-
1
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system
-
doi: 10.1186/gb-2003-4-12-r81
-
Anantharaman, V. and Aravind, L. 2003. New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol. 4: R81. doi: 10.1186/gb-2003-4-12-r81.
-
(2003)
Genome Biol
, vol.4
-
-
Anantharaman, V.1
Aravind, L.2
-
2
-
-
23044469885
-
The PIN-domain toxin-antitoxin array in mycobacteria
-
Arcus, V.L., Rainey, P.B., and Turner, S.J. 2005. The PIN-domain toxin-antitoxin array in mycobacteria. Trends Microbiol. 13: 360-365.
-
(2005)
Trends Microbiol
, vol.13
, pp. 360-365
-
-
Arcus, V.L.1
Rainey, P.B.2
Turner, S.J.3
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N., and Bourne, P.E. 2000. The Protein Data Bank. Nucleic Acids Res. 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
0029741707
-
Positive selection of recombinant DNA by CcdB
-
Bernard, P. 1996. Positive selection of recombinant DNA by CcdB. Biotechniques 21: 320-323.
-
(1996)
Biotechniques
, vol.21
, pp. 320-323
-
-
Bernard, P.1
-
5
-
-
0025761119
-
The 41 carboxy-terminal residues of the miniF plasmid CcdA protein are sufficient to antagonize the killer activity of the CcdB protein
-
Bernard, P. and Couturier, M. 1991. The 41 carboxy-terminal residues of the miniF plasmid CcdA protein are sufficient to antagonize the killer activity of the CcdB protein. Mol. Gen. Genet. 226: 297-304.
-
(1991)
Mol. Gen. Genet
, vol.226
, pp. 297-304
-
-
Bernard, P.1
Couturier, M.2
-
6
-
-
0025336625
-
Structure of Arc repressor in solution: Evidence for a family of β-sheet DNA-binding proteins
-
Breg, J.N., van Opheusden, J.H., Burgering, M.J., Boelens, R., and Kaptein, R. 1990. Structure of Arc repressor in solution: Evidence for a family of β-sheet DNA-binding proteins. Nature 346: 586-589.
-
(1990)
Nature
, vol.346
, pp. 586-589
-
-
Breg, J.N.1
van Opheusden, J.H.2
Burgering, M.J.3
Boelens, R.4
Kaptein, R.5
-
7
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S., et al. 1998. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54: 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
8
-
-
0028609493
-
Solution structure of dimeric Mnt repressor (1-76)
-
Burgering, M.J., Boelens, R., Gilbert, D.E., Breg, J.N., Knight, K.L., Sauer, R.T., and Kaptein, R. 1994. Solution structure of dimeric Mnt repressor (1-76). Biochemistry 33: 15036-15045.
-
(1994)
Biochemistry
, vol.33
, pp. 15036-15045
-
-
Burgering, M.J.1
Boelens, R.2
Gilbert, D.E.3
Breg, J.N.4
Knight, K.L.5
Sauer, R.T.6
Kaptein, R.7
-
9
-
-
27944437497
-
Toxin-antitoxin modules as bacterial metabolic stress managers
-
Buts, L., Lah, J., Dao-Thi, M.H., Wyns, L., and Loris, R. 2005. Toxin-antitoxin modules as bacterial metabolic stress managers. Trends Biochem. Sci. 30: 672-679.
-
(2005)
Trends Biochem. Sci
, vol.30
, pp. 672-679
-
-
Buts, L.1
Lah, J.2
Dao-Thi, M.H.3
Wyns, L.4
Loris, R.5
-
10
-
-
1542379603
-
The YefM antitoxin defines a family of natively unfolded proteins: Implications as a novel antibacterial target
-
Cherny, I. and Gazit, E. 2004. The YefM antitoxin defines a family of natively unfolded proteins: Implications as a novel antibacterial target. J. Biol. Chem. 279: 8252-8261.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 8252-8261
-
-
Cherny, I.1
Gazit, E.2
-
11
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly, M.L. 1983. Solvent-accessible surfaces of proteins and nucleic acids. Science 221: 709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
12
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu, G., Delaglio, F., and Bax, A. 1999. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13: 289-302.
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
13
-
-
0034705331
-
The thermodynamic stability of the proteins of the ccd plasmid addiction system
-
Dao-Thi, M.H., Messens, J., Wyns, L., and Backmann, J. 2000. The thermodynamic stability of the proteins of the ccd plasmid addiction system. J. Mol. Biol. 299: 1373-1386.
