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Volumn 16, Issue 8, 2007, Pages 1676-1688

The solution structure of ParD, the antidote of the ParDE toxin-antitoxin module, provides the structural basis for DNA and toxin binding

Author keywords

Bacterial programmed cell death; Homodimeric protein; Intermonomer NOEs; NMR spectroscopy; Ribbon helix helix; Toxin antitoxin systems

Indexed keywords

ANTIDOTE; ANTITOXIN; BACTERIAL PROTEIN; BACTERIAL TOXIN; HELIX LOOP HELIX PROTEIN; PROTEIN PARD; PROTEIN PARDE; UNCLASSIFIED DRUG;

EID: 34547564386     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.062680707     Document Type: Article
Times cited : (59)

References (72)
  • 1
    • 1542472730 scopus 로고    scopus 로고
    • New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system
    • doi: 10.1186/gb-2003-4-12-r81
    • Anantharaman, V. and Aravind, L. 2003. New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol. 4: R81. doi: 10.1186/gb-2003-4-12-r81.
    • (2003) Genome Biol , vol.4
    • Anantharaman, V.1    Aravind, L.2
  • 2
    • 23044469885 scopus 로고    scopus 로고
    • The PIN-domain toxin-antitoxin array in mycobacteria
    • Arcus, V.L., Rainey, P.B., and Turner, S.J. 2005. The PIN-domain toxin-antitoxin array in mycobacteria. Trends Microbiol. 13: 360-365.
    • (2005) Trends Microbiol , vol.13 , pp. 360-365
    • Arcus, V.L.1    Rainey, P.B.2    Turner, S.J.3
  • 4
    • 0029741707 scopus 로고    scopus 로고
    • Positive selection of recombinant DNA by CcdB
    • Bernard, P. 1996. Positive selection of recombinant DNA by CcdB. Biotechniques 21: 320-323.
    • (1996) Biotechniques , vol.21 , pp. 320-323
    • Bernard, P.1
  • 5
    • 0025761119 scopus 로고
    • The 41 carboxy-terminal residues of the miniF plasmid CcdA protein are sufficient to antagonize the killer activity of the CcdB protein
    • Bernard, P. and Couturier, M. 1991. The 41 carboxy-terminal residues of the miniF plasmid CcdA protein are sufficient to antagonize the killer activity of the CcdB protein. Mol. Gen. Genet. 226: 297-304.
    • (1991) Mol. Gen. Genet , vol.226 , pp. 297-304
    • Bernard, P.1    Couturier, M.2
  • 6
    • 0025336625 scopus 로고
    • Structure of Arc repressor in solution: Evidence for a family of β-sheet DNA-binding proteins
    • Breg, J.N., van Opheusden, J.H., Burgering, M.J., Boelens, R., and Kaptein, R. 1990. Structure of Arc repressor in solution: Evidence for a family of β-sheet DNA-binding proteins. Nature 346: 586-589.
    • (1990) Nature , vol.346 , pp. 586-589
    • Breg, J.N.1    van Opheusden, J.H.2    Burgering, M.J.3    Boelens, R.4    Kaptein, R.5
  • 9
    • 27944437497 scopus 로고    scopus 로고
    • Toxin-antitoxin modules as bacterial metabolic stress managers
    • Buts, L., Lah, J., Dao-Thi, M.H., Wyns, L., and Loris, R. 2005. Toxin-antitoxin modules as bacterial metabolic stress managers. Trends Biochem. Sci. 30: 672-679.
    • (2005) Trends Biochem. Sci , vol.30 , pp. 672-679
    • Buts, L.1    Lah, J.2    Dao-Thi, M.H.3    Wyns, L.4    Loris, R.5
  • 10
    • 1542379603 scopus 로고    scopus 로고
    • The YefM antitoxin defines a family of natively unfolded proteins: Implications as a novel antibacterial target
    • Cherny, I. and Gazit, E. 2004. The YefM antitoxin defines a family of natively unfolded proteins: Implications as a novel antibacterial target. J. Biol. Chem. 279: 8252-8261.
