Increased recombination between active tRNA genes

DNA and Cell Biology

Volumn 25, Issue 6, 2006, Pages 359-364

  Pratt Hyatt, Matthew J ^a   Kapadia, Kevin M ^a   Wilson, Thomas E ^a   Engelke, David R ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; RNA POLYMERASE II; TRANSFER RNA;

ARTICLE; CONTROLLED STUDY; DIRECT TERMINAL REPEAT; EUKARYOTE; GENE CLUSTER; GENE DELETION; GENETIC RECOMBINATION; GENETIC TRANSCRIPTION; GENOME; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOLUS; PRIORITY JOURNAL; RETROPOSON; RNA GENE; SACCHAROMYCES CEREVISIAE; SURVIVAL;

RECOMBINATION, GENETIC; RETROELEMENTS; RNA, FUNGAL; RNA, TRANSFER; SACCHAROMYCES CEREVISIAE;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 33745467549     PISSN: 10445498     EISSN: None     Source Type: Journal    
DOI: 10.1089/dna.2006.25.359     Document Type: Article

References (43)

1. AGUILERA, A. (2002). The connection between transcription and genomic instability. EMBO J. 21, 195-201.
2. ALLISON, D.S., GOH, S.H., and HALL, B.D. (1983). The promoter sequence of a yeast tRNA tyr gene. Cell 34, 655-664.
3. BILANCHONE, V.W., CLAYPOOL, J.A., KINSEY, P.T., and SANDMEYER, S.B. (1993). Positive and negative regulatory elements control expression of the yeast retrotransposon Ty3. Genetics 136, 685-700.
4. BOLTON, E. C. and BOEKE, J.D. (2003). Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: A genomic point of view. Genome Res. 13, 254-263.
5. CHALKER, D.L., and SANDMEYER, S.B. (1992). Ty3 integrates within the region of RNA polymerase III transcription initiation. Genes Dev. 6, 117-128.
6. DESHPANDE, A.M., and NEWLON, C.S. (1996). DNA replication fork pause sites dependent on transcription. Science 272, 1030-1033.
7. DUJON, B., SHERMAN, D., FISCHER, G., DURRENS, P., CASAREGOLA, S., LAFONTAINE, I., DE MONTIGNY, J., MARCK, C., NEUVEGLISE, C., TALLA, E., et al. (2004). Genome evolution in yeast. Nature 430, 35-44.
8. ELDER, J.T., PAN. J., DUNCAN, C.H., and WEISSMAN, S.M. (1981). Transcriptional analysis of interspersed repetitive polymerase III transcription units in human DNA. Nucleic Acids Res. 9, 1171-1189.
9. FISHMAN-LOBELL, J., RUDIN, N., and HABER, J.E. (1992). Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated. Mol. Cell. Biol. 12, 1291-1303.
10. FORNACE, A.J., JR., and MITCHELL, J.B. (1986). Induction of B2 RNA polymerase III transcription by heat shock: Enrichment for heat shock induced sequences in rodent cells by hybridization subtraction. Nucleic Acids Res. 14, 5793-5811.
11. GILBERT, N., and LABUDA, D. (2000). Evolutionary inventions and continuity of CORE-SINEs in mammals. J. Mol. Biol. 5, 365-377.
12. HABER, J.E., and LEUNG, W.Y. (1996). Lack of chromosome territoriality in yeast: Promiscuous rejoining of broken chromosome ends. Proc. Natl. Acad. Sci. USA 93, 13949-13954.
13. HANI, J., and FELDMANN, H. (1998). (RNA genes and retroelcments in the yeast genome. Nucleic Acids Res. 26, 689-696.
14. HUIBREGTSE, J.M., and ENGELKE, D.R. (1939). Genomic fool-printing of a yeast tRNA gene reveals stable complexes over the 5′-flanking region. Mol. Cell. Biol. 9, 3244-3252.
15. HULL, M., ERICKSON, J., JOHNSTON, M., and ENGELKE, D.R. (1994). tRNA genes as transcriptional repressor elements. Mol. Cell. Biol. 14, 1266-1277.
16. IVANOV, E.L., SUGAWARA, N., FISHMAN-LOBELL, J., and HABER, J.E. (1996). Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae. Genetics 142, 693-704.
17. JACKSON, J.A., and FINK, G.R. (1981). Gene conversion between duplicated genetic elements in yeast. Nature 292, 306-311.
18. JURKA, J. (2004). Evolutionary impact of human Alu repetitive elements. Curr. Opin. Genet. Dev. 14, 603-608.
19. KENDALL, A., HULL, M.W., BERTRAND, E., SINGER, P.D., and ENGELKE, D.R. (2000). A CBFS mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing. Proc. Natl. Acad. Sci. USA 97, 13108-13113.
20. KINSEY, P.T., and SANDMEYER, S.B. (1991). Adjacent pol II and pol III promoters: Transcription of the yeast retrotransposon Ty3 and a target tRNA gene. Nucleic Acids Res. 19, 1317-1324.
21. KOSKI, R.A., and CLARKSON, S.G. (1982). Synthesis and maturation of Xenopus laevis methionine tRNA transcripts in homologous cell-free extracts. J. Biol. Chem. 257, 4514-4521.
