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Volumn 3, Issue 3, 2007, Pages 273-288

Quantitative metabolic profiles of tomato flesh and seeds during fruit development: Complementary analysis with ANN and PCA

Author keywords

1H NMR; Fruit; Isoprenoids; Lipids; Metabolic fingerprinting; Metabolomics; Polar metabolites; Seed; Solanum lycopersicum

Indexed keywords

LYCOPERSICON ESCULENTUM; MAGNOLIOPHYTA; SOLANACEAE; SOLANUM;

EID: 34748864089     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-007-0059-1     Document Type: Article
Times cited : (105)

References (59)
  • 1
    • 0033169005 scopus 로고    scopus 로고
    • Concentration measurement by proton NMR using the ERETIC method
    • Akoka S., Barantin L., Trierweiler M. (1999). Concentration measurement by proton NMR using the ERETIC method. Anal. Chem. 71, 2554-2557
    • (1999) Anal. Chem. , vol.71 , pp. 2554-2557
    • Akoka, S.1    Barantin, L.2    Trierweiler, M.3
  • 2
    • 0034930660 scopus 로고    scopus 로고
    • Changes in oligosaccharide content and antioxidant enzyme activities in developing bean seeds as related to acquisition of drying tolerance and seed quality
    • Bailly C., Audigier C., Ladonne F., Wagner M.H., Coste F., Corbineau F., Come D. (2001). Changes in oligosaccharide content and antioxidant enzyme activities in developing bean seeds as related to acquisition of drying tolerance and seed quality. J. Exp. Bot. 52, 701-708
    • (2001) J. Exp. Bot. , vol.52 , pp. 701-708
    • Bailly, C.1    Audigier, C.2    Ladonne, F.3    Wagner, M.H.4    Coste, F.5    Corbineau, F.6    Come, D.7
  • 3
    • 0036487177 scopus 로고    scopus 로고
    • An integrated overview of seed development in Arabidopsis thaliana ecotype WS
    • Baud S., Boutin J.P., Miquel M., Lepiniec L., Rochat C. (2002). An integrated overview of seed development in Arabidopsis thaliana ecotype WS. Plant Physiol. Biochem. 40, 151-160
    • (2002) Plant Physiol. Biochem , vol.40 , pp. 151-160
    • Baud, S.1    Boutin, J.P.2    Miquel, M.3    Lepiniec, L.4    Rochat, C.5
  • 4
    • 0005655078 scopus 로고
    • A role for the surrounding fruit tissues in preventing the germination of tomato (Lycopersicon esculentum) seeds
    • Berry T., Bewley J.D. (1992). A role for the surrounding fruit tissues in preventing the germination of tomato (Lycopersicon esculentum) seeds. Plant Physiol. 100, 951-957
    • (1992) Plant Physiol. , vol.100 , pp. 951-957
    • Berry, T.1    Bewley, J.D.2
  • 6
    • 0034623487 scopus 로고    scopus 로고
    • Changes in amino acid composition and nitrogen metabolizing enzymes in ripening fruits of Lycopersicon esculentum Mill
    • Boggio S.B., Palatnik J.F., Heldt H.W., Valle E.M. (2000). Changes in amino acid composition and nitrogen metabolizing enzymes in ripening fruits of Lycopersicon esculentum Mill. Plant Sci. 159, 125-133
    • (2000) Plant Sci. , vol.159 , pp. 125-133
    • Boggio, S.B.1    Palatnik, J.F.2    Heldt, H.W.3    Valle, E.M.4
  • 7
    • 0022608640 scopus 로고
    • Fatty acid composition of leaf lipids determined after combined digestion and fatty acid methyl ester formation from fresh tissue