    • (2004) J. Biol. Chem , vol.279 , pp. 8252-8261
    • Cherny, I.1    Gazit, E.2
  • 11
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • Connolly, M.L. 1983. Solvent-accessible surfaces of proteins and nucleic acids. Science 221: 709-713.
    • (1983) Science , vol.221 , pp. 709-713
    • Connolly, M.L.1
  • 12
    • 0033003335 scopus 로고    scopus 로고
    • Protein backbone angle restraints from searching a database for chemical shift and sequence homology
    • Cornilescu, G., Delaglio, F., and Bax, A. 1999. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13: 289-302.
    • (1999) J. Biomol. NMR , vol.13 , pp. 289-302
    • Cornilescu, G.1    Delaglio, F.2    Bax, A.3
  • 13
    • 0034705331 scopus 로고    scopus 로고
    • The thermodynamic stability of the proteins of the ccd plasmid addiction system
    • Dao-Thi, M.H., Messens, J., Wyns, L., and Backmann, J. 2000. The thermodynamic stability of the proteins of the ccd plasmid addiction system. J. Mol. Biol. 299: 1373-1386.
    • (2000) J. Mol. Biol , vol.299 , pp. 1373-1386
    • Dao-Thi, M.H.1    Messens, J.2    Wyns, L.3    Backmann, J.4
  • 14
    • 0026624806 scopus 로고
    • Transcription and autoregulation of the stabilizing functions of broad-host-range plasmid RK2 in Escherichia coli, Agrobacterium tumefaciens and Pseudomonas aeruginosa
    • Davis, T.L., Helinski, D.R., and Roberts, R.C. 1992. Transcription and autoregulation of the stabilizing functions of broad-host-range plasmid RK2 in Escherichia coli, Agrobacterium tumefaciens and Pseudomonas aeruginosa. Mol. Microbiol. 6: 1981-1994.
    • (1992) Mol. Microbiol , vol.6 , pp. 1981-1994
    • Davis, T.L.1    Helinski, D.R.2    Roberts, R.C.3
  • 15
    • 18544405676 scopus 로고    scopus 로고
    • Distressing bacteria: Structure of a prokaryotic detox program
    • de la Cueva-Mendez, G. 2003. Distressing bacteria: Structure of a prokaryotic detox program. Mol. Cell 11: 848-850.
    • (2003) Mol. Cell , vol.11 , pp. 848-850
    • de la Cueva-Mendez, G.1
  • 16
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., and Bax, A. 1995. NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6: 277-293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 17
    • 0036723823 scopus 로고    scopus 로고
    • A genetically economical family of plasmid-encoded transcriptional repressors involved in control of plasmid copy number
    • del Solar, G., Hernandez-Arriaga, A.M., Gomis-Ruth, F.X., Coll, M., and Espinosa, M. 2002. A genetically economical family of plasmid-encoded transcriptional repressors involved in control of plasmid copy number. J. Bacteriol. 184: 4943-4951.
    • (2002) J. Bacteriol , vol.184 , pp. 4943-4951
    • del Solar, G.1    Hernandez-Arriaga, A.M.2    Gomis-Ruth, F.X.3    Coll, M.4    Espinosa, M.5
  • 18
    • 14644435825 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins and their functions
    • Dyson, H.J. and Wright, P.E. 2005. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6: 197-208.
    • (2005) Nat. Rev. Mol. Cell Biol , vol.6 , pp. 197-208
    • Dyson, H.J.1    Wright, P.E.2
  • 19
    • 0026703362 scopus 로고
    • The divergent promoters mediating transcription of the par locus of plasmid RP4 are subject to autoregulation
    • Eberl, L., Givskov, M., and Schwab, H. 1992. The divergent promoters mediating transcription of the par locus of plasmid RP4 are subject to autoregulation. Mol. Microbiol. 6: 1969-1979.