-
(2000)
J. Mol. Biol
, vol.299
, pp. 1373-1386
-
-
Dao-Thi, M.H.1
Messens, J.2
Wyns, L.3
Backmann, J.4
-
14
-
-
0026624806
-
Transcription and autoregulation of the stabilizing functions of broad-host-range plasmid RK2 in Escherichia coli, Agrobacterium tumefaciens and Pseudomonas aeruginosa
-
Davis, T.L., Helinski, D.R., and Roberts, R.C. 1992. Transcription and autoregulation of the stabilizing functions of broad-host-range plasmid RK2 in Escherichia coli, Agrobacterium tumefaciens and Pseudomonas aeruginosa. Mol. Microbiol. 6: 1981-1994.
-
(1992)
Mol. Microbiol
, vol.6
, pp. 1981-1994
-
-
Davis, T.L.1
Helinski, D.R.2
Roberts, R.C.3
-
15
-
-
18544405676
-
Distressing bacteria: Structure of a prokaryotic detox program
-
de la Cueva-Mendez, G. 2003. Distressing bacteria: Structure of a prokaryotic detox program. Mol. Cell 11: 848-850.
-
(2003)
Mol. Cell
, vol.11
, pp. 848-850
-
-
de la Cueva-Mendez, G.1
-
16
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., and Bax, A. 1995. NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6: 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
17
-
-
0036723823
-
A genetically economical family of plasmid-encoded transcriptional repressors involved in control of plasmid copy number
-
del Solar, G., Hernandez-Arriaga, A.M., Gomis-Ruth, F.X., Coll, M., and Espinosa, M. 2002. A genetically economical family of plasmid-encoded transcriptional repressors involved in control of plasmid copy number. J. Bacteriol. 184: 4943-4951.
-
(2002)
J. Bacteriol
, vol.184
, pp. 4943-4951
-
-
del Solar, G.1
Hernandez-Arriaga, A.M.2
Gomis-Ruth, F.X.3
Coll, M.4
Espinosa, M.5
-
18
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson, H.J. and Wright, P.E. 2005. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6: 197-208.
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
19
-
-
0026703362
-
The divergent promoters mediating transcription of the par locus of plasmid RP4 are subject to autoregulation
-
Eberl, L., Givskov, M., and Schwab, H. 1992. The divergent promoters mediating transcription of the par locus of plasmid RP4 are subject to autoregulation. Mol. Microbiol. 6: 1969-1979.
-
(1992)
Mol. Microbiol
, vol.6
, pp. 1969-1979
-
-
Eberl, L.1
Givskov, M.2
Schwab, H.3
-
20
-
-
0032696759
-
Addiction modules and programmed cell death and antideath in bacterial cultures
-
Engelberg-Kulka, H. and Glaser, G. 1999. Addiction modules and programmed cell death and antideath in bacterial cultures. Annu. Rev. Microbiol. 53: 43-70.
-
(1999)
Annu. Rev. Microbiol
, vol.53
, pp. 43-70
-
-
Engelberg-Kulka, H.1
Glaser, G.2
-
21
-
-
0842303292
-
Bacterial programmed cell death systems as targets for antibiotics
-
Engelberg-Kulka, H., Sat, B., Reches, M., Amitai, S., and Hazan, R. 2004. Bacterial programmed cell death systems as targets for antibiotics. Trends Microbiol. 12: 66-71.
-
(2004)
Trends Microbiol
, vol.12
, pp. 66-71
-
-
Engelberg-Kulka, H.1
Sat, B.2
Reches, M.3
Amitai, S.4
Hazan, R.5
-
22
-
-
0034036498
-
New positive selection system based on the parD (kis/kid) system of the R1 plasmid
-
Gabant, P., Van Reeth, T., Dreze, P.L., Faelen, M., Szpirer, C., and Szpirer, J. 2000. New positive selection system based on the parD (kis/kid) system of the R1 plasmid. Biotechniques 28: 784-788.
-
(2000)
Biotechniques
, vol.28
, pp. 784-788
-
-
Gabant, P.1
Van Reeth, T.2
Dreze, P.L.3
Faelen, M.4
Szpirer, C.5
Szpirer, J.6
-
23
-
-
0034665030
-
Direct and indirect readout in mutant Met repressor-operator complexes
-
Garvie, C.W. and Phillips, S.E. 2000. Direct and indirect readout in mutant Met repressor-operator complexes. Structure 8: 905-914.