22. LIU, W.M., and SCHMID, C.W. (1993). Proposed roles for DNA methylation in Alu transcriptional repression and mutational inactivation. Nucleic Acids Res. 21, 1351-1359.
23. LIU, W.M., CHU, W.M., CHOUDARY, P.V., and SCHMID, C.W. (1995). Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts. Nucleic Acids Res. 23, 1758-1765.
24. LONGTINE, M.S., MCKENZIE A., III, DEMARINI, D.J., SHAH, N.G., WACH, A., BRACHAT, P., PHILIPPSEN, A., and PRINGLE, J.R. (1998). Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14, 953-961.
25. LUKASOVA, E., KOZUBEK, S., KOZUBEK, M., KJERONSAK, J., RYZNAR, L., HORAKOVA, J., KRAHULCOVA, E., and HORNECK, G. (1997). Localization and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukemia. Hum. Genet. 100, 525-535.
26. MCDONALD, J.P., and ROTHSTEIN, R. (1994). Unrepaired heteroduplex DNA in Saccharomyces cerevisiae is decreased in RAD1, RAD52-independent recombination. Genetics 137, 393-405.
27. MUNZ, P., AMSTUTZ, H., KOHLI, J., and LEUPOLD, U. (1982). Recombination between dispersed serine tRNA genes in Schizosaccharomyces pombe. Nature 300, 225-231.
28. NEVES, H., RAMOS, C., DA SIVA, M.G., PARREIRA, A., and PARREIRA L. (1999). The nuclear topography of AMB, BCR, PML, and RAR genes: Evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation. Blood 93, 1197-1207.
29. NEWMAN, A.J., OGDEN, R.C., and ABELSON, J. (1983). tRNA gene transcription in yeast: effects of specified base substitutions in the intragenic promoter. Cell 35, 117-125.
30. OZENBERGER, B.A., and ROEDER, G.S. (1991). A unique pathway of double-strand break repair operates in tandemly repeated genes. Mol. Cell. Biol. 11, 1222-1231.
31. PAVLICEK, A., NOSKOV, V.N., KOUPRINA, N., BARRETT, J.C., JURKA, J., and LARIONOV, V. (2004). Evolution of the tumor suppressor BRCA1 locus in primates: implication for cancer predisposition. Hum. Mol. Genet. 13, 2727-2751.
32. PRADO, F., and AGUILERA, A. (1995). Role of reciprocal exchange, one ended invasion crossover and single-strand annealing on inverted and direct repeat recombination in yeast: Different requirements for the RAD1, RAD10. Genetics 139, 109-123.
33. PRADO, F., CORTES-LEDESMA, F., HUERTAS, P., and AGUILERA, A. (2003). Mitotic recombination in Saccharomyces cerevisiae. Curr. Genet. 42, 185-198.
34. PUGET, N., STOPPA-LYONNET, D., SINILNKOVA, O.M., PAGE, S., LYNCH, H.T., LENOIR, S., and MAZOYER, G.M. (1999). Screening for germ-line rearrangements and regulatory mutations in BRCA1 led to the identification of four new deletions. Cancer Res. 59, 455-461.
35. RATTRAY, A.J., and SYMINGTON, L.S. (1995). Multiple pathways for homologous recombination in Saccharomyces cerevisiae. Genetics 139, 45-56.
36. ROHLFS, E.M., PUGET, N., GRAHAM, M.L., WEBER, B.L., GARBER, J.E., SKRZYNIA, C., HALPERIN, J.L., LENOIR, G.M., SILVERMAN, L.M., and MAZOYER. S. (2000). An Alu-mediated 7.1 kb deletion of BRCA 1 exon 8 and 9 in breast and overian cancer families that results in alternative splicing of exon 10. Genes Chromosomes Cancer 28, 300-307.
37. ROIX, J.J., MCQUEEN, P.C., MUNSON, P.J., PARADA, L.A., and MISTELI, T. (2003). Spatial proximity of translocation-prone gene loci in human lymphomas. Nat. Genet. 34, 287-291.
38. ROSE, M.D., WINSTON, F., and HIETER, P. (1990). Methods in Yeast Genetics: A Laboratory Course Manual (Cold Spring Harbor Press. Cold Spring Harbor, NY).
39. SMITH, T.M., LEE, M.K., SZABO, C.I., JEROME, N., McEUEN, M., TAYLOR, M., HOOD, L., and KING, M.C. (1996). Complete genomic sequence and analysis of 117 kb of human DNA containing the gene BRCA1. Genome Res. 6, 1029-1049.
40. THOMPSON, M., HAEUSLER, R.A., GOOD, P.D., and ENGELKE, D.R. (2003). Nucleolar clustering of dispersed tRNA genes. Science 302, 1399-1401.
41. TOURNIER, I., PAILLERETS, B.B., SOBOL, H., STOPPA-LYONNET, D., LIDEREAU, R., BARROIS, S., MAZOYER, M., COULET, F., HARDOUIN, A., CHOMPRET, A., et al. (2004). Significant contribution of germlinc BRCA2 rearrangements in male breast cancer families. Cancer Res. 64, 8143-8147.
42. WILSON, E.T., LARSON, D., YOUNG, L.S., and SPRAGUE, K.U. (1985). A large region controls tRNA transcription. J. Mol. Biol. 183, 153-163.
43. ZOU, S., WRIGHT, D.A., and VOYTAS, D.F. (1995). The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci. Genes Dev. 10, 634-645.