    • Browse J., McCourt P.J., Somerville C.R. (1986). Fatty acid composition of leaf lipids determined after combined digestion and fatty acid methyl ester formation from fresh tissue. Anal. Biochem. 152, 141-145
    • (1986) Anal. Biochem , vol.152 , pp. 141-145
    • Browse, J.1    McCourt, P.J.2    Somerville, C.R.3
  • 8
    • 0037373536 scopus 로고    scopus 로고
    • Identification and quantification of carotenoids, tocopherols and chlorophylls in commonly consumed fruits and vegetables
    • Burns J., Fraser P.D., Bramley P.M. (2003). Identification and quantification of carotenoids, tocopherols and chlorophylls in commonly consumed fruits and vegetables. Phytochemistry 62, 939-947
    • (2003) Phytochemistry , vol.62 , pp. 939-947
    • Burns, J.1    Fraser, P.D.2    Bramley, P.M.3
  • 11
    • 33645001375 scopus 로고    scopus 로고
    • Cell expansion and endoreduplication show a large genetic variability in pericarp and contribute strongly to tomato fruit growth
    • Cheniclet C., Rong W.Y., Causse M., Frangne N., Bolling L., Carde J.P., Renaudin J.P. (2005). Cell expansion and endoreduplication show a large genetic variability in pericarp and contribute strongly to tomato fruit growth. Plant Physiol. 139, 1984-1994
    • (2005) Plant Physiol. , vol.139 , pp. 1984-1994
    • Cheniclet, C.1    Rong, W.Y.2    Causse, M.3    Frangne, N.4    Bolling, L.5    Carde, J.P.6    Renaudin, J.P.7
  • 14
    • 0347926086 scopus 로고    scopus 로고
    • Expression of a galactinol synthase gene in tomato seeds is up-regulated before maturation desiccation and again after imbibition whenever radicle protrusion is prevented
    • Downie B., Gurusinghe S., Dahal P., Thacker R.R., Snyder J.C., Nonogaki H., Yim K., Fukanaga K., Alvarado V., Bradford K.J. (2003). Expression of a galactinol synthase gene in tomato seeds is up-regulated before maturation desiccation and again after imbibition whenever radicle protrusion is prevented. Plant Physiol. 131, 1347-1359
    • (2003) Plant Physiol. , vol.131 , pp. 1347-1359
    • Downie, B.1    Gurusinghe, S.2    Dahal, P.3    Thacker, R.R.4    Snyder, J.C.5    Nonogaki, H.6    Yim, K.7    Fukanaga, K.8    Alvarado, V.9    Bradford, K.J.10
  • 15
    • 0001413420 scopus 로고    scopus 로고
    • Metabolite profiling by one- and two-dimensional NMR analysis of complex mixtures
    • Fan T.W.M. (1996). Metabolite profiling by one- and two-dimensional NMR analysis of complex mixtures. Prog. Nucl. Magn. Reson. Spectrosc. 28, 161-219
    • (1996) Prog. Nucl. Magn. Reson. Spectrosc , vol.28 , pp. 161-219
    • Fan, T.W.M.1
  • 16
    • 0034322065 scopus 로고    scopus 로고
    • Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids
    • Fraser P.D., Pinto E.S., Holloway D.E., Bramley P.M. (2000). Application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids. Plant J. 24, 551-558
    • (2000) Plant J. , vol.24 , pp. 551-558
    • Fraser, P.D.1    Pinto, E.S.2    Holloway, D.E.3    Bramley, P.M.4
  • 19
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening
    • Giovannoni J.J. (2004). Genetic regulation of fruit development and ripening. Plant Cell 16, S170-S180