-
(2000)
Structure
, vol.8
, pp. 905-914
-
-
Garvie, C.W.1
Phillips, S.E.2
-
24
-
-
0033613864
-
Stability and DNA binding of the phd protein of the phage P1 plasmid addiction system
-
Gazit, E. and Sauer, R.T. 1999. Stability and DNA binding of the phd protein of the phage P1 plasmid addiction system. J. Biol. Chem. 274: 2652-2657.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 2652-2657
-
-
Gazit, E.1
Sauer, R.T.2
-
25
-
-
0033976914
-
Toxin-antitoxin modules may regulate synthesis of macromolecules during nutritional stress
-
Gerdes, K. 2000. Toxin-antitoxin modules may regulate synthesis of macromolecules during nutritional stress. J. Bacteriol. 182: 561-572.
-
(2000)
J. Bacteriol
, vol.182
, pp. 561-572
-
-
Gerdes, K.1
-
26
-
-
17844370503
-
Prokaryotic toxin-antitoxin stress response loci
-
Gerdes, K., Christensen, S.K., and Lobner-Olesen, A. 2005. Prokaryotic toxin-antitoxin stress response loci. Nat. Rev. Microbiol. 3: 371-382.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 371-382
-
-
Gerdes, K.1
Christensen, S.K.2
Lobner-Olesen, A.3
-
27
-
-
0344826584
-
ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure
-
Golovanov, A.P., Barilla, D., Golovanova, M., Hayes, F., and Lian, L.Y. 2003. ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure. Mol. Microbiol. 50: 1141-1153.
-
(2003)
Mol. Microbiol
, vol.50
, pp. 1141-1153
-
-
Golovanov, A.P.1
Barilla, D.2
Golovanova, M.3
Hayes, F.4
Lian, L.Y.5
-
28
-
-
0039985836
-
The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator
-
Gomis-Ruth, F.X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R., Gonzalez, A., Espinosa, M., del Solar, G., and Coll, M. 1998. The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator. EMBO J. 17: 7404-7415.
-
(1998)
EMBO J
, vol.17
, pp. 7404-7415
-
-
Gomis-Ruth, F.X.1
Sola, M.2
Acebo, P.3
Parraga, A.4
Guasch, A.5
Eritja, R.6
Gonzalez, A.7
Espinosa, M.8
del Solar, G.9
Coll, M.10
-
29
-
-
0036772626
-
Structural and functional analysis of the kid toxin protein from E. coli plasmid R1
-
Hargreaves, D., Santos-Sierra, S., Giraldo, R., Sabariegos-Jareno, R., de la Cueva-Mendez, G., Boelens, R., Diaz-Orejas, R., and Rafferty, J.B. 2002. Structural and functional analysis of the kid toxin protein from E. coli plasmid R1. Structure 10: 1425-1433.
-
(2002)
Structure
, vol.10
, pp. 1425-1433
-
-
Hargreaves, D.1
Santos-Sierra, S.2
Giraldo, R.3
Sabariegos-Jareno, R.4
de la Cueva-Mendez, G.5
Boelens, R.6
Diaz-Orejas, R.7
Rafferty, J.B.8
-
30
-
-
0141707105
-
Toxins-antitoxins: Plasmid maintenance, programmed cell death, and cell cycle arrest
-
Hayes, F. 2003. Toxins-antitoxins: Plasmid maintenance, programmed cell death, and cell cycle arrest. Science 301: 1496-1499.
-
(2003)
Science
, vol.301
, pp. 1496-1499
-
-
Hayes, F.1
-
31
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. and Sander, C. 1993. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233: 123-138.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
32
-
-
0036098378
-
ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase
-
Jiang, Y., Pogliano, J., Helinski, D.R., and Konieczny, I. 2002. ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase. Mol. Microbiol. 44: 971-979.
-
(2002)
Mol. Microbiol
, vol.44
, pp. 971-979
-
-
Jiang, Y.1
Pogliano, J.2
Helinski, D.R.3
Konieczny, I.4
-
33
-
-
4644259437
-
Using NMRView to visualize and analyze the NMR spectra of macromolecules
-
Johnson, B.A. 2004. Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278: 313-352.
