-
1
-
-
0026094551
-
GCR1 of Saccharomyces cerevisiae encodes a DNA binding protein whose binding is abolished by mutations in the CTTCC sequence motif
-
Baker HV (1991) GCR1 of Saccharomyces cerevisiae encodes a DNA binding protein whose binding is abolished by mutations in the CTTCC sequence motif. PNAS 88:9443-9447
-
(1991)
PNAS
, vol.88
, pp. 9443-9447
-
-
Baker, H.V.1
-
2
-
-
33846798394
-
The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level
-
Barbara KE, Haley TM, Willis KA, Santangelo GM (2007) The transcription factor Gcr1 stimulates cell growth by participating in nutrient-responsive gene expression on a global level. Mol Genet Genomics 277:171-188
-
(2007)
Mol Genet Genomics
, vol.277
, pp. 171-188
-
-
Barbara, K.E.1
Haley, T.M.2
Willis, K.A.3
Santangelo, G.M.4
-
3
-
-
24044470632
-
A conserved mediator hinge revealed in the structure of the MED7.MED21 (Med7.Srb7) heterodimer
-
Baumli S, Hoeppner S, Cramer P (2005) A conserved mediator hinge revealed in the structure of the MED7.MED21 (Med7.Srb7) heterodimer. J Biol Chem 280:18171-18178
-
(2005)
J Biol Chem
, vol.280
, pp. 18171-18178
-
-
Baumli, S.1
Hoeppner, S.2
Cramer, P.3
-
4
-
-
0029145638
-
Predicting coiled coils by use of pairwise residue correlations
-
Berger B, Wilson DB, Wolf E, Tonchev T, Milla M, Kim PS (1995) Predicting coiled coils by use of pairwise residue correlations. Proc Natl Acad Sci USA 92:8259-8263
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8259-8263
-
-
Berger, B.1
Wilson, D.B.2
Wolf, E.3
Tonchev, T.4
Milla, M.5
Kim, P.S.6
-
5
-
-
0032463343
-
RING fingers and B-boxes: Zinc-binding protein-protein interaction domains
-
Borden KL (1998) RING fingers and B-boxes: zinc-binding protein-protein interaction domains. Biochem Cell Biol 76:351-358
-
(1998)
Biochem Cell Biol
, vol.76
, pp. 351-358
-
-
Borden, K.L.1
-
6
-
-
2942610696
-
A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II
-
Bourbon HM, Aguilera A, Ansari AZ, Asturias FJ, Berk AJ, Bjorklund S, Blackwell TK, Borggrefe T, Carey M, Carlson M, Conaway JW, Conaway RC, Emmons SW, Fondell JD, Freedman LP, Fukasawa T, Gustafsson CM, Han M, He X, Herman PK, Hinnebusch AG, Holmberg S, Holstege FC, Jaehning JA, Kim YJ, Kuras L, Leutz A, Lis JT, Meisterernest M, Naar AM, Nasmyth K, Parvin JD, Ptashne M, Reinberg D, Ronne H, Sadowski I, Sakurai H, Sipiczki M, Sternberg PW, Stillman DJ, Strich R, Struhl K, Svejstrup JQ, Tuck S, Winston F, Roeder RG, Kornberg RD (2004) A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell 14:553-557
-
(2004)
Mol Cell
, vol.14
, pp. 553-557
-
-
Bourbon, H.M.1
Aguilera, A.2
Ansari, A.Z.3
Asturias, F.J.4
Berk, A.J.5
Bjorklund, S.6
Blackwell, T.K.7
Borggrefe, T.8
Carey, M.9
Carlson, M.10
Conaway, J.W.11
Conaway, R.C.12
Emmons, S.W.13
Fondell, J.D.14
Freedman, L.P.15
Fukasawa, T.16
Gustafsson, C.M.17
Han, M.18
He, X.19
Herman, P.K.20
Hinnebusch, A.G.21
Holmberg, S.22
Holstege, F.C.23
Jaehning, J.A.24
Kim, Y.J.25
Kuras, L.26
Leutz, A.27
Lis, J.T.28
Meisterernest, M.29
Naar, A.M.30
Nasmyth, K.31
Parvin, J.D.32
Ptashne, M.33
Reinberg, D.34
Ronne, H.35
Sadowski, I.36
Sakurai, H.37
Sipiczki, M.38
Sternberg, P.W.39
Stillman, D.J.40
Strich, R.41
Struhl, K.42
Svejstrup, J.Q.43
Tuck, S.44
Winston, F.45
Roeder, R.G.46
Kornberg, R.D.47
more..