    • (1992) Mol. Microbiol , vol.6 , pp. 1969-1979
    • Eberl, L.1    Givskov, M.2    Schwab, H.3
  • 20
    • 0032696759 scopus 로고    scopus 로고
    • Addiction modules and programmed cell death and antideath in bacterial cultures
    • Engelberg-Kulka, H. and Glaser, G. 1999. Addiction modules and programmed cell death and antideath in bacterial cultures. Annu. Rev. Microbiol. 53: 43-70.
    • (1999) Annu. Rev. Microbiol , vol.53 , pp. 43-70
    • Engelberg-Kulka, H.1    Glaser, G.2
  • 22
    • 0034036498 scopus 로고    scopus 로고
    • New positive selection system based on the parD (kis/kid) system of the R1 plasmid
    • Gabant, P., Van Reeth, T., Dreze, P.L., Faelen, M., Szpirer, C., and Szpirer, J. 2000. New positive selection system based on the parD (kis/kid) system of the R1 plasmid. Biotechniques 28: 784-788.
    • (2000) Biotechniques , vol.28 , pp. 784-788
    • Gabant, P.1    Van Reeth, T.2    Dreze, P.L.3    Faelen, M.4    Szpirer, C.5    Szpirer, J.6
  • 23
    • 0034665030 scopus 로고    scopus 로고
    • Direct and indirect readout in mutant Met repressor-operator complexes
    • Garvie, C.W. and Phillips, S.E. 2000. Direct and indirect readout in mutant Met repressor-operator complexes. Structure 8: 905-914.
    • (2000) Structure , vol.8 , pp. 905-914
    • Garvie, C.W.1    Phillips, S.E.2
  • 24
    • 0033613864 scopus 로고    scopus 로고
    • Stability and DNA binding of the phd protein of the phage P1 plasmid addiction system
    • Gazit, E. and Sauer, R.T. 1999. Stability and DNA binding of the phd protein of the phage P1 plasmid addiction system. J. Biol. Chem. 274: 2652-2657.
    • (1999) J. Biol. Chem , vol.274 , pp. 2652-2657
    • Gazit, E.1    Sauer, R.T.2
  • 25
    • 0033976914 scopus 로고    scopus 로고
    • Toxin-antitoxin modules may regulate synthesis of macromolecules during nutritional stress
    • Gerdes, K. 2000. Toxin-antitoxin modules may regulate synthesis of macromolecules during nutritional stress. J. Bacteriol. 182: 561-572.
    • (2000) J. Bacteriol , vol.182 , pp. 561-572
    • Gerdes, K.1
  • 27
    • 0344826584 scopus 로고    scopus 로고
    • ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure
    • Golovanov, A.P., Barilla, D., Golovanova, M., Hayes, F., and Lian, L.Y. 2003. ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure. Mol. Microbiol. 50: 1141-1153.
    • (2003) Mol. Microbiol , vol.50 , pp. 1141-1153
    • Golovanov, A.P.1    Barilla, D.2    Golovanova, M.3    Hayes, F.4    Lian, L.Y.5
  • 30
    • 0141707105 scopus 로고    scopus 로고
    • Toxins-antitoxins: Plasmid maintenance, programmed cell death, and cell cycle arrest
    • Hayes, F. 2003. Toxins-antitoxins: Plasmid maintenance, programmed cell death, and cell cycle arrest. Science 301: 1496-1499.
    • (2003) Science , vol.301 , pp. 1496-1499
    • Hayes, F.1
  • 31
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm, L. and Sander, C. 1993. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233: 123-138.
    • (1993) J. Mol. Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 32
    • 0036098378 scopus 로고    scopus 로고
    • ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase
    • Jiang, Y., Pogliano, J., Helinski, D.R., and Konieczny, I. 2002. ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase. Mol. Microbiol. 44: 971-979.
    • (2002) Mol. Microbiol , vol.44 , pp. 971-979
    • Jiang, Y.1    Pogliano, J.2    Helinski, D.R.3    Konieczny, I.4
  • 33
    • 4644259437 scopus 로고    scopus 로고
    • Using NMRView to visualize and analyze the NMR spectra of macromolecules
    • Johnson, B.A. 2004. Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278: 313-352.
