The Helix-Coil Kinetics of a Heteropeptide

Journal of Physical Chemistry B

Volumn 104, Issue 2, 2000, Pages 378-389

  Thompson, Peggy A ^a,b   Muñoz, Victor ^a   Jas, Gouri S ^a   Henry, Eric R ^a   Eaton, William A ^a   Hofrichter, James ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

^b Biopraxis Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000137407     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp990292u     Document Type: Article

References (50)

1. Muñoz, V.; Henry, E. R.; Hofrichter, J.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 5872-5879.
2. Marqusee, S., Robbins, V. H., Baldwin, R. L. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 5286-5290. Chakrabartty, A.; Baldwin, R. L. Adv. Protein Chem. 1995, 46, 141-176.
3. Marqusee, S., Robbins, V. H., Baldwin, R. L. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 5286-5290. Chakrabartty, A.; Baldwin, R. L. Adv. Protein Chem. 1995, 46, 141-176.
4. Muñoz, V.; Serrano, L. Curr. Opin. Biotechnol. 1995, 6, 382-386.
5. Muñoz, V.; Serrano, L. J. Mol. Biol. 1995, 245, 275-296.
6. Serrano, L. Adv. Protein Chem., in press.
7. Williams, S.; Causgrove, T. P.; Gilmanshin, R.; Fang, K. S.; Callender, R. H.; Woodruff, W. H.; Dyer, R. B. Biochemistry 1996, 35, 691.
8. Ballew, R. M.; Sabelko, J.; Grubele, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 5759-5764. Ballew, R. M.; Sabelko, J.; Reiner, C.; Grubele, M. Rev. Sci. Instrum. 1996, 67, 3694-3699.
9. Ballew, R. M.; Sabelko, J.; Grubele, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 5759-5764. Ballew, R. M.; Sabelko, J.; Reiner, C.; Grubele, M. Rev. Sci. Instrum. 1996, 67, 3694-3699.
10. Thompson, P. A. In Techniques in Protein Chemistry; Marshak, D. R., Ed.; Academic Press: San Diego, CA, 1997; pp 735-743.
11. Thompson, P. A.; Eaton, W. A.; Hofrichter, J. Biochemistry 1997, 36, 9200.
12. Schellman, J. A. J. Phys. Chem. 1958, 62, 1485-1494.
13. Zimm, B. H.; Bragg, J. K. J. Chem. Phys. 1959, 31, 526-535.
14. Lifson, S.; Roig, A. J. Chem. Phys. 1961, 34, 1963-1974.
15. Schwarz, G. J. Mol. Biol. 1965, 11, 64-77.
16. Gruenewald, B.; Nicola, C. U.; Lustig, A.; Schwarz, G.; Klump, H. Biophys. Chem. 1979, 9, 137-147.
17. Shoemaker, K. R.; Fairman, R.; Schultz, D. A.; Robertson, A. D.; York, E. J.; Stewart, J. M.; Baldwin, R. L. Biopolymers 1990, 29, 1-11.
18. Fernandez-Recio, J.; Vasquez, A.; Civera, C.; Sevilla, P.; Sancho, J. J. Mol. Biol. 1997, 267, 184-197.
19. Shinitizky, M.; Goldman, R. Eur. J. Biochem. 1967, 3, 129-144.
20. Steiner, R.; Kirby, E. P. J. Phys. Chem. 1969, 73, 4130-4135.
21. Gill, S. C.; von Hippel, P. H. Anal. Biochem. 1989, 182, 319-326.
22. Scholtz, J. M.; Qian, H.; York, E. J.; Stewart, J. M.; Baldwin, R. L. Biopolymers 1991, 31, 1463-1470.
23. Chakrabartty, A.; Kortemme, T.; Padmanabhan, S.; Baldwin, R. L. Biochemistry 1993, 32, 5560-5563.
24. Tinoco, I.; Woody, R. W.; Bradley,. D. F. J. Chem Phys. 1963, 38, 1317-1325.
25. Madison, V.; Schellman, J. Biopolymers 1972, 11, 1041-1076.
26. Manning, M. C.; Woody, R. W. Biopolymers 1991, 31: 569-586.
27. Chen, T.-H.; Yang, J. T.; Chau, K. H. Biochemistry 1974, 13, 3350-3359.
28. Much of this work is summarized in Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed; (Plenum Press: New York, 1996) particularly in the chapters: Theory of Circular Dichroism of Proteins, by R. W. Woody); Determination of Protein Secondary Structure, by S. Y. Venyaminov and J. T. Yang; Aromatic and Cystine Side Chain Circular Dichroism of Proteins, by R. W. Woody and A. K. Dunker, and CD Spectroscopy and the Helix-Coil Transition in Peptides and Polypeptides, by N. R. Kallenbach, P. Lyu and H. Zhou.