-
7
-
-
14044266853
-
Gene recruitment of the activated INO1 locus to the nuclear membrane
-
Brickner JH, Walter P (2004) Gene recruitment of the activated INO1 locus to the nuclear membrane. PLoS Biol 2:e342
-
(2004)
PLoS Biol
, vol.2
, pp. 342
-
-
Brickner, J.H.1
Walter, P.2
-
8
-
-
0030029955
-
The mixed lineage leukemia (MLL) protein involved in 11q23 translocations contains a domain that binds cruciform DNA and scaffold attachment region (SAR) DNA
-
Broeker PL, Harden A, Rowley JD, Zeleznik-Le N (1996) The mixed lineage leukemia (MLL) protein involved in 11q23 translocations contains a domain that binds cruciform DNA and scaffold attachment region (SAR) DNA. Curr Top Microbiol Immunol 211:259-268
-
(1996)
Curr Top Microbiol Immunol
, vol.211
, pp. 259-268
-
-
Broeker, P.L.1
Harden, A.2
Rowley, J.D.3
Zeleznik-Le, N.4
-
9
-
-
0028292448
-
The SNF/SWI family of global transcriptional activators
-
Carlson M, Laurent BC (1994) The SNF/SWI family of global transcriptional activators. Curr Opin Cell Biol 6:396-402
-
(1994)
Curr Opin Cell Biol
, vol.6
, pp. 396-402
-
-
Carlson, M.1
Laurent, B.C.2
-
10
-
-
2342501365
-
Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
-
Casolari JM, Brown CR, Komili S, West J, Hieronymus H, Silver PA (2004) Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization. Cell 117:427-439
-
(2004)
Cell
, vol.117
, pp. 427-439
-
-
Casolari, J.M.1
Brown, C.R.2
Komili, S.3
West, J.4
Hieronymus, H.5
Silver, P.A.6
-
11
-
-
18844412748
-
Developmentally induced changes in transcriptional program alter spatial organization across chromosomes
-
Casolari JM, Brown CR, Drubin DA, Rando OJ, Silver PA (2005) Developmentally induced changes in transcriptional program alter spatial organization across chromosomes. Genes Dev 19:1188-1198
-
(2005)
Genes Dev
, vol.19
, pp. 1188-1198
-
-
Casolari, J.M.1
Brown, C.R.2
Drubin, D.A.3
Rando, O.J.4
Silver, P.A.5
-
12
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497-3500
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
14
-
-
0033546210
-
The organization of replication and transcription
-
Cook PR (1999) The organization of replication and transcription. Science 284:1790-1795
-
(1999)
Science
, vol.284
, pp. 1790-1795
-
-
Cook, P.R.1
-
15
-
-
0036842123
-
Predicting three-dimensional genome structure from transcriptional activity
-
Cook PR (2002) Predicting three-dimensional genome structure from transcriptional activity. Nat Genet 32:347-352
-
(2002)
Nat Genet
, vol.32
, pp. 347-352
-
-
Cook, P.R.1
-
16
-
-
0001105482
-
Is alpha-keratin a coiled coil?
-
Crick F (1952) Is alpha-keratin a coiled coil?. Nature 170:882-883
-
(1952)
Nature
, vol.170
, pp. 882-883
-
-
Crick, F.1
-
17
-
-
0000920828
-
The packing of alpha-helicies: Simple coiled coils
-
Crick F (1953) The packing of alpha-helicies: simple coiled coils. Acta Crystallogr 6:689-697
-
(1953)
Acta Crystallogr
, vol.6
, pp. 689-697
-
-
Crick, F.1
-
18
-
-
2442591839
-
Extending the repertoire of the mixed-lineage leukemia gene MLL in leukemogenesis
-
Daser A, Rabbitts TH (2004) Extending the repertoire of the mixed-lineage leukemia gene MLL in leukemogenesis. Genes Dev 18:965-974
-
(2004)
Genes Dev
, vol.18
, pp. 965-974
-
-
Daser, A.1
Rabbitts, T.H.2
-
19
-
-
0030883032
-
Regulated nuclear translocation of the Mig1 glucose repressor
-
De Vit MJ, Waddle JA, Johnston M (1997) Regulated nuclear translocation of the Mig1 glucose repressor. Mol Biol Cell 8:1603-1618
-
(1997)
Mol Biol Cell
, vol.8
, pp. 1603-1618
-
-
De Vit, M.J.1
Waddle, J.A.2
Johnston, M.3
-
20
-
-
0035012429
-
Rap1p requires Gcr1p and Gcr2p homodimers to activate ribosomal protein and glycolytic genes, respectively
-
Deminoff SJ, Santangelo GM (2001) Rap1p requires Gcr1p and Gcr2p homodimers to activate ribosomal protein and glycolytic genes, respectively. Genetics 158:133-143
-
(2001)
Genetics
, vol.158
, pp. 133-143
-
-
Deminoff, S.J.1
Santangelo, G.M.2
-
21
-
-
0028864346
-