-
(2004)
Methods Mol. Biol
, vol.278
, pp. 313-352
-
-
Johnson, B.A.1
-
34
-
-
23744463273
-
Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin
-
Kamada, K. and Hanaoka, F. 2005. Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Mol. Cell 19: 497-509.
-
(2005)
Mol. Cell
, vol.19
, pp. 497-509
-
-
Kamada, K.1
Hanaoka, F.2
-
35
-
-
0037738520
-
Crystal structure of the MazE/MazF complex: Molecular bases of antidote-toxin recognition
-
Kamada, K., Hanaoka, F., and Burley, S.K. 2003. Crystal structure of the MazE/MazF complex: Molecular bases of antidote-toxin recognition. Mol. Cell 11: 875-884.
-
(2003)
Mol. Cell
, vol.11
, pp. 875-884
-
-
Kamada, K.1
Hanaoka, F.2
Burley, S.K.3
-
36
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wuthrich, K. 1996. MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graph. 14: 29-32, 51-55.
-
(1996)
J. Mol. Graph
, vol.14
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
37
-
-
0037515721
-
Recognition of the intrinsically flexible addiction antidote MazE by a dromedary single domain antibody fragment. Structure, thermodynamics of binding, stability, and influence on interactions with DNA
-
Lah, J., Marianovsky, I., Glaser, G., Engelberg-Kulka, H., Kinne, J., Wyns, L., and Loris, R. 2003. Recognition of the intrinsically flexible addiction antidote MazE by a dromedary single domain antibody fragment. Structure, thermodynamics of binding, stability, and influence on interactions with DNA. J. Biol. Chem. 278: 14101-14111.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 14101-14111
-
-
Lah, J.1
Marianovsky, I.2
Glaser, G.3
Engelberg-Kulka, H.4
Kinne, J.5
Wyns, L.6
Loris, R.7
-
38
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S., and Thornton, J.M. 1993. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26: 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
39
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski, R.A., Rullmannn, J.A., MacArthur, M.W., Kaptein, R., and Thornton, J.M. 1996. AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8: 477-486.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmannn, J.A.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
40
-
-
0027372158
-
Plasmid addiction genes of bacteriophage P1:doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained
-
Lehnherr, H., Maguin, E., Jafri, S., and Yarmolinsky, M.B. 1993. Plasmid addiction genes of bacteriophage P1:doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained. J. Mol. Biol. 233: 414-428.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 414-428
-
-
Lehnherr, H.1
Maguin, E.2
Jafri, S.3
Yarmolinsky, M.B.4
-
41
-
-
33644777837
-
Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF
-
Li, G.Y., Zhang, Y., Chan, M.C., Mal, T.K., Hoeflich, K.P., Inouye, M., and Ikura, M. 2006. Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF. J. Mol. Biol. 357: 139-150.
-
(2006)
J. Mol. Biol
, vol.357
, pp. 139-150
-
-
Li, G.Y.1
Zhang, Y.2
Chan, M.C.3
Mal, T.K.4
Hoeflich, K.P.5
Inouye, M.6
Ikura, M.7
-
42
-
-
0033614009
-
Crystal structure of CcdB, a topoisomerase poison from E. coli
-
Loris, R., Dao-Thi, M.H., Bahassi, E.M., Van Melderen, L., Poortmans, F., Liddington, R., Couturier, M., and Wyns, L. 1999. Crystal structure of CcdB, a topoisomerase poison from E. coli. J. Mol. Biol. 285: 1667-1677.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 1667-1677
-
-
Loris, R.1
Dao-Thi, M.H.2
Bahassi, E.M.3
Van Melderen, L.4
Poortmans, F.5
Liddington, R.6
Couturier, M.7
Wyns, L.8
-
43
-
-
0042346293
-
Crystal structure of the intrinsically flexible addiction antidote MazE
-
Loris, R., Marianovsky, I., Lah, J., Laeremans, T., Engelberg-Kulka, H., Glaser, G., Muyldermans, S., and Wyns, L. 2003. Crystal structure of the intrinsically flexible addiction antidote MazE. J. Biol. Chem. 278: 28252-28257.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 28252-28257
-
-
Loris, R.1
Marianovsky, I.2
Lah, J.3
Laeremans, T.4
Engelberg-Kulka, H.5
Glaser, G.6
Muyldermans, S.7
Wyns, L.8
-
44
-
-
33750443632
-
Structural basis for nucleic acid and toxin recognition of the bacterial antitoxin CcdA
-
Madl, T., Van Melderen, L., Mine, N., Respondek, M., Oberer, M., Keller, W., Khatai, L., and Zangger, K. 2006. Structural basis for nucleic acid and toxin recognition of the bacterial antitoxin CcdA. J. Mol. Biol. 364: 170-185.
