Design and preparation of β-sheet forming repetitive and block-copolymerized polypeptides

Biomacromolecules

Volumn 8, Issue 5, 2007, Pages 1487-1497

  Higashiya, Seiichiro ^a   Topilina, Natalya I ^a   Ngo, Silvana C ^b   Zagorevskii, Dmitri ^b   Welch, John T ^a  

^a STATE UNIVERSITY OF NEW YORK   (United States)

^b Research Rensselaer Polytechnic Institute   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BLOCK COPOLYMERS; COPOLYMERIZATION; DNA; ELECTROPHORESIS; ESCHERICHIA COLI; GENES; MASS SPECTROMETRY; MOLECULAR WEIGHT; MONOMERS;

BLOCK-COPOLYMERIZED POLYPEPTIDES; NITRILOACETIC ACID;

POLYPEPTIDES;

AMINO ACID; COPOLYMER; DNA; MONOMER; NICKEL; NITRILOTRIACETIC ACID; POLYPEPTIDE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BETA SHEET; CARBOXY TERMINAL SEQUENCE; CHEMICAL STRUCTURE; CHROMATOGRAPHY; CONTROLLED STUDY; CORRELATION ANALYSIS; ELECTROPHORETIC MOBILITY; ESCHERICHIA COLI; GEL ELECTROPHORESIS; GENE CASSETTE; GENE LIBRARY; GENE VECTOR; GENETIC CODE; MASS SPECTROMETRY; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN PROCESSING;

AMINO ACID SEQUENCE; CHROMATOGRAPHY; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; GENE LIBRARY; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; NITRILOTRIACETIC ACID; ORGANOMETALLIC COMPOUNDS; PEPTIDE LIBRARY; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; REPETITIVE SEQUENCES, AMINO ACID;

ESCHERICHIA COLI;

EID: 34249913697     PISSN: 15257797     EISSN: None     Source Type: Journal    
DOI: 10.1021/bm061098y     Document Type: Article

References (72)