Unigenic evolution: A novel genetic method localizes a putative leucine zipper that mediates dimerization of the Saccharomyces cerevisiae regulator Gcr1p
-
Deminoff SJ, Tornow J, Santangelo GM (1995) Unigenic evolution: a novel genetic method localizes a putative leucine zipper that mediates dimerization of the Saccharomyces cerevisiae regulator Gcr1p. Genetics 141:1263-1274
-
(1995)
Genetics
, vol.141
, pp. 1263-1274
-
-
Deminoff, S.J.1
Tornow, J.2
Santangelo, G.M.3
-
22
-
-
0347601050
-
Coordination between eukaryotic growth and cell cycle progression: RAP1/GCR1 transcriptional activation mediates glucose-dependent CLN function
-
Deminoff SJ, Willis KA, Santangelo GM (2003) Coordination between eukaryotic growth and cell cycle progression: RAP1/GCR1 transcriptional activation mediates glucose-dependent CLN function. Recent Res Dev Genet 3:1-16
-
(2003)
Recent Res Dev Genet
, vol.3
, pp. 1-16
-
-
Deminoff, S.J.1
Willis, K.A.2
Santangelo, G.M.3
-
23
-
-
33144488960
-
Simple fold composition and modular architecture of the nuclear pore complex
-
Devos D, Dokudovskaya S, Williams R, Alber F, Eswar N, Chait BT, Rout MP, Sali A (2006) Simple fold composition and modular architecture of the nuclear pore complex. Proc Natl Acad Sci USA 103:2172-2177
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2172-2177
-
-
Devos, D.1
Dokudovskaya, S.2
Williams, R.3
Alber, F.4
Eswar, N.5
Chait, B.T.6
Rout, M.P.7
Sali, A.8
-
24
-
-
0035281749
-
DDT-a novel domain in different transcription and chromosome remodeling factors
-
Doerks T, Copley R, Bork P (2001) DDT-a novel domain in different transcription and chromosome remodeling factors. Trends Biochem Sci 26:145-146
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 145-146
-
-
Doerks, T.1
Copley, R.2
Bork, P.3
-
25
-
-
0029027191
-
Genetic approaches to nuclear pore structure and function
-
Doye V, Hurt EC (1995) Genetic approaches to nuclear pore structure and function. Trends Genet 11:235-241
-
(1995)
Trends Genet
, vol.11
, pp. 235-241
-
-
Doye, V.1
Hurt, E.C.2
-
26
-
-
0036087548
-
Saccharomyces genome database (SGD) provides secondary gene annotation using the gene ontology (GO)
-
Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM (2002) Saccharomyces genome database (SGD) provides secondary gene annotation using the gene ontology (GO). Nucleic Acids Res 30:69-72
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 69-72
-
-
Dwight, S.S.1
Harris, M.A.2
Dolinski, K.3
Ball, C.A.4
Binkley, G.5
Christie, K.R.6
Fisk, D.G.7
Issel-Tarver, L.8
Schroeder, M.9
Sherlock, G.10
Sethuraman, A.11
Weng, S.12
Botstein, D.13
Cherry, J.M.14
-
27
-
-
0024590007
-
Parallel association of Fos and Jun leucine zippers juxtaposes DNA binding domains
-
Gentz R, Rauscher FJ 3rd, Abate C, Curran T (1989) Parallel association of Fos and Jun leucine zippers juxtaposes DNA binding domains. Science 243:1695-1699
-
(1989)
Science
, vol.243
, pp. 1695-1699
-
-
Gentz, R.1
Rauscher III, F.J.2
Abate, C.3
Curran, T.4
-
28
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
Harbury PB, Zhang T, Kim PS, Alber T (1993) A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science 262:1401-1407
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
29
-
-
0034954940
-
Isolation of GCR1, a major transcription factor of glycolytic genes in Saccharomyces cerevisiae, from Kluyveromyces lactis
-
Haw R, Devi Yarragudi A, Uemura H (2001) Isolation of GCR1, a major transcription factor of glycolytic genes in Saccharomyces cerevisiae, from Kluyveromyces lactis. Yeast 18:729-735
-
(2001)
Yeast
, vol.18
, pp. 729-735
-
-
Haw, R.1
Devi Yarragudi, A.2
Uemura, H.3
-
30
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, Jespersen H, Podtelejnikov A, Nielsen E, Crawford J, Poulsen V, Sorensen BD, Matthiesen J, Hendrickson RC, Gleeson F, Pawson T, Moran MF, Durocher D, Mann M, Hogue CW, Figeys D, Tyers M (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415:180-183
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.44
Figeys, D.45
Tyers, M.46
more..