-
(2006)
J. Mol. Biol
, vol.364
, pp. 170-185
-
-
Madl, T.1
Van Melderen, L.2
Mine, N.3
Respondek, M.4
Oberer, M.5
Keller, W.6
Khatai, L.7
Zangger, K.8
-
45
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M.A., Stuart, A.C., Fiser, A., Sanchez, R., Melo, F., and Sali, A. 2000. Comparative protein structure modeling of genes and genomes. Annu. Rev. Biophys. Biomol. 29: 290-325.
-
(2000)
Annu. Rev. Biophys. Biomol
, vol.29
, pp. 290-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
46
-
-
33846011436
-
Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs
-
Mattison, K., Wilbur, J.S., So, M., and Brennan, R.G. 2006. Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J. Biol. Chem. 281: 37942-37951.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 37942-37951
-
-
Mattison, K.1
Wilbur, J.S.2
So, M.3
Brennan, R.G.4
-
47
-
-
11844282843
-
Characterization of the Phd repressor-antitoxin boundary
-
McKinley, J.E. and Magnuson, R.D. 2005. Characterization of the Phd repressor-antitoxin boundary. J. Bacteriol. 187: 765-770.
-
(2005)
J. Bacteriol
, vol.187
, pp. 765-770
-
-
McKinley, J.E.1
Magnuson, R.D.2
-
48
-
-
0037452810
-
Crystal structure of the plasmid maintenance system ε/ζ: Functional mechanism of toxin ζ and inactivation by ε 2 ζ 2 complex formation
-
Meinhart, A., Alonso, J.C., Strater, N., and Saenger, W. 2003. Crystal structure of the plasmid maintenance system ε/ζ: Functional mechanism of toxin ζ and inactivation by ε 2 ζ 2 complex formation. Proc. Natl. Acad. Sci. 100: 1661-1666.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 1661-1666
-
-
Meinhart, A.1
Alonso, J.C.2
Strater, N.3
Saenger, W.4
-
49
-
-
0035824885
-
Crystal structure of ω transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution
-
Murayama, K., Orth, P., de la Hoz, A.B., Alonso, J.C., and Saenger, W. 2001. Crystal structure of ω transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution. J. Mol. Biol. 314: 789-796.
-
(2001)
J. Mol. Biol
, vol.314
, pp. 789-796
-
-
Murayama, K.1
Orth, P.2
de la Hoz, A.B.3
Alonso, J.C.4
Saenger, W.5
-
50
-
-
0033401440
-
Thermodynamic properties and DNA binding of the ParD protein from the broad host-range plasmid RK2/RP4 killing system
-
Oberer, M., Lindner, H., Glatter, O., Kratky, C., and Keller, W. 1999. Thermodynamic properties and DNA binding of the ParD protein from the broad host-range plasmid RK2/RP4 killing system. Biol. Chem. 380: 1413-1420.
-
(1999)
Biol. Chem
, vol.380
, pp. 1413-1420
-
-
Oberer, M.1
Lindner, H.2
Glatter, O.3
Kratky, C.4
Keller, W.5
-
51
-
-
0036182510
-
The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins
-
Oberer, M., Zangger, K., Prytulla, S., and Keller, W. 2002. The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins. Biochem. J. 361: 41-47.
-
(2002)
Biochem. J
, vol.361
, pp. 41-47
-
-
Oberer, M.1
Zangger, K.2
Prytulla, S.3
Keller, W.4
-
52
-
-
14244266086
-
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
-
Pandey, D.P. and Gerdes, K. 2005. Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res. 33: 966-976.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 966-976
-
-
Pandey, D.P.1
Gerdes, K.2
-
53
-
-
0030946721
-
Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability
-
Pecota, D.C., Kim, C.S., Wu, K., Gerdes, K., and Wood, T.K. 1997. Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability. Appl. Environ. Microbiol. 63: 1917-1924.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 1917-1924
-
-
Pecota, D.C.1
Kim, C.S.2
Wu, K.3
Gerdes, K.4
Wood, T.K.5
-
54
-
-
0037428226
-
The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
-
Pedersen, K., Zavialov, A.V., Pavlov, M.Y., Elf, J., Gerdes, K., and Ehrenberg, M. 2003. The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 112: 131-140.