    • (2004) Plant Cell , vol.16
    • Giovannoni, J.J.1
  • 20
    • 0035673991 scopus 로고    scopus 로고
    • A comparison of self-organizing map algorithm and some conventional statistical methods for ecological community ordination
    • Giraudel J.L., Lek S. (2001). A comparison of self-organizing map algorithm and some conventional statistical methods for ecological community ordination. Ecol. Modell. 146, 329-339
    • (2001) Ecol. Modell , vol.146 , pp. 329-339
    • Giraudel, J.L.1    Lek, S.2
  • 21
    • 0000938865 scopus 로고
    • Cell wall metabolism in ripening fruit. V Analysis of cell wall synthesis in ripening tomato pericarp tissue using a D-[U- 13 C] glucose tracer and gas chromatography-mass-spectrometry
    • Greve L.C., Labavitch J.M. (1991). Cell wall metabolism in ripening fruit. V Analysis of cell wall synthesis in ripening tomato pericarp tissue using a D-[U- 13 C] glucose tracer and gas chromatography-mass-spectrometry. Plant Physiol. 97, 1456-1461
    • (1991) Plant Physiol , vol.97 , pp. 1456-1461
    • Greve, L.C.1    Labavitch, J.M.2
  • 22
    • 0001566952 scopus 로고
    • Carbohydrate changes during maturation of cucumber seeds
    • Handley L.W., Pharr M., McFeeters F. (1983). Carbohydrate changes during maturation of cucumber seeds. Plant Physiol. 72, 498-502
    • (1983) Plant Physiol. , vol.72 , pp. 498-502
    • Handley, L.W.1    Pharr, M.2    McFeeters, F.3
  • 23
    • 0031820826 scopus 로고    scopus 로고
    • The tomato seed as a model system to study seed development and germination
    • Hilhorst H.W.M., Groot S.P.C., Bino R.J. (1998). The tomato seed as a model system to study seed development and germination. Acta Bot. Neerl. 47, 169-183
    • (1998) Acta Bot. Neerl. , vol.47 , pp. 169-183
    • Hilhorst, H.W.M.1    Groot, S.P.C.2    Bino, R.J.3
  • 24
    • 4544249973 scopus 로고    scopus 로고
    • Myo-inositol and sucrose concentrations affect the accumulation of raffinose family oligosaccharides in seeds
    • Karner U., Peterbauer T., Raboy V., Jones D.A., Hedley C.L., Richter A. (2004). Myo-inositol and sucrose concentrations affect the accumulation of raffinose family oligosaccharides in seeds. J. Exp. Bot. 55, 1981-1987
    • (2004) J. Exp. Bot. , vol.55 , pp. 1981-1987
    • Karner, U.1    Peterbauer, T.2    Raboy, V.3    Jones, D.A.4    Hedley, C.L.5    Richter, A.6
  • 25
    • 0029026637 scopus 로고
    • Eukaryotic phospholipid biosynthesis
    • Kent C. (1995). Eukaryotic phospholipid biosynthesis. Annu. Rev. Biochem. 64, 315-343
    • (1995) Annu. Rev. Biochem , vol.64 , pp. 315-343
    • Kent, C.1
  • 26
    • 18944365242 scopus 로고    scopus 로고
    • Analyses of tomato peel and seed byproducts and their use as a source of carotenoids
    • Knoblich M., Anderson B., Latshaw D. (2005). Analyses of tomato peel and seed byproducts and their use as a source of carotenoids. J. Sci. Food Agric. 85, 1166-1170
    • (2005) J. Sci. Food Agric. , vol.85 , pp. 1166-1170
    • Knoblich, M.1    Anderson, B.2    Latshaw, D.3
  • 28
    • 0000440206 scopus 로고
    • Carbohydrates, U.V. methods with hexokinase and glucose-6-phosphate dehydrogenase