-
31
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh WK, Falvo JV, Gerke LC, Carroll AS, Howson RW, Weissman JS, O'Shea EK (2003) Global analysis of protein localization in budding yeast. Nature 425:686-691
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
32
-
-
0026650525
-
Characterization of the DNA-binding activity of GCR1: In vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae
-
Huie MA, Scott EW, Drazinic CM, Lopez MC, Hornstra IK, Yang TP, Baker HV (1992) Characterization of the DNA-binding activity of GCR1: in vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae. Mol Cell Biol 12:2690-2700
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2690-2700
-
-
Huie, M.A.1
Scott, E.W.2
Drazinic, C.M.3
Lopez, M.C.4
Hornstra, I.K.5
Yang, T.P.6
Baker, H.V.7
-
33
-
-
0036464606
-
Recurrent coiled-coil motifs in NUP98 fusion partners provide a clue to leukemogenesis
-
Hussey DJ, Dobrovic A (2002) Recurrent coiled-coil motifs in NUP98 fusion partners provide a clue to leukemogenesis. Blood 99:1097-1098
-
(2002)
Blood
, vol.99
, pp. 1097-1098
-
-
Hussey, D.J.1
Dobrovic, A.2
-
34
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 98:4569-4574
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
35
-
-
0031027203
-
A basic helix-loop-helix-leucine zipper transcription complex in yeast functions in a signaling pathway from mitochondria to the nucleus
-
Jia Y, Rothermel B, Thornton J, Butow RA (1997) A basic helix-loop-helix-leucine zipper transcription complex in yeast functions in a signaling pathway from mitochondria to the nucleus. Mol Cell Biol 17:1110-1117
-
(1997)
Mol Cell Biol
, vol.17
, pp. 1110-1117
-
-
Jia, Y.1
Rothermel, B.2
Thornton, J.3
Butow, R.A.4
-
36
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511-518
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
37
-
-
33750799403
-
The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering
-
Kim YG, Raunser S, Munger C, Wagner J, Song YL, Cygler M, Walz T, Oh BH, Sacher M (2006) The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering. Cell 127:817-830
-
(2006)
Cell
, vol.127
, pp. 817-830
-
-
Kim, Y.G.1
Raunser, S.2
Munger, C.3
Wagner, J.4
Song, Y.L.5
Cygler, M.6
Walz, T.7
Oh, B.H.8
Sacher, M.9
-
38
-
-
0024205841
-
The role of the leucine zipper in the fos-jun interaction
-
Kouzarides T, Ziff E (1988) The role of the leucine zipper in the fos-jun interaction. Nature 336:646-651
-
(1988)
Nature
, vol.336
, pp. 646-651
-
-
Kouzarides, T.1
Ziff, E.2
-
39
-
-
0035172587
-
A family of small coiled-coil-forming proteins functioning at the late endosome in yeast
-
Kranz A, Kinner A, Kolling R (2001) A family of small coiled-coil-forming proteins functioning at the late endosome in yeast. Mol Biol Cell 12:711-723
-
(2001)
Mol Biol Cell
, vol.12
, pp. 711-723
-
-
Kranz, A.1
Kinner, A.2
Kolling, R.3
-
40
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrin-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440:637-643
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
Punna, T.11
Peregrin-Alvarez, J.M.12
Shales, M.13
Zhang, X.14
Davey, M.15
Robinson, M.D.16
Paccanaro, A.17
Bray, J.E.18
Sheung, A.19
Beattie, B.20
Richards, D.P.21
Canadien, V.22
Lalev, A.23
Mena, F.24
Wong, P.25
Starostine, A.26
Canete, M.M.27
Vlasblom, J.28
Wu, S.29
Orsi, C.30
Collins, S.R.31
Chandran, S.32
Haw, R.33
Rilstone, J.J.34
Gandi, K.35
Thompson, N.J.36
Musso, G.37
St Onge, P.38
Ghanny, S.39
Lam, M.H.40
Butland, G.41
Altaf-Ul, A.M.42
Kanaya, S.43
Shilatifard, A.44
O'Shea, E.45
Weissman, J.S.46
Ingles, C.J.47
Hughes, T.R.48
Parkinson, J.49
Gerstein, M.50
Wodak, S.J.51
Emili, A.52
Greenblatt, J.F.53
more..