-
(2003)
Cell
, vol.112
, pp. 131-140
-
-
Pedersen, K.1
Zavialov, A.V.2
Pavlov, M.Y.3
Elf, J.4
Gerdes, K.5
Ehrenberg, M.6
-
56
-
-
16344375864
-
Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators
-
Popescu, A., Karpay, A., Israel, D.A., Peek Jr., R.M., and Krezel, A.M. 2005. Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators. Proteins 59: 303-311.
-
(2005)
Proteins
, vol.59
, pp. 303-311
-
-
Popescu, A.1
Karpay, A.2
Israel, D.A.3
Peek Jr., R.M.4
Krezel, A.M.5
-
57
-
-
0024462909
-
Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor
-
Rafferty, J.B., Somers, W.S., Saint-Girons, I., and Phillips, S.E. 1989. Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor. Nature 341: 705-710.
-
(1989)
Nature
, vol.341
, pp. 705-710
-
-
Rafferty, J.B.1
Somers, W.S.2
Saint-Girons, I.3
Phillips, S.E.4
-
58
-
-
0028177303
-
DNA recognition by β-sheets in the Arc repressor-operator crystal structure
-
Raumann, B.E., Rould, M.A., Pabo, C.O., and Sauer, R.T. 1994. DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature 367: 754-757.
-
(1994)
Nature
, vol.367
, pp. 754-757
-
-
Raumann, B.E.1
Rould, M.A.2
Pabo, C.O.3
Sauer, R.T.4
-
59
-
-
0027732050
-
Characteristics and significance of DNA binding activity of plasmid stabilization protein ParD from the broad host-range plasmid RK2
-
Roberts, R.C., Spangler, C., and Helinski, D.R. 1993. Characteristics and significance of DNA binding activity of plasmid stabilization protein ParD from the broad host-range plasmid RK2. J. Biol. Chem. 268: 27109-27117.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 27109-27117
-
-
Roberts, R.C.1
Spangler, C.2
Helinski, D.R.3
-
60
-
-
0025933063
-
The kis and kid genes of the parD maintenance system of plasmid R1 form an operon that is autoregulated at the level of transcription by the co-ordinated action of the Kis and Kid proteins
-
Ruiz-Echevarria, M.J., Berzal-Herranz, A., Gerdes, K., and Diaz-Orejas, R. 1991a. The kis and kid genes of the parD maintenance system of plasmid R1 form an operon that is autoregulated at the level of transcription by the co-ordinated action of the Kis and Kid proteins. Mol. Microbiol. 5: 2685-2693.
-
(1991)
Mol. Microbiol
, vol.5
, pp. 2685-2693
-
-
Ruiz-Echevarria, M.J.1
Berzal-Herranz, A.2
Gerdes, K.3
Diaz-Orejas, R.4
-
61
-
-
0026090655
-
Structural and functional comparison between the stability systems ParD of plasmid R1 and Ccd of plasmid F
-
Ruiz-Echevarria, M.J., de Torrontegui, G., Gimenez-Gallego, G., and Diaz-Orejas, R. 1991b. Structural and functional comparison between the stability systems ParD of plasmid R1 and Ccd of plasmid F. Mol. Gen. Genet. 225: 355-362.
-
(1991)
Mol. Gen. Genet
, vol.225
, pp. 355-362
-
-
Ruiz-Echevarria, M.J.1
de Torrontegui, G.2
Gimenez-Gallego, G.3
Diaz-Orejas, R.4
-
62
-
-
0028132685
-
The antidote and autoregulatory functions of the F plasmid CcdA protein: A genetic and biochemical survey
-
Salmon, M.A., Van Melderen, L., Bernard, P., and Couturier, M. 1994. The antidote and autoregulatory functions of the F plasmid CcdA protein: A genetic and biochemical survey. Mol. Gen. Genet. 244: 530-538.