    • in Bergmeyer H.U. (ed) (Third ed.), VI, Metabolites I. Verlag Chemie, Basel
    • Kunst A., Draeger B., Ziegenhorn J. (1984). Carbohydrates, U.V. methods with hexokinase and glucose-6-phosphate dehydrogenase in Bergmeyer H.U. (ed) Methods in Enzymatic Analysis, (Third ed.), VI, Metabolites I. Verlag Chemie, Basel. pp. 163-172
    • (1984) Methods in Enzymatic Analysis , pp. 163-172
    • Kunst, A.1    Draeger, B.2    Ziegenhorn, J.3
  • 29
    • 0037462046 scopus 로고    scopus 로고
    • Metabolite profiling of tomato (Lycopersicon esculentum) using H-1 NMR spectroscopy as a tool to detect potential unintended effects following a genetic modification
    • Le Gall G., Colquhoun I.J., Davis A.L., Collins G.J., Verhoeyen M.E. (2003). Metabolite profiling of tomato (Lycopersicon esculentum) using H-1 NMR spectroscopy as a tool to detect potential unintended effects following a genetic modification. J. Agric. Food Chem. 51, 2447-2456
    • (2003) J. Agric. Food Chem. , vol.51 , pp. 2447-2456
    • Le Gall, G.1    Colquhoun, I.J.2    Davis, A.L.3    Collins, G.J.4    Verhoeyen, M.E.5
  • 31
    • 0035796127 scopus 로고    scopus 로고
    • Pattern recognition methods and applications in biomedical magnetic resonance
    • Lindon J.C., Holmes E., Nicholson J.K. (2001). Pattern recognition methods and applications in biomedical magnetic resonance. Prog. Nucl. Magn. Reson. Spectrosc. 39, 1-40
    • (2001) Prog. Nucl. Magn. Reson. Spectrosc , vol.39 , pp. 1-40
    • Lindon, J.C.1    Holmes, E.2    Nicholson, J.K.3
  • 32
    • 33845664519 scopus 로고    scopus 로고
    • Nuclear magnetic resonance spectroscopy-based metabolite profiling of transgenic tomato fruit engineered to accumulate spermidine and spermine reveals enhanced anabolic and nitrogen-carbon interactions
    • Mattoo A.K., Sobolev A.P., Neelam A., Goyal R.K., Handa A.K., Segre A.L. (2006). Nuclear magnetic resonance spectroscopy-based metabolite profiling of transgenic tomato fruit engineered to accumulate spermidine and spermine reveals enhanced anabolic and nitrogen-carbon interactions. Plant Physiol. 142, 1769-1770
    • (2006) Plant Physiol. , vol.142 , pp. 1769-1770
    • Mattoo, A.K.1    Sobolev, A.P.2    Neelam, A.3    Goyal, R.K.4    Handa, A.K.5    Segre, A.L.6
  • 33
    • 0034162664 scopus 로고    scopus 로고
    • All fatty acids are not equal: Discrimination in plant membrane lipids
    • Millar A.A., Smith M.A., Kunst L. (2000). All fatty acids are not equal: discrimination in plant membrane lipids. Trends Plant Sci. 5, 95-101
    • (2000) Trends Plant Sci. , vol.5 , pp. 95-101
    • Millar, A.A.1    Smith, M.A.2    Kunst, L.3
  • 34
    • 0036158872 scopus 로고    scopus 로고
    • Trigonelline: A diverse regulator in plants
    • Minorsky P.V. (2002). Trigonelline: A diverse regulator in plants. Plant Physiol. 128, 7-8
    • (2002) Plant Physiol. , vol.128 , pp. 7-8
    • Minorsky, P.V.1
  • 37
    • 26944471174 scopus 로고    scopus 로고
    • The next wave in metabolome analysis
    • Nielsen J., Oliver S. (2005). The next wave in metabolome analysis. Trends Biotechnol. 23, 544-546
    • (2005) Trends Biotechnol , vol.23 , pp. 544-546