-
41
-
-
0037087575
-
Subcellular localization of the yeast proteome
-
Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L, Drawid A, Jansen R, Liu Y, Cheung KH, Miller P, Gerstein M, Roeder GS, Snyder M (2002) Subcellular localization of the yeast proteome. Genes Dev 16:707-719
-
(2002)
Genes Dev
, vol.16
, pp. 707-719
-
-
Kumar, A.1
Agarwal, S.2
Heyman, J.A.3
Matson, S.4
Heidtman, M.5
Piccirillo, S.6
Umansky, L.7
Drawid, A.8
Jansen, R.9
Liu, Y.10
Cheung, K.H.11
Miller, P.12
Gerstein, M.13
Roeder, G.S.14
Snyder, M.15
-
42
-
-
0024295767
-
The leucine zipper: A hypothetical structure common to a new class of DNA binding proteins
-
Landschulz WH, Johnson PF, McKnight SL (1988) The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science 240:1759-1764
-
(1988)
Science
, vol.240
, pp. 1759-1764
-
-
Landschulz, W.H.1
Johnson, P.F.2
McKnight, S.L.3
-
43
-
-
33644877451
-
SMART 5: Domains in the context of genomes and networks
-
Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bork P (2006) SMART 5: domains in the context of genomes and networks. Nucleic Acids Res 34:D257-D260
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Letunic, I.1
Copley, R.R.2
Pils, B.3
Pinkert, S.4
Schultz, J.5
Bork, P.6
-
44
-
-
0027524176
-
RTG1 and RTG2: Two yeast genes required for a novel path of communication from mitochondria to the nucleus
-
Liao X, Butow RA (1993) RTG1 and RTG2: two yeast genes required for a novel path of communication from mitochondria to the nucleus. Cell 72:61-71
-
(1993)
Cell
, vol.72
, pp. 61-71
-
-
Liao, X.1
Butow, R.A.2
-
45
-
-
17444424974
-
The structure of alpha-helical coiled coils
-
Lupas AN, Gruber M (2005) The structure of alpha-helical coiled coils. Adv Protein Chem 70:37-78
-
(2005)
Adv Protein Chem
, vol.70
, pp. 37-78
-
-
Lupas, A.N.1
Gruber, M.2
-
46
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A, Van Dyke M, Stock J (1991) Predicting coiled coils from protein sequences. Science 252:1162-1164
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
47
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis T, Reed R (2002) An extensive network of coupling among gene expression machines. Nature 416:499-506
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
49
-
-
17644419993
-
Reverse recruitment: The Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation
-
Menon BB, Sarma NJ, Pasula S, Deminoff SJ, Willis KA, Barbara KE, Andrews B, Santangelo GM (2005) Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation. Proc Natl Acad Sci USA 102:5749-5754
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5749-5754
-
-
Menon, B.B.1
Sarma, N.J.2
Pasula, S.3
Deminoff, S.J.4
Willis, K.A.5
Barbara, K.E.6
Andrews, B.7
Santangelo, G.M.8
-
50
-
-
33644875537
-
MIPS: Analysis and annotation of proteins from whole genomes in 2005
-
Mewes HW, Frishman D, Mayer KF, Munsterkotter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stumpflen V (2006) MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res 34:D169-D172
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Mewes, H.W.1
Frishman, D.2
Mayer, K.F.3
Munsterkotter, M.4
Noubibou, O.5
Pagel, P.6
Rattei, T.7
Oesterheld, M.8
Ruepp, A.9
Stumpflen, V.10
-
51
-
-
0037335034
-
How the ubiquitin-proteasome system controls transcription
-
Muratani M, Tansey WP (2003) How the ubiquitin-proteasome system controls transcription. Nat Rev Mol Cell Biol 4:192-201
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 192-201
-
-
Muratani, M.1
Tansey, W.P.2
-
52
-
-
0024378079
-
Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifically to a common DNA sequence
-
Murre C, McCaw PS, Vaessin H, Caudy M, Jan LY, Jan YN, Cabrera CV, Buskin JN, Hauschka SD, Lassar AB et al (1989) Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifically to a common DNA sequence. Cell 58:537-544
-
(1989)
Cell
, vol.58
, pp. 537-544
-
-
Murre, C.1
McCaw, P.S.2
Vaessin, H.3
Caudy, M.4
Jan, L.Y.5
Jan, Y.N.6
Cabrera, C.V.7
Buskin, J.N.8
Hauschka, S.D.9
Lassar, A.B.10
-
53
-
-
0032561189
-
RNA polymerase II holoenzymes and subcomplexes
-
Myer VE, Young RA (1998) RNA polymerase II holoenzymes and subcomplexes. J Biol Chem 273:27757-27760
-
(1998)
J Biol Chem
, vol.273
, pp. 27757-27760
-
-
Myer, V.E.1
Young, R.A.2
-
54
-
-
0037039309
-
A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3
-
Nagy PL, Griesenbeck J, Kornberg RD, Cleary ML (2002) A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3. Proc Natl Acad Sci USA 99:90-94
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 90-94
-
-
Nagy, P.L.1
Griesenbeck, J.2
Kornberg, R.D.3
Cleary, M.L.4
-
55
-
-
17644394240
-
How do so few control so many?
