Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 25, 2000, Pages 13518-13522

  Mayor, Ugo ^a   Johnson, Christopher M ^a   Daggett, Valerie ^b   Fersht, Alan R ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Fast unfolding; Helix docking; Molecular dynamics; Residual structure

Indexed keywords

HOMEODOMAIN PROTEIN;

ARTICLE; HALF LIFE TIME; HIGH TEMPERATURE PROCEDURES; MEASUREMENT; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN FOLDING; SIMULATION;

HOMEODOMAIN PROTEINS; KINETICS; PROTEIN FOLDING; TRANSCRIPTION FACTORS;

EID: 0034610360     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.250473497     Document Type: Article

References (43)

1. Chamberlain, A. K. & Marqusee, S. (2000) Adv. Protein Chem. 53, 283-328.
2. Fersht, A. R. (1998) Structure and Mechanism in Protein Science (Freeman, New York).
3. Jackson, S. E. & Fersht, A. R. (1991) Biochemistry 30, 10428-10435.
4. Schindler, T., Herrler, M., Marahiel, M. A. & Schmid, F. X. (1995) Nat. Struct. Biol. 2, 663-673.
5. Huang, G. S. & Oas, T. G. (1995) Proc. Natl. Acad. Sci. USA 92, 6878-6882.
6. Spector, S. & Raleigh, D. P. (1999) J. Mol. Biol. 293, 763-768.
7. Duan, Y. & Kollman, P. A. (1998) Science 282, 740-744.
8. Oliveberg, M., Tan, Y. J. & Fersht, A. R. (1995) Proc. Natl. Acad. Sci. USA 92, 8926-8929.
9. Wong, K. B., Clarke, J., Bond, C. J., Neira, J. L., Freund, S. M. V., Fersht, A. R. & Daggett, V. (2000) J. Mol. Biol. 296, 1257-1282.
10. Li, A. & Daggett, V. (1994) Proc. Natl. Acad. Sci. USA 91, 10430-10434.
11. Li, A. & Daggett, V. (1996) J. Mol. Biol. 257, 412-429.
12. Alonso, D. O. & Daggett, V. (1995) J. Mol. Biol. 247, 501-520.
13. Alonso, D. O. & Daggett, V. (1998) Protein Sci. 7, 860-874.
14. Bieri, O., Wirz, J., Hellrung, B., Schutkowski, M., Drewello, M. & Kiefhaber, T. (1999) Proc. Natl. Acad. Sci. USA 96, 9597-9601.
15. Hagen, S. J., Hofrichter, J., Szabo, A. & Eaton, W. A. (1996) Proc. Natl. Acad. Sci. USA 93, 11615-11617.
16. Eaton, W. A., Munoz, V., Hagen, S. J., Jas, G. S., Lapidus, L. J., Henry, E. R. & Hofrichter, J. (2000) Annu. Rev. Biophys. Biomol. Struct. 29, 327-359.
17. Clarke, N. D., Kissinger, C. R., Desjarlais, J., Gilliland, G. L. & Pabo, C. O. (1994) Protein Sci. 3, 1779-1787.
18. Harrison, S. C. & Aggarwal, A. K. (1990) Annu. Rev. Biochem. 59, 933-969.
19. Miroux, B. & Walker, J. E. (1996) J. Mol. Biol. 260, 289-298.
20. Ades, S. E. & Sauer, R. T. (1994) Biochemistry 33, 9187-9194.
21. Privalov, P. L. & Potekhin, S. A. (1986) Methods Enzymol. 131, 4-51.
22. Rigler, R., Ratal, C.-B. & Jovin, T. M. (1974) Rev. Sci. Instrum. 45, 580-588.
23. Levitt, M. (1990) ENCAD, Energy Calculations and Dynamics (Molecular Applications Group, Palo Alto, CA).
24. Levitt, M., Hirshberg, M., Sharon, R. & Daggett, V. (1995) Comp. Phys. Commun. 91, 215-231.
25. Levitt, M., Hirshberg, M., Sharon, R., Laidig, K. E. & Daggett, V. (1997) J. Phys. Chem. 101, 5051-5061.
26. Kell, G. S. (1967) J. Chem. Eng. Data 12, 66-68.
27. Haar, L., Gallagher, J. S. & Kell, G. S. (1984) NBS/NRC Steam Tables (Hemisphere Publications, Washington, DC).
28. Makhatadze, G. I. & Privalov, P. L. (1995) Adv. Protein Chem. 47, 307-425.
29. Myers, J. K., Pace, C. N. & Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148.
30. Matouschek, A., Matthews, J. M., Johnson, C. M. & Fersht, A. R. (1994) Protein Eng. 7, 1089-1095.
31. Eyring, H. (1935) Chem. Rev. 17, 65-77.
32. Matouschek, A., Otzen, D. E., Itzhaki, L. S., Jackson, S. E. & Fersht, A. R. (1995) Biochemistry 34, 13656-13662.
33. Nölting, B., Golbik, R., Neira, J. L., Soler-Gonzalez, A. S., Schreiber, G. & Fersht, A. R. (1997) Proc. Natl. Acad. Sci. USA 94, 826-830.
34. Burton, R. E., Myers, J. K. & Oas, T. G. (1998) Biochemistry 37, 5337-5343.
35. Bond, C. J., Wong, K. B., Clarke, J., Fersht, A. R. & Daggett, V. (1997) Proc. Natl. Acad. Sci. USA 94, 13409-13413.
36. Wong, K. B., Freund, S. M. V. & Fersht, A. R. (1996) J. Mol. Biol. 259, 805-818.
37. Fersht, A. R. (1995) Proc. Natl. Acad. Sci. USA 92, 10869-10873.
38. Fersht, A. R. & Shakhnovich, E. I. (1998) Curr. Biol. 8, R478-R479.
39. Muñoz, V. & Serrano, L. (1996) Folding Des. 1, R71-R77.
40. López-Hernández, E., Cronet, P., Serrano, L. & Muñoz, V. (1997) J. Mol. Biol. 266, 610-620.
41. Viguera, A. R., Villegas, V., Avilés, F. X. & Serrano, L. (1997) Folding Des. 2, 23-33.
42. Ferrin, T. E., Huang, C. C., Jarvis, L. E. & Langridge, R. (1988) J. Mol. Graphics 6, 13-27.
43. Kabsch, W. & Sander, C. (1983) Biopolymers 22, 2577-2637.