    • (2004) Methods Mol. Biol , vol.278 , pp. 313-352
    • Johnson, B.A.1
  • 34
    • 23744463273 scopus 로고    scopus 로고
    • Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin
    • Kamada, K. and Hanaoka, F. 2005. Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Mol. Cell 19: 497-509.
    • (2005) Mol. Cell , vol.19 , pp. 497-509
    • Kamada, K.1    Hanaoka, F.2
  • 35
    • 0037738520 scopus 로고    scopus 로고
    • Crystal structure of the MazE/MazF complex: Molecular bases of antidote-toxin recognition
    • Kamada, K., Hanaoka, F., and Burley, S.K. 2003. Crystal structure of the MazE/MazF complex: Molecular bases of antidote-toxin recognition. Mol. Cell 11: 875-884.
    • (2003) Mol. Cell , vol.11 , pp. 875-884
    • Kamada, K.1    Hanaoka, F.2    Burley, S.K.3
  • 36
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., and Wuthrich, K. 1996. MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graph. 14: 29-32, 51-55.
    • (1996) J. Mol. Graph , vol.14
    • Koradi, R.1    Billeter, M.2    Wuthrich, K.3
  • 37
    • 0037515721 scopus 로고    scopus 로고
    • Recognition of the intrinsically flexible addiction antidote MazE by a dromedary single domain antibody fragment. Structure, thermodynamics of binding, stability, and influence on interactions with DNA
    • Lah, J., Marianovsky, I., Glaser, G., Engelberg-Kulka, H., Kinne, J., Wyns, L., and Loris, R. 2003. Recognition of the intrinsically flexible addiction antidote MazE by a dromedary single domain antibody fragment. Structure, thermodynamics of binding, stability, and influence on interactions with DNA. J. Biol. Chem. 278: 14101-14111.
    • (2003) J. Biol. Chem , vol.278 , pp. 14101-14111
    • Lah, J.1    Marianovsky, I.2    Glaser, G.3    Engelberg-Kulka, H.4    Kinne, J.5    Wyns, L.6    Loris, R.7
  • 38
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S., and Thornton, J.M. 1993. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26: 283-291.
    • (1993) J. Appl. Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 39
    • 0030339738 scopus 로고    scopus 로고
    • AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
    • Laskowski, R.A., Rullmannn, J.A., MacArthur, M.W., Kaptein, R., and Thornton, J.M. 1996. AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8: 477-486.
    • (1996) J. Biomol. NMR , vol.8 , pp. 477-486
    • Laskowski, R.A.1    Rullmannn, J.A.2    MacArthur, M.W.3    Kaptein, R.4    Thornton, J.M.5
  • 40
    • 0027372158 scopus 로고
    • Plasmid addiction genes of bacteriophage P1:doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained
    • Lehnherr, H., Maguin, E., Jafri, S., and Yarmolinsky, M.B. 1993. Plasmid addiction genes of bacteriophage P1:doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained. J. Mol. Biol. 233: 414-428.
    • (1993) J. Mol. Biol , vol.233 , pp. 414-428
    • Lehnherr, H.1    Maguin, E.2    Jafri, S.3    Yarmolinsky, M.B.4
  • 41
    • 33644777837 scopus 로고    scopus 로고
    • Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF
    • Li, G.Y., Zhang, Y., Chan, M.C., Mal, T.K., Hoeflich, K.P., Inouye, M., and Ikura, M. 2006. Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF. J. Mol. Biol. 357: 139-150.
    • (2006) J. Mol. Biol , vol.357 , pp. 139-150
    • Li, G.Y.1    Zhang, Y.2    Chan, M.C.3    Mal, T.K.4    Hoeflich, K.P.5    Inouye, M.6    Ikura, M.7
  • 46
    • 33846011436 scopus 로고    scopus 로고
    • Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs
    • Mattison, K., Wilbur, J.S., So, M., and Brennan, R.G. 2006. Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J. Biol. Chem. 281: 37942-37951.