-
Nasmyth K (2005) How do so few control so many?. Cell 120:739-746
-
(2005)
Cell
, vol.120
, pp. 739-746
-
-
Nasmyth, K.1
-
56
-
-
0024561738
-
Two functionally different regions in Fos are required for the sequence-specific DNA interaction of the Fos/Jun protein complex
-
Neuberg M, Schuermann M, Hunter JB, Muller R (1989) Two functionally different regions in Fos are required for the sequence-specific DNA interaction of the Fos/Jun protein complex. Nature 338:589-590
-
(1989)
Nature
, vol.338
, pp. 589-590
-
-
Neuberg, M.1
Schuermann, M.2
Hunter, J.B.3
Muller, R.4
-
57
-
-
0034700087
-
A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae
-
Newman JR, Wolf E, Kim PS (2000) A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae. Proc Natl Acad Sci USA 97:13203-13208
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 13203-13208
-
-
Newman, J.R.1
Wolf, E.2
Kim, P.S.3
-
58
-
-
0030668324
-
SET1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes
-
Nislow C, Ray E, Pillus L (1997) SET1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes. Mol Biol Cell 8:2421-2436
-
(1997)
Mol Biol Cell
, vol.8
, pp. 2421-2436
-
-
Nislow, C.1
Ray, E.2
Pillus, L.3
-
59
-
-
0032497322
-
A buried polar interaction can direct the relative orientation of helices in a coiled coil
-
Oakley MG, Kim PS (1998) A buried polar interaction can direct the relative orientation of helices in a coiled coil. Biochemistry 37:12603-12610
-
(1998)
Biochemistry
, vol.37
, pp. 12603-12610
-
-
Oakley, M.G.1
Kim, P.S.2
-
60
-
-
0020446736
-
Coiled-coils in alpha-helix-containing proteins: Analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins
-
Parry DA (1982) Coiled-coils in alpha-helix-containing proteins: analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins. Biosci Rep 2:1017-1024
-
(1982)
Biosci Rep
, vol.2
, pp. 1017-1024
-
-
Parry, D.A.1
-
61
-
-
0031910069
-
Growth-independent regulation of CLN3 mRNA levels by nutrients in Saccharomyces cerevisiae
-
Parviz F, Heideman W (1998) Growth-independent regulation of CLN3 mRNA levels by nutrients in Saccharomyces cerevisiae. J Bacteriol 180:225-230
-
(1998)
J Bacteriol
, vol.180
, pp. 225-230
-
-
Parviz, F.1
Heideman, W.2
-
62
-
-
0033602030
-
SNAREs and the secretory pathway-lessons from yeast
-
Pelham HR (1999) SNAREs and the secretory pathway-lessons from yeast. Exp Cell Res 247:1-8
-
(1999)
Exp Cell Res
, vol.247
, pp. 1-8
-
-
Pelham, H.R.1
-
64
-
-
29244468267
-
Coiled-coil protein composition of 22 proteomes-differences and common themes in subcellular infrastructure and traffic control
-
Rose A, Schraegle SJ, Stahlberg EA, Meier I (2005) Coiled-coil protein composition of 22 proteomes-differences and common themes in subcellular infrastructure and traffic control. BMC Evol Biol 5:66
-
(2005)
BMC Evol Biol
, vol.5
, pp. 66
-
-
Rose, A.1
Schraegle, S.J.2
Stahlberg, E.A.3
Meier, I.4
-
65
-
-
0032411481
-
The critical role of chromosome translocations in human leukemias
-
Rowley JD (1998) The critical role of chromosome translocations in human leukemias. Annu Rev Genet 32:495-519
-
(1998)
Annu Rev Genet
, vol.32
, pp. 495-519
-
-
Rowley, J.D.1
-
66
-
-
0037028488
-
MLL3, a new human member of the TRX/MLL gene family, maps to 7q36, a chromosome region frequently deleted in myeloid leukaemia
-
Ruault M, Brun ME, Ventura M, Roizes G, De Sario A (2002) MLL3, a new human member of the TRX/MLL gene family, maps to 7q36, a chromosome region frequently deleted in myeloid leukaemia. Gene 284:73-81
-
(2002)
Gene
, vol.284
, pp. 73-81
-
-
Ruault, M.1
Brun, M.E.2
Ventura, M.3
Roizes, G.4
De Sario, A.5
-
67
-
-
0025764050
-
A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif
-
Ruberti I, Sessa G, Lucchetti S, Morelli G (1991) A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif. EMBO J 10:1787-1791
-
(1991)
EMBO J
, vol.10
, pp. 1787-1791
-
-
Ruberti, I.1
Sessa, G.2
Lucchetti, S.3
Morelli, G.4
-
68
-
-
33645130011
-
Glucose signaling in Saccharomyces cerevisiae
-
Santangelo GM (2006) Glucose signaling in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 70:253-282