-
(1994)
Mol. Gen. Genet
, vol.244
, pp. 530-538
-
-
Salmon, M.A.1
Van Melderen, L.2
Bernard, P.3
Couturier, M.4
-
63
-
-
0037005943
-
Genetic identification of two functional regions in the antitoxin of the parD killer system of plasmid R1
-
Santos-Sierra, S., Pardo-Abarrio, C., Giraldo, R., and Diaz-Orejas, R. 2002. Genetic identification of two functional regions in the antitoxin of the parD killer system of plasmid R1. FEMS Microbiol. Lett. 206: 115-119.
-
(2002)
FEMS Microbiol. Lett
, vol.206
, pp. 115-119
-
-
Santos-Sierra, S.1
Pardo-Abarrio, C.2
Giraldo, R.3
Diaz-Orejas, R.4
-
64
-
-
0141841775
-
Crystal structure of the nickel-responsive transcription factor NikR
-
Schreiter, E.R., Sintchak, M.D., Guo, Y., Chivers, P.T., Sauer, R.T., and Drennan, C.L. 2003. Crystal structure of the nickel-responsive transcription factor NikR. Nat. Struct. Biol. 10: 794-799.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 794-799
-
-
Schreiter, E.R.1
Sintchak, M.D.2
Guo, Y.3
Chivers, P.T.4
Sauer, R.T.5
Drennan, C.L.6
-
65
-
-
1942443645
-
Modular organization of the Phd repressor/antitoxin protein
-
Smith, J.A. and Magnuson, R.D. 2004. Modular organization of the Phd repressor/antitoxin protein. J. Bacteriol. 186: 2692-2698.
-
(2004)
J. Bacteriol
, vol.186
, pp. 2692-2698
-
-
Smith, J.A.1
Magnuson, R.D.2
-
66
-
-
0026641755
-
Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands
-
Somers, W.S. and Phillips, S.E. 1992. Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands. Nature 359: 387-393.
-
(1992)
Nature
, vol.359
, pp. 387-393
-
-
Somers, W.S.1
Phillips, S.E.2
-
67
-
-
18744409067
-
Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
-
Takagi, H., Kakuta, Y., Okada, T., Yao, M., Tanaka, I., and Kimura, M. 2005. Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects. Nat. Struct. Mol. Biol. 12: 327-331.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 327-331
-
-
Takagi, H.1
Kakuta, Y.2
Okada, T.3
Yao, M.4
Tanaka, I.5
Kimura, M.6
-
68
-
-
0029861722
-
ATP-dependent degradation of CcdA by Lon protease. Effects of secondary structure and heterologous subunit interactions
-
Van Melderen, L., Thi, M.H., Lecchi, P., Gottesman, S., Couturier, M., and Maurizi, M.R. 1996. ATP-dependent degradation of CcdA by Lon protease. Effects of secondary structure and heterologous subunit interactions. J. Biol. Chem. 271: 27730-27738.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 27730-27738
-
-
Van Melderen, L.1
Thi, M.H.2
Lecchi, P.3
Gottesman, S.4
Couturier, M.5
Maurizi, M.R.6
-
69
-
-
33645528243
-
Structures of ω repressors bound to direct and inverted DNA repeats explain modulation of transcription
-
Weihofen, W.A., Cicek, A., Pratto, F., Alonso, J.C., and Saenger, W. 2006. Structures of ω repressors bound to direct and inverted DNA repeats explain modulation of transcription. Nucleic Acids Res. 34: 1450-1458.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1450-1458
-
-
Weihofen, W.A.1
Cicek, A.2
Pratto, F.3
Alonso, J.C.4
Saenger, W.5
-
71
-
-
0037487201
-
X-filtering for a range of coupling constants: Application to the detection of intermolecular NOEs
-
Zangger, K., Oberer, M., Keller, W., and Sterk, H. 2003. X-filtering for a range of coupling constants: Application to the detection of intermolecular NOEs. J. Magn. Reson. 160: 97-106.
-
(2003)
J. Magn. Reson
, vol.160
, pp. 97-106
-
-
Zangger, K.1
Oberer, M.2
Keller, W.3
Sterk, H.4
-
72
-
-
23644443867
-
The toxin-antitoxin system of the streptococcal plasmid pSM19035
-
Zielenkiewicz, U. and Ceglowski, P. 2005. The toxin-antitoxin system of the streptococcal plasmid pSM19035. J. Bacteriol. 187: 6094-6105.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6094-6105
-
-
Zielenkiewicz, U.1
Ceglowski, P.2
|