    • (2006) J. Biol. Chem , vol.281 , pp. 37942-37951
    • Mattison, K.1    Wilbur, J.S.2    So, M.3    Brennan, R.G.4
  • 47
    • 11844282843 scopus 로고    scopus 로고
    • Characterization of the Phd repressor-antitoxin boundary
    • McKinley, J.E. and Magnuson, R.D. 2005. Characterization of the Phd repressor-antitoxin boundary. J. Bacteriol. 187: 765-770.
    • (2005) J. Bacteriol , vol.187 , pp. 765-770
    • McKinley, J.E.1    Magnuson, R.D.2
  • 48
    • 0037452810 scopus 로고    scopus 로고
    • Crystal structure of the plasmid maintenance system ε/ζ: Functional mechanism of toxin ζ and inactivation by ε 2 ζ 2 complex formation
    • Meinhart, A., Alonso, J.C., Strater, N., and Saenger, W. 2003. Crystal structure of the plasmid maintenance system ε/ζ: Functional mechanism of toxin ζ and inactivation by ε 2 ζ 2 complex formation. Proc. Natl. Acad. Sci. 100: 1661-1666.
    • (2003) Proc. Natl. Acad. Sci , vol.100 , pp. 1661-1666
    • Meinhart, A.1    Alonso, J.C.2    Strater, N.3    Saenger, W.4
  • 49
    • 0035824885 scopus 로고    scopus 로고
    • Crystal structure of ω transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution
    • Murayama, K., Orth, P., de la Hoz, A.B., Alonso, J.C., and Saenger, W. 2001. Crystal structure of ω transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution. J. Mol. Biol. 314: 789-796.
    • (2001) J. Mol. Biol , vol.314 , pp. 789-796
    • Murayama, K.1    Orth, P.2    de la Hoz, A.B.3    Alonso, J.C.4    Saenger, W.5
  • 50
    • 0033401440 scopus 로고    scopus 로고
    • Thermodynamic properties and DNA binding of the ParD protein from the broad host-range plasmid RK2/RP4 killing system
    • Oberer, M., Lindner, H., Glatter, O., Kratky, C., and Keller, W. 1999. Thermodynamic properties and DNA binding of the ParD protein from the broad host-range plasmid RK2/RP4 killing system. Biol. Chem. 380: 1413-1420.
    • (1999) Biol. Chem , vol.380 , pp. 1413-1420
    • Oberer, M.1    Lindner, H.2    Glatter, O.3    Kratky, C.4    Keller, W.5
  • 51
    • 0036182510 scopus 로고    scopus 로고
    • The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins
    • Oberer, M., Zangger, K., Prytulla, S., and Keller, W. 2002. The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins. Biochem. J. 361: 41-47.
    • (2002) Biochem. J , vol.361 , pp. 41-47
    • Oberer, M.1    Zangger, K.2    Prytulla, S.3    Keller, W.4
  • 52
    • 14244266086 scopus 로고    scopus 로고
    • Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
    • Pandey, D.P. and Gerdes, K. 2005. Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res. 33: 966-976.
    • (2005) Nucleic Acids Res , vol.33 , pp. 966-976
    • Pandey, D.P.1    Gerdes, K.2
  • 53
    • 0030946721 scopus 로고    scopus 로고
    • Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability
    • Pecota, D.C., Kim, C.S., Wu, K., Gerdes, K., and Wood, T.K. 1997. Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability. Appl. Environ. Microbiol. 63: 1917-1924.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1917-1924
    • Pecota, D.C.1    Kim, C.S.2    Wu, K.3    Gerdes, K.4    Wood, T.K.5
  • 54
    • 0037428226 scopus 로고    scopus 로고
    • The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
    • Pedersen, K., Zavialov, A.V., Pavlov, M.Y., Elf, J., Gerdes, K., and Ehrenberg, M. 2003. The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 112: 131-140.
    • (2003) Cell , vol.112 , pp. 131-140
    • Pedersen, K.1    Zavialov, A.V.2    Pavlov, M.Y.3    Elf, J.4    Gerdes, K.5    Ehrenberg, M.6
  • 56
    • 16344375864 scopus 로고    scopus 로고
    • Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators
    • Popescu, A., Karpay, A., Israel, D.A., Peek Jr., R.M., and Krezel, A.M. 2005. Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators. Proteins 59: 303-311.