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 253-282
-
-
Santangelo, G.M.1
-
69
-
-
0025181421
-
Efficient transcription of the glycolytic gene ADH1 and three translational component genes requires the GCR1 product, which can act through TUF/GRF/RAP binding sites
-
Santangelo GM, Tornow J (1990) Efficient transcription of the glycolytic gene ADH1 and three translational component genes requires the GCR1 product, which can act through TUF/GRF/RAP binding sites. Mol Cell Biol 10:859-862
-
(1990)
Mol Cell Biol
, vol.10
, pp. 859-862
-
-
Santangelo, G.M.1
Tornow, J.2
-
70
-
-
34249003318
-
Glucose responsive regulators of gene expression in S. cerevisiae function at the nuclear periphery via a reverse recruitment mechanism
-
Sarma NJ, Haley T, Barbara KE, Buford D, Willis KA, Santangelo GM (2007) Glucose responsive regulators of gene expression in S. cerevisiae function at the nuclear periphery via a reverse recruitment mechanism. Genetics 175:1127-1135
-
(2007)
Genetics
, vol.175
, pp. 1127-1135
-
-
Sarma, N.J.1
Haley, T.2
Barbara, K.E.3
Buford, D.4
Willis, K.A.5
Santangelo, G.M.6
-
71
-
-
0032902810
-
A human gene, hSGT1, can substitute for GCR2, which encodes a general regulatory factor of glycolytic gene expression in Saccharomyces cerevisiae
-
Sato T, Jigami Y, Suzuki T, Uemura H (1999) A human gene, hSGT1, can substitute for GCR2, which encodes a general regulatory factor of glycolytic gene expression in Saccharomyces cerevisiae. Mol Gen Genet 260:535-540
-
(1999)
Mol Gen Genet
, vol.260
, pp. 535-540
-
-
Sato, T.1
Jigami, Y.2
Suzuki, T.3
Uemura, H.4
-
72
-
-
31544471808
-
Nup-PI: The nucleopore-promoter interaction of genes in yeast
-
Schmid M, Arib G, Laemmli C, Nishikawa J, Durussel T, Laemmli UK (2006) Nup-PI: the nucleopore-promoter interaction of genes in yeast. Mol Cell 21:379-391
-
(2006)
Mol Cell
, vol.21
, pp. 379-391
-
-
Schmid, M.1
Arib, G.2
Laemmli, C.3
Nishikawa, J.4
Durussel, T.5
Laemmli, U.K.6
-
73
-
-
3843124232
-
Dimerization: A versatile switch for oncogenesis
-
So CW, Cleary ML (2004) Dimerization: a versatile switch for oncogenesis. Blood 104:919-922
-
(2004)
Blood
, vol.104
, pp. 919-922
-
-
So, C.W.1
Cleary, M.L.2
-
74
-
-
0042885909
-
Dimerization contributes to oncogenic activation of MLL chimeras in acute leukemias
-
So CW, Lin M, Ayton PM, Chen EH, Cleary ML (2003) Dimerization contributes to oncogenic activation of MLL chimeras in acute leukemias. Cancer Cell 4:99-110
-
(2003)
Cancer Cell
, vol.4
, pp. 99-110
-
-
So, C.W.1
Lin, M.2
Ayton, P.M.3
Chen, E.H.4
Cleary, M.L.5
-
75
-
-
0037335755
-
Molecular architecture of intermediate filaments
-
Strelkov SV, Herrmann H, Aebi U (2003) Molecular architecture of intermediate filaments. Bioessays 25:243-251
-
(2003)
Bioessays
, vol.25
, pp. 243-251
-
-
Strelkov, S.V.1
Herrmann, H.2
Aebi, U.3
-
76
-
-
0027189756
-
GCR1, a transcriptional activator in Saccharomyces cerevisiae, complexes with RAP1 and can function without its DNA binding domain
-
Tornow J, Zeng X, Gao W, Santangelo GM (1993) GCR1, a transcriptional activator in Saccharomyces cerevisiae, complexes with RAP1 and can function without its DNA binding domain. EMBO J 12:2431-2437
-
(1993)
EMBO J
, vol.12
, pp. 2431-2437
-
-
Tornow, J.1
Zeng, X.2
Gao, W.3
Santangelo, G.M.4
-
77
-
-
0035083772
-
Two B or not two B? Overview of the rapidly expanding B-box family of proteins
-
Torok M, Etkin LD (2001) Two B or not two B? Overview of the rapidly expanding B-box family of proteins. Differentiation 67:63-71
-
(2001)
Differentiation
, vol.67
, pp. 63-71
-
-
Torok, M.1
Etkin, L.D.2
-
78
-
-
0025243404
-
Gcr2, a new mutation affecting glycolytic gene expression in Saccharomyces cerevisiae
-
Uemura H, Fraenkel DG (1990) Gcr2, a new mutation affecting glycolytic gene expression in Saccharomyces cerevisiae. Mol Cell Biol 10:6389-6396
-
(1990)
Mol Cell Biol
, vol.10
, pp. 6389-6396
-
-
Uemura, H.1
Fraenkel, D.G.2
-
79
-
-
0345730825
-
The global transcriptional activator of Saccharomyces cerevisiae, Gcr1p, mediates the response to glucose by stimulating protein synthesis and CLN-dependent cell cycle progression