    • Nielsen, J.1    Oliver, S.2
  • 38
    • 1642491765 scopus 로고    scopus 로고
    • Developmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits
    • Obiadalla-Ali H., Fernie A.R., Kossmann J., Lloyd J.R. (2004). Developmental analysis of carbohydrate metabolism in tomato (Lycopersicon esculentum cv. Micro-Tom) fruits. Physiol. Plant. 120, 196-204
    • (2004) Physiol. Plant. , vol.120 , pp. 196-204
    • Obiadalla-Ali, H.1    Fernie, A.R.2    Kossmann, J.3    Lloyd, J.R.4
  • 39
    • 0141818068 scopus 로고    scopus 로고
    • Hormonal interactions in fruit development
    • Ozga J.A., Reinecke D.M. (2003). Hormonal interactions in fruit development. J. Plant Growth Regul. 22, 73-81
    • (2003) J. Plant Growth Regul. , vol.22 , pp. 73-81
    • Ozga, J.A.1    Reinecke, D.M.2
  • 41
    • 0141787875 scopus 로고    scopus 로고
    • Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development
    • Roessner-Tunali U., Hegemann B., Lytovchenko A., Carrari F., Bruedigam C., Granot D., Fernie A.R. (2003). Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiol. 133, 84-99
    • (2003) Plant Physiol. , vol.133 , pp. 84-99
    • Roessner-Tunali, U.1    Hegemann, B.2    Lytovchenko, A.3    Carrari, F.4    Bruedigam, C.5    Granot, D.6    Fernie, A.R.7
  • 43
    • 0004282518 scopus 로고
    • Sas Institute Guide Version 6, SAS Institute Inc., Cary, NC
    • Sas Institute (1990). SAS/STAT User's Guide, Version 6, SAS Institute Inc., Cary, NC
    • (1990) SAS/STAT User's
  • 44
    • 0030888543 scopus 로고    scopus 로고
    • Sucrose-to-starch metabolism in tomato fruit undergoing transient starch accumulation
    • Schaffer A.A., Petreikov M. (1997). Sucrose-to-starch metabolism in tomato fruit undergoing transient starch accumulation. Plant Physiol. 113, 739-746
    • (1997) Plant Physiol. , vol.113 , pp. 739-746
    • Schaffer, A.A.1    Petreikov, M.2
  • 45
    • 13244297050 scopus 로고    scopus 로고
    • Metabolic profiling of leaves and fruit of wild species tomato: A survey of the Solanum lycopersicum complex
    • Schauer N., Zamir D., Fernie A.R. (2005). Metabolic profiling of leaves and fruit of wild species tomato: A survey of the Solanum lycopersicum complex. J. Exp. Bot. 56, 297-307
    • (2005) J. Exp. Bot. , vol.56 , pp. 297-307
    • Schauer, N.1    Zamir, D.2    Fernie, A.R.3
  • 46
    • 2442434678 scopus 로고    scopus 로고
    • Nucleotide sugar interconversions and cell wall biosynthesis: How to bring the inside to the outside
    • Seifert G.J. (2004). Nucleotide sugar interconversions and cell wall biosynthesis: How to bring the inside to the outside. Curr. Opin. Plant Biol. 7, 277-284
    • (2004) Curr. Opin. Plant Biol. , vol.7 , pp. 277-284
    • Seifert, G.J.1
  • 48
    • 34748870545 scopus 로고    scopus 로고
    • Tomato: A model species for Solanaceae genomics in Morot-Gaudry
    • J.F., Lea, P. and Briat J.F. (Eds) INRA, Paris
    • Stevens, R., Bouzayen, M., Causse, M., Etienne, C. and Rothan, C. (2007). Tomato: A model species for Solanaceae genomics in Morot-Gaudry, J.F., Lea, P. and Briat J.F. (Eds), Functional Plant Genomics. INRA, Paris, pp. 443-461.