    • (2005) Proteins , vol.59 , pp. 303-311
    • Popescu, A.1    Karpay, A.2    Israel, D.A.3    Peek Jr., R.M.4    Krezel, A.M.5
  • 57
    • 0024462909 scopus 로고
    • Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor
    • Rafferty, J.B., Somers, W.S., Saint-Girons, I., and Phillips, S.E. 1989. Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor. Nature 341: 705-710.
    • (1989) Nature , vol.341 , pp. 705-710
    • Rafferty, J.B.1    Somers, W.S.2    Saint-Girons, I.3    Phillips, S.E.4
  • 58
    • 0028177303 scopus 로고
    • DNA recognition by β-sheets in the Arc repressor-operator crystal structure
    • Raumann, B.E., Rould, M.A., Pabo, C.O., and Sauer, R.T. 1994. DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature 367: 754-757.
    • (1994) Nature , vol.367 , pp. 754-757
    • Raumann, B.E.1    Rould, M.A.2    Pabo, C.O.3    Sauer, R.T.4
  • 59
    • 0027732050 scopus 로고
    • Characteristics and significance of DNA binding activity of plasmid stabilization protein ParD from the broad host-range plasmid RK2
    • Roberts, R.C., Spangler, C., and Helinski, D.R. 1993. Characteristics and significance of DNA binding activity of plasmid stabilization protein ParD from the broad host-range plasmid RK2. J. Biol. Chem. 268: 27109-27117.
    • (1993) J. Biol. Chem , vol.268 , pp. 27109-27117
    • Roberts, R.C.1    Spangler, C.2    Helinski, D.R.3
  • 60
    • 0025933063 scopus 로고
    • The kis and kid genes of the parD maintenance system of plasmid R1 form an operon that is autoregulated at the level of transcription by the co-ordinated action of the Kis and Kid proteins
    • Ruiz-Echevarria, M.J., Berzal-Herranz, A., Gerdes, K., and Diaz-Orejas, R. 1991a. The kis and kid genes of the parD maintenance system of plasmid R1 form an operon that is autoregulated at the level of transcription by the co-ordinated action of the Kis and Kid proteins. Mol. Microbiol. 5: 2685-2693.
    • (1991) Mol. Microbiol , vol.5 , pp. 2685-2693
    • Ruiz-Echevarria, M.J.1    Berzal-Herranz, A.2    Gerdes, K.3    Diaz-Orejas, R.4
  • 61
    • 0026090655 scopus 로고
    • Structural and functional comparison between the stability systems ParD of plasmid R1 and Ccd of plasmid F
    • Ruiz-Echevarria, M.J., de Torrontegui, G., Gimenez-Gallego, G., and Diaz-Orejas, R. 1991b. Structural and functional comparison between the stability systems ParD of plasmid R1 and Ccd of plasmid F. Mol. Gen. Genet. 225: 355-362.
    • (1991) Mol. Gen. Genet , vol.225 , pp. 355-362
    • Ruiz-Echevarria, M.J.1    de Torrontegui, G.2    Gimenez-Gallego, G.3    Diaz-Orejas, R.4
  • 62
    • 0028132685 scopus 로고
    • The antidote and autoregulatory functions of the F plasmid CcdA protein: A genetic and biochemical survey
    • Salmon, M.A., Van Melderen, L., Bernard, P., and Couturier, M. 1994. The antidote and autoregulatory functions of the F plasmid CcdA protein: A genetic and biochemical survey. Mol. Gen. Genet. 244: 530-538.
    • (1994) Mol. Gen. Genet , vol.244 , pp. 530-538
    • Salmon, M.A.1    Van Melderen, L.2    Bernard, P.3    Couturier, M.4
  • 63
    • 0037005943 scopus 로고    scopus 로고
    • Genetic identification of two functional regions in the antitoxin of the parD killer system of plasmid R1
    • Santos-Sierra, S., Pardo-Abarrio, C., Giraldo, R., and Diaz-Orejas, R. 2002. Genetic identification of two functional regions in the antitoxin of the parD killer system of plasmid R1. FEMS Microbiol. Lett. 206: 115-119.