-
Willis KA, Barbara KE, Menon BB, Moffat J, Andrews B, Santangelo GM (2003) The global transcriptional activator of Saccharomyces cerevisiae, Gcr1p, mediates the response to glucose by stimulating protein synthesis and CLN-dependent cell cycle progression. Genetics 165:1017-1029
-
(2003)
Genetics
, vol.165
, pp. 1017-1029
-
-
Willis, K.A.1
Barbara, K.E.2
Menon, B.B.3
Moffat, J.4
Andrews, B.5
Santangelo, G.M.6
-
80
-
-
0035110866
-
Control of eukaryotic transcription elongation
-
REVIEWS1006
-
Winston F (2001) Control of eukaryotic transcription elongation. Genome Biol 2:REVIEWS1006
-
(2001)
Genome Biol
, vol.2
-
-
Winston, F.1
-
81
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, El Bakkoury M, Foury F, Friend SH, Gentalen E, Giaever G, Hegemann JH, Jones T, Laub M, Liao H, Liebundguth N, Lockhart DJ, Lucau-Danila A, Lussier M, M'Rabet N, Menard P, Mittmann M, Pai C, Rebischung C, Revuelta JL, Riles L, Roberts CJ, Ross-MacDonald P, Scherens B, Snyder M, Sookhai-Mahadeo S, Storms RK, Veronneau S, Voet M, Volckaert G, Ward TR, Wysocki R, Yen GS, Yu K, Zimmermann K, Philippsen P, Johnston M, Davis RW (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285:901-906
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
Chu, A.M.11
Connelly, C.12
Davis, K.13
Dietrich, F.14
Dow, S.W.15
El Bakkoury, M.16
Foury, F.17
Friend, S.H.18
Gentalen, E.19
Giaever, G.20
Hegemann, J.H.21
Jones, T.22
Laub, M.23
Liao, H.24
Liebundguth, N.25
Lockhart, D.J.26
Lucau-Danila, A.27
Lussier, M.28
M'Rabet, N.29
Menard, P.30
Mittmann, M.31
Pai, C.32
Rebischung, C.33
Revuelta, J.L.34
Riles, L.35
Roberts, C.J.36
Ross-Macdonald, P.37
Scherens, B.38
Snyder, M.39
Sookhai-Mahadeo, S.40
Storms, R.K.41
Veronneau, S.42
Voet, M.43
Volckaert, G.44
Ward, T.R.45
Wysocki, R.46
Yen, G.S.47
Yu, K.48
Zimmermann, K.49
Philippsen, P.50
Johnston, M.51
Davis, R.W.52
more..
-
82
-
-
0030987407
-
Multicoil: A program for predicting two- and three-stranded coiled coils
-
Wolf E, Kim PS, Berger B (1997) Multicoil: a program for predicting two- and three-stranded coiled coils. Protein Sci 6:1179-1189
-
(1997)
Protein Sci
, vol.6
, pp. 1179-1189
-
-
Wolf, E.1
Kim, P.S.2
Berger, B.3
-
83
-
-
0029083811
-
Predicting oligomerization states of coiled coils
-
Woolfson DN, Alber T (1995) Predicting oligomerization states of coiled coils. Protein Sci 4:1596-1607
-
(1995)
Protein Sci
, vol.4
, pp. 1596-1607
-
-
Woolfson, D.N.1
Alber, T.2
-
84
-
-
3242680774
-
Molecular architecture of the S. cerevisiae SAGA complex
-
Wu PY, Ruhlmann C, Winston F, Schultz P (2004) Molecular architecture of the S. cerevisiae SAGA complex. Mol Cell 15:199-208
-
(2004)
Mol Cell
, vol.15
, pp. 199-208
-
-
Wu, P.Y.1
Ruhlmann, C.2
Winston, F.3
Schultz, P.4
-
85
-
-
0034700134
-
The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes
-
Xue Y, Canman JC, Lee CS, Nie Z, Yang D, Moreno GT, Young MK, Salmon ED, Wang W (2000) The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes. Proc Natl Acad Sci USA 97:13015-13020
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 13015-13020
-
-
Xue, Y.1
Canman, J.C.2
Lee, C.S.3
Nie, Z.4
Yang, D.5
Moreno, G.T.6
Young, M.K.7
Salmon, E.D.8
Wang, W.9
-
86
-
-
0030827114
-
Specialized Rap1p/Gcr1p transcriptional activation through Gcr1p DNA contacts requires Gcr2p, as does hyperphosphorylation of Gcr1p
-
Zeng X, Deminoff SJ, Santangelo GM (1997a) Specialized Rap1p/Gcr1p transcriptional activation through Gcr1p DNA contacts requires Gcr2p, as does hyperphosphorylation of Gcr1p. Genetics 147:493-505
-
(1997)
Genetics
, vol.147
, pp. 493-505
-
-
Zeng, X.1
Deminoff, S.J.2
Santangelo, G.M.3
-
87
-
-
0030929788
-
Buried asparagines determine the dimerization specificities of leucine zipper mutants
-
Zeng X, Herndon AM, Hu JC (1997b) Buried asparagines determine the dimerization specificities of leucine zipper mutants. Proc Natl Acad Sci USA 94:3673-3678
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 3673-3678
-
-
Zeng, X.1
Herndon, A.M.2
Hu, J.C.3
|