29. Much of this work is summarized in Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed; (Plenum Press: New York, 1996) particularly in the chapters: Theory of Circular Dichroism of Proteins, by R. W. Woody); Determination of Protein Secondary Structure, by S. Y. Venyaminov and J. T. Yang; Aromatic and Cystine Side Chain Circular Dichroism of Proteins, by R. W. Woody and A. K. Dunker, and CD Spectroscopy and the Helix-Coil Transition in Peptides and Polypeptides, by N. R. Kallenbach, P. Lyu and H. Zhou.
30. Much of this work is summarized in Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed; (Plenum Press: New York, 1996) particularly in the chapters: Theory of Circular Dichroism of Proteins, by R. W. Woody); Determination of Protein Secondary Structure, by S. Y. Venyaminov and J. T. Yang; Aromatic and Cystine Side Chain Circular Dichroism of Proteins, by R. W. Woody and A. K. Dunker, and CD Spectroscopy and the Helix-Coil Transition in Peptides and Polypeptides, by N. R. Kallenbach, P. Lyu and H. Zhou.
31. Much of this work is summarized in Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed; (Plenum Press: New York, 1996) particularly in the chapters: Theory of Circular Dichroism of Proteins, by R. W. Woody); Determination of Protein Secondary Structure, by S. Y. Venyaminov and J. T. Yang; Aromatic and Cystine Side Chain Circular Dichroism of Proteins, by R. W. Woody and A. K. Dunker, and CD Spectroscopy and the Helix-Coil Transition in Peptides and Polypeptides, by N. R. Kallenbach, P. Lyu and H. Zhou.
32. Much of this work is summarized in Circular Dichroism and the Conformational Analysis of Biomolecules; Fasman, G. D., Ed; (Plenum Press: New York, 1996) particularly in the chapters: Theory of Circular Dichroism of Proteins, by R. W. Woody); Determination of Protein Secondary Structure, by S. Y. Venyaminov and J. T. Yang; Aromatic and Cystine Side Chain Circular Dichroism of Proteins, by R. W. Woody and A. K. Dunker, and CD Spectroscopy and the Helix-Coil Transition in Peptides and Polypeptides, by N. R. Kallenbach, P. Lyu and H. Zhou.
33. Robbins, B. J.; Fleming, G. R.; Beddard, G. S.; Robinson, G. W.; Thistlethwaite, P. J.; Woolfe, G. J. J. Am. Chem Soc. 1980, 102, 6271-6279.
34. 5-21.
35. Muñoz, V.; Thompson, P. A.; Hofrichter, J.; Eaton, W. A. Nature 1997, 390, 196-199.
36. While the model could, in principle, also incorporate a number of other contributions to helix stability, such as the effects of capping and charge-dipole interactions, our database at this time is too limited to permit us to evaluate such effects.
37. Young, W. S.; Brooks, C. L. J. Mol. Biol. 1996, 259, 560-572.
38. Loewenthal, R.; Sancho, J.; Ferscht, A. R. J. Mol. Biol. 1992, 224, 759-770.
39. Anderson, A. G.; Hermans, J. Proteins 1988, 3, 262-265.
40. Tobias, D. J.; Brooks, C. L. Biochemistry 1991, 30, 6059-6070.
41. Soman, K. V.; Karimi, A.; Case, D. A. Biopolymers 1991, 31, 1351-1361.
42. Daggett, V.; Levitt, M. J. Mol. Biol. 1992, 223, 1121-1138.
43. Brooks, C. L.; Case, D. A. Chem. Rev. 1993, 93, 2487-2502.
44. Hirst, J. D.; Brooks, C. L. Biochemistry 1995, 34, 7614-7621.
45. 5-21 which can be detected using our fluorescence probe, as expected from our model.
46. Jas, G. S., et al. (Manuscript in preparation).
47. Mohanty, D.; Elber, R.; Thirumalai, D.; Beglov, D.; Roux, B. J. Mol. Biol. 1997, 272, 423-442.
48. Sung, S.-S.; Wu, X.-W. Biopolymers 1997, 42, 633-644.
49. Abraham, F. F. J. Chem. Phys. 1969, 51, 1632-1638.
50. Hofrichter, J.; Ross, P. D.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 1974, 71, 4864-4868.