    • (2002) FEMS Microbiol. Lett , vol.206 , pp. 115-119
    • Santos-Sierra, S.1    Pardo-Abarrio, C.2    Giraldo, R.3    Diaz-Orejas, R.4
  • 65
    • 1942443645 scopus 로고    scopus 로고
    • Modular organization of the Phd repressor/antitoxin protein
    • Smith, J.A. and Magnuson, R.D. 2004. Modular organization of the Phd repressor/antitoxin protein. J. Bacteriol. 186: 2692-2698.
    • (2004) J. Bacteriol , vol.186 , pp. 2692-2698
    • Smith, J.A.1    Magnuson, R.D.2
  • 66
    • 0026641755 scopus 로고
    • Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands
    • Somers, W.S. and Phillips, S.E. 1992. Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands. Nature 359: 387-393.
    • (1992) Nature , vol.359 , pp. 387-393
    • Somers, W.S.1    Phillips, S.E.2
  • 67
    • 18744409067 scopus 로고    scopus 로고
    • Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
    • Takagi, H., Kakuta, Y., Okada, T., Yao, M., Tanaka, I., and Kimura, M. 2005. Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects. Nat. Struct. Mol. Biol. 12: 327-331.
    • (2005) Nat. Struct. Mol. Biol , vol.12 , pp. 327-331
    • Takagi, H.1    Kakuta, Y.2    Okada, T.3    Yao, M.4    Tanaka, I.5    Kimura, M.6
  • 68
    • 0029861722 scopus 로고    scopus 로고
    • ATP-dependent degradation of CcdA by Lon protease. Effects of secondary structure and heterologous subunit interactions
    • Van Melderen, L., Thi, M.H., Lecchi, P., Gottesman, S., Couturier, M., and Maurizi, M.R. 1996. ATP-dependent degradation of CcdA by Lon protease. Effects of secondary structure and heterologous subunit interactions. J. Biol. Chem. 271: 27730-27738.
    • (1996) J. Biol. Chem , vol.271 , pp. 27730-27738
    • Van Melderen, L.1    Thi, M.H.2    Lecchi, P.3    Gottesman, S.4    Couturier, M.5    Maurizi, M.R.6
  • 69
    • 33645528243 scopus 로고    scopus 로고
    • Structures of ω repressors bound to direct and inverted DNA repeats explain modulation of transcription
    • Weihofen, W.A., Cicek, A., Pratto, F., Alonso, J.C., and Saenger, W. 2006. Structures of ω repressors bound to direct and inverted DNA repeats explain modulation of transcription. Nucleic Acids Res. 34: 1450-1458.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1450-1458
    • Weihofen, W.A.1    Cicek, A.2    Pratto, F.3    Alonso, J.C.4    Saenger, W.5
  • 71
    • 0037487201 scopus 로고    scopus 로고
    • X-filtering for a range of coupling constants: Application to the detection of intermolecular NOEs
    • Zangger, K., Oberer, M., Keller, W., and Sterk, H. 2003. X-filtering for a range of coupling constants: Application to the detection of intermolecular NOEs. J. Magn. Reson. 160: 97-106.
    • (2003) J. Magn. Reson , vol.160 , pp. 97-106
    • Zangger, K.1    Oberer, M.2    Keller, W.3    Sterk, H.4
  • 72
    • 23644443867 scopus 로고    scopus 로고
    • The toxin-antitoxin system of the streptococcal plasmid pSM19035
    • Zielenkiewicz, U. and Ceglowski, P. 2005. The toxin-antitoxin system of the streptococcal plasmid pSM19035. J. Bacteriol. 187: 6094-6105.
    • (2005) J. Bacteriol , vol.187 , pp. 6094-6105
    • Zielenkiewicz, U.1    Ceglowski, P.2


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