    • (2007) Functional Plant Genomics , pp. 443-461
    • Stevens, R.1    Bouzayen, M.2    Causse, M.3    Etienne, C.4    Rothan, C.5
  • 49
    • 0034817094 scopus 로고    scopus 로고
    • Galactosyl-sucrose oligosaccharides and potential longevity of primed seeds
    • Sunitha G., Bradford K.J. (2001). Galactosyl-sucrose oligosaccharides and potential longevity of primed seeds. Seed Sci. Res. 11, 121-133
    • (2001) Seed Sci. Res. , vol.11 , pp. 121-133
    • Sunitha, G.1    Bradford, K.J.2
  • 50
    • 23044510825 scopus 로고    scopus 로고
    • Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period
    • doi:10.1186/1471-2229-5-8
    • Tarpley, L., Duran, A.L., Kebrom, T.H. and Sumner, L.W. (2005). Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period. BMC Plant Biol. 5, doi:10.1186/ 1471-2229-5-8
    • (2005) BMC Plant Biol. , vol.5
    • Tarpley, L.1    Duran, A.L.2    Kebrom, T.H.3    Sumner, L.W.4
  • 52
    • 15744376056 scopus 로고    scopus 로고
    • Antioxidant activity in different fractions of tomatoes
    • Toor R.K., Savage G.P. (2005). Antioxidant activity in different fractions of tomatoes. Food Res. Intern. 38, 487-494
    • (2005) Food Res. Intern. , vol.38 , pp. 487-494
    • Toor, R.K.1    Savage, G.P.2
  • 53
    • 0031896832 scopus 로고    scopus 로고
    • Free amino acid composition of phloem sap and growing fruit of Lycopersicon esculentum
    • Valle E.M., Boggio S.B., Heldt H.W. (1998). Free amino acid composition of phloem sap and growing fruit of Lycopersicon esculentum. Plant Cell Physiol. 39, 458-461 458-461
    • (1998) Plant Cell Physiol. , vol.39 , pp. 458-461
    • Valle, E.M.1    Boggio, S.B.2    Heldt, H.W.3
  • 54
    • 0034834380 scopus 로고    scopus 로고
    • A rapid and inexpensive microplate assay for the enzymatic determination of glucose, fructose, sucrose, l -malate and citrate in tomato (Lycopersicon esculentum) extracts and in orange juice
    • Velterop J.S., Vos F. (2001). A rapid and inexpensive microplate assay for the enzymatic determination of glucose, fructose, sucrose, l -malate and citrate in tomato (Lycopersicon esculentum) extracts and in orange juice. Phytochem. Anal. 12, 299-304
    • (2001) Phytochem. Anal. , vol.12 , pp. 299-304
    • Velterop, J.S.1    Vos, F.2
  • 56
    • 0001611602 scopus 로고
    • Changes in the steryl lipid content and composition of tomato fruit during ripening
    • Whitaker B.D. (1988). Changes in the steryl lipid content and composition of tomato fruit during ripening. Phytochemistry 27, 3411-3416
    • (1988) Phytochemistry , vol.27 , pp. 3411-3416
    • Whitaker, B.D.1
  • 57
    • 0036794670 scopus 로고    scopus 로고
    • Recent advances in fruit development and ripening: An overview
    • White P.J. (2002). Recent advances in fruit development and ripening: An overview. J. Exp. Bot. 53, 1995-2000
    • (2002) J. Exp. Bot. , vol.53 , pp. 1995-2000
    • White, P.J.1
  • 58
    • 0001146857 scopus 로고
    • Sink metabolism in tomato fruit. III. Analysis of carbohydrate assimilation in a wild species
    • Yelle S., Hewitt J.D., Robinson N.L., Damon S., Bennett A. (1988). Sink metabolism in tomato fruit. III. Analysis of carbohydrate assimilation in a wild species. Plant Physiol. 87, 737-740
    • (1988) Plant Physiol. , vol.87 , pp. 737-740
    • Yelle, S.1    Hewitt, J.D.2    Robinson, N.L.3    Damon, S.4    Bennett, A.5
  • 59
    • 0034829812 scopus 로고    scopus 로고
    • Absence of a clear relationship between lipid pathway enzymes and volatile compounds in fresh tomatoes
    • Yilmaz E., Tandon K.S., Scott J.W., Baldwin E.A., Shewfelt R.L. (2001). Absence of a clear relationship between lipid pathway enzymes and volatile compounds in fresh tomatoes. J. Plant Physiol. 158, 1111-1116
    • (2001) J. Plant Physiol. , vol.158 , pp. 1111-1116
    • Yilmaz, E.1    Tandon, K.S.2    Scott, J.W.3    Baldwin, E.A.4    Shewfelt, R.L.5


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