
-
Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M. Improved methods for building protein models in electron density maps and location of errors in these models. Acta Crystallog Sect A 1991;47:110-119.
-
(1991)
Acta Crystallog Sect A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
17
-
-
0030818593
-
Phases-95: A program package for the processing and analysis of diffraction data from macromolecules
-
Carter C, Sweet R, editors. Orlando: Academic Press
-
Furey W, Swaminathan S. PHASES-95: a program package for the processing and analysis of diffraction data from macromolecules. In: Carter C, Sweet R, editors. Macromolecular crystallography (volume 277 of Methods in enzymology). Orlando: Academic Press; 1995. p 590-620.
-
(1995)
Macromolecular Crystallography (Volume 277 of Methods in Enzymology)
, vol.277
, pp. 590-620
-
-
Furey, W.1
Swaminathan, S.2
-
19
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger AT. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature 1992;355:472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
21
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol 1977;112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
22
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
23
-
-
0000913086
-
A fast algorithm for rendering space-filling molecule pictures
-
Bacon D, Anderson WA. A fast algorithm for rendering space-filling molecule pictures. J Mol Graphics 1988;6:219-220.
-
(1988)
J Mol Graphics
, vol.6
, pp. 219-220
-
-
Bacon, D.1
Anderson, W.A.2
-
24
-
-
0028281205
-
Crystal structure of orotate phosphoribosyltransferase
-
Scapin G, Grubmeyer C, Sacchettini JC. Crystal structure of orotate phosphoribosyltransferase. Biochemistry 1994;33:1287-1294.
-
(1994)
Biochemistry
, vol.33
, pp. 1287-1294
-
-
Scapin, G.1
Grubmeyer, C.2
Sacchettini, J.C.3
-
25
-
-
0028083309
-
The crystal structure of human hypoxantine-guanine phosphoribosyltransferase with bound GMP
-
Eads JC, Scapin G, Xu Y, Grubmeyer C, Sacchetini JC. The crystal structure of human hypoxantine-guanine phosphoribosyltransferase with bound GMP. Cell 1994;78:325-334.
-
(1994)
Cell
, vol.78
, pp. 325-334
-
-
Eads, J.C.1
Scapin, G.2
Xu, Y.3
Grubmeyer, C.4
Sacchetini, J.C.5
-
26
-
-
0029919169
-
Three-dimensional structure of the inosine-uridine nucleoside N-ribohydrolase from Crithidia fasciculata
-
Degano M, Gopaul DN, Scapin G, Schramm VL, Sacchettini JC. Three-dimensional structure of the inosine-uridine nucleoside N-ribohydrolase from Crithidia fasciculata. Biochemistry 1996;35: 5971-5981.
-
(1996)
Biochemistry
, vol.35
, pp. 5971-5981
-
-
Degano, M.1
Gopaul, D.N.2
Scapin, G.3
Schramm, V.L.4
Sacchettini, J.C.5
-
27
-
-
0025732374
-
Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase
-
Varshney U, van de Sande JH. Specificities and kinetics of uracil excision from uracil-containing DNA oligomers by Escherichia coli uracil DNA glycosylase. Biochemistry 1991;30:4055-4061.
-
(1991)
Biochemistry
, vol.30
, pp. 4055-4061
-
-
Varshney, U.1
Van De Sande, J.H.2
-
28
-
-
11944256494
-
Catalytic mechanisms of enzymic glycosyl transfer
-
Sinnott ML. Catalytic mechanisms of enzymic glycosyl transfer. Chem Rev 1990;90:1171-1202.
-
(1990)
Chem Rev
, vol.90
, pp. 1171-1202
-
-
Sinnott, M.L.1
-
29
-
-
0028287938
-
Transition state analysis and inhibitor design for enzymatic reactions
-
Schramm VL, Horenstein BA, Kline PC. Transition state analysis and inhibitor design for enzymatic reactions. J Biol Chem 1994;28: 18259-18262.
-
(1994)
J Biol Chem
, vol.28
, pp. 18259-18262
-
-
Schramm, V.L.1
Horenstein, B.A.2
Kline, P.C.3
-
30
-
-
0029983879
-
Mechanistic diagnoses of N-ribohydrolases and purine nucleoside phosphorylase
-
Mazzella LJ, Parkin DW, Tyler PC, Furneaux RH, Schramm VL. Mechanistic diagnoses of N-ribohydrolases and purine nucleoside phosphorylase. J Am Chem Soc 1996;118:2111-2112.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 2111-2112
-
-
Mazzella, L.J.1
Parkin, D.W.2
Tyler, P.C.3
Furneaux, R.H.4
Schramm, V.L.5
-
31
-
-
0032485918
-
Trypanosomal nucleoside hydrolase. A novel mechanism from the structure with a transition-state inhibitor
-
Degamo M, Almo SC, Sacchettini JC, Schramm VL. Trypanosomal nucleoside hydrolase. A novel mechanism from the structure with a transition-state inhibitor. Biochemistry 1998;37:6277-6285.
-
(1998)
Biochemistry
, vol.37
, pp. 6277-6285
-
-
Degamo, M.1
Almo, S.C.2
Sacchettini, J.C.3
Schramm, V.L.4
-
32
-
-
0030986454
-
Unusually strong binding of a designed transition-state analog to a base-excision DNA repair protein
-
Deng L, Schärer OD, Verdine GL. Unusually strong binding of a designed transition-state analog to a base-excision DNA repair protein. J Am Chem Soc 1997;119:7865-7866.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 7865-7866
-
-
Deng, L.1
Schärer, O.D.2
Verdine, G.L.3
-
33
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
Nash HM, Bruner SD, Schärer OD, et al. Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr Biol 1996;6:968-980.
-
(1996)
Curr Biol
, vol.6
, pp. 968-980
-
-
Nash, H.M.1
Bruner, S.D.2
Schärer, O.D.3
-
34
-
-
0038342180
-
Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases
-
Schärer OD, Nash HW, Jiricny J, Laval J, Verdine GL. Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases. J Biol Chem 1998;272:8592-8597.
-
(1998)
J Biol Chem
, vol.272
, pp. 8592-8597
-
-
Schärer, O.D.1
Nash, H.W.2
Jiricny, J.3
Laval, J.4
Verdine, G.L.5
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