1. (a)Protein-Based Materials; McGrath, K. P.,; Kaplan, D., Eds.; Birkhauser: Boston, MA, 1999.
2. (b) Zhang, S. Nat. Biotechnol. 2003, 21, 1171-1178.
3. (c) Langer, R.; Tirell, D. A. Nature 2004, 428, 487-492.
4. (d) Ratner, B. D.; Bryant, S. J. Annu. Rev. Biomed. Eng. 2004, 6, 41-75.
5. (e) Wright, E. R.; Conticello, V. P. Adv. Drug Delivery Rev. 2002, 54, 1057-1073.
6. (f) Urry, D. W. Biorefineries: Ind. Processes Prod. 2006, 2, 217-251.
7. (a) Lee, T. A. T.; Cooper, A.; Apkarian, R. P.; Conticello, V. P. Adv. Mater. 2000, 12, 1105-1110.
8. (b) Wright, E. R.; McMillan, R. A.; Cooper, A.; Apkarian, R, P.; Conticello, V. P. Adv. Funct. Mater. 2002, 2, 149-154.
9. (c) Panitch, A.; Yamaoka, T.; Fournier, M. J.; Mason, T. L.; Tirrell, D: A. Macromolecules 1999, 32, 1701-1703.
10. (d) Petka, W. A.; Harden, J. L.; McGrath, K. P.; Wirtz, D.; Tirrell, D. A. Science 1998, 281, 389-392.
11. (e) Winkler, S.; Wilson, D.; Kaplan, D. L. Biochemistry 2000, 39, 12739-12746.
12. (f) Winkler, S.; Szela, S.; Avtges, P.; Valluzzi, R.; Kirschner, D. A.; Kaplan, D. L. Int. J. Biol. Macromol. 1999, 24, 265-270.
13. (a) Haider, M.; Megeed, Z.; Ghandehari, H. J. Controlled Release 2004, 95, 1-26.
14. (b) Haider, M.; Leung, V.; Ferrari, F.; Crissman, J.; Cappello, J.; Gbandehari, H. Mol. Pharmaceutics 2005, 2, 139-150.
15. (c) Cappello, J.; Crissman, J. W.; Crissman, M.; Ferrari, F. A.; Textor, G.; Wallis, O.; Whitledge, J. R.; Zhou, X.; Burman, D.; Aukerman, L.; Stedronsky, E. R. J. Controlled Release 1998, 53, 105-117.
16. (d) Urry, D. W.; Woods, T. C.; Hayes, L. C.; Xu, J.; McPherson, D. T.; Parker, T. M.; Iwarna, M.; Furutan, M.; Hayashi, T.; Murata, M. Tissue Eng. Novel Delivery Syst. 2004, 31-54.
17. (a) McPerson, D. T.; Xu, J.; Urry, D. W. Protein Expression Purif. 1996, 7, 51-57.
18. (b) Meyer, D. E.; Trabbic-Carlson, K.; Chilkoti, A. Biotechnol. Prog. 2001, 17, 720-728.
19. (c) Meyer, D. E.; Chilkoti, A. Nat. Biotechnol. 1999, 17, 1112-1115.
20. (a) Zurdo, J. Protein Pept. Lett. 2005, 12, 171-187.
21. (b) Lednev, I. K.; Ermolenkov, V. V.; Higashiya, S.; Popova, L. A.; Topilina, N. I.; Welch, J. T. Biophys. J. 2006, 91, 3805-3818.
22. (a) Scherzinger, E.; Sittler, A.; Schweiger, K.; Heiser, V.; Lurz, R.; Hasenbank, R.; Bates, G. P.; Lehrach, H.; Wanker, E. E. Proc. Natl. Acad. Sci. U.S.A. 1999 96, 4604-4609.
23. (b) Lynn, D. G.; Meredith, S. C. J. Struct. Biol. 2000, 130, 153-173.
24. (c) Fraser, P. E.; Nguyen, J. T.; Surewicz, W. K.; Kirschner, D. A. Biophys. A 1991, 60, 1190-1201.
25. (d) Sunde, M.; Serpell, L. C.; Bartlam, M.; Fraser, P. E.; Pepys, M. B.; Blake, C. C. J. Mol. Biol. 1997, 273, 729-739.
26. (e) Jaikaran, E. T.; Higham, C. E.; Serpell, L. C.; Zurdo, J.; Gross, M.; Clark, A.; Fraser, P. E. J. Mol. Biol. 2001, 308, 515 -525.
27. (f) Topilina, N. I.; Higashiya, S.; Rana, N.; Ermolenkov, V. V.; Kossow, C.; Carlsen, A.; Ngo, S. C.; Wells, C. C.; Eisenbraun, E. T.; Dunn, K. A.; Lednev, I. K.; Geer, R. E.; Kaloyeros, A. E.; Welch, J. T. Biomacromolecules 2006, 7, 1104-1111.
28. (a) Mershin, A.; Cook, B.; Kaiser, L.; Zhang, S. Nat. Biotechnol. 2005, 23, 1379-1380.
29. (b) Zhao, X.; Zhang, S. Trends Biotechnol. 2004, 22, 470-476.
30. (c) Lamm, M. S.; Rajagopal, K.; Schneider, J. P.; Pochan, D. J. J. Am. Chem. Soc. 2005, 127, 16692-16700.
31. (d) Aggeli, A.; Bell, M.; Boden, N.; Carrick, L. M.; Strong, A. E. Angew. Chem., Int. Ed. 2003, 42, 5603-5606.
32. (e) Maskarinec, S. A.; Tirrell, D. A. Curr. Opin. Biotechnol. 2005, 16, 422-426.
33. (f) Clark, J.; Singer, E. M.; Korns, D. R.; Smith, S. Biotechniques 2004, 36, 992-996, 998-1001.
34. (a) Ferrari, F. A.; Cappello, J. In Protein-Based Materials; McGrath, K. P., Kaplan, D., Eds.; Birkhauser: Boston, MA, 1997; pp 37-60.
35. (b) Tirrell, J. G.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. In Protein-Based Materials; McGrath, K. P., Kaplan, D., Eds.; Birkhauser: Boston, MA, 1997; pp 61-99.
36. (c) McPherson, D. T.; Morrow, C.; Minehan, D. S.; Wu, J.; Hunter, E.; Urry, D. W. Biotechnol. Prog. 1992, 8, 347-352.
37. (d) Feeney, K. A.; Tatham, A. S,; Gilbert, S. M.; Fido, R. J.; Halford, N. G.; Shewry, P. R. Biochim. Biophys. Acta 2001, 1546, 346-355.
38. (e) Kostal, J.; Mulchandani, A.; Chen, W. Macromolecules 2001, 34, 2257-2261.
39. (f) Cappello, J.; Crissman, J.; Dorman, M.; Mikolajczak, M.; Textor, Marquet, M.; Ferrari, F. Biotechnol. Prog. 1990, 6, 198-202.
40. (g) Creel, H. S.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. Macromolecules 1991, 24, 1213-1214.
41. (h) Fukushima, Y. Biopolymers 1998, 45, 269-279.
42. (i) McMillan, R. A.; Lee, T. A. T.; Conticello, V. P. Macromolecules 1999, 32, 3643-3648.
43. (j) McGrath, K. P.; Tirrell, D. A.; Kawai, M.; Mason, T. L.; Fournier, M. J. Biotechnol. Prog. 1990, 6, 188-192.
44. (k) Padgett, K. A.; Sorge, J. A. Gene 1996, 16, 31-35.
45. (i) Zhou, Y.; Wu, S.; Conticello, V. P. Biomacromolecules 2001, 2, 111-125.
46. (m) Ferrari, F. A.; Richardson, C.; Chambers, J.; Causey, S. C.; Pollock, T. J.; Capello, J.; Crissman, J. W. U.S. patent 5,243,038, 1993.
47. (n) Lixin, M. Biomacromolecules 2006, 7, 2099-2107.
48. (a) Won, J.; Barron, A. E., Macromolecules 2002, 35, 8281-8287.
49. (b) Meyer, Dan E.; Chilkoti, A. Biomacromolecules 2002, 3, 357-367.
50. Sambrook, J.; Russel, D. W. Molecular Cloning, 3rd ed.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 2001.
51. (a) Krejechi, M. T.; Atkins, E. D. T.; Waddon, A. J.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. Science 1994, 265, 1427-1432.
52. (b) Wang, J.; Parkhe, A. D.; Tirrell, D. A.; Thompson, L. K. Macromolecules 1996, 29, 1548-1553.
53. (c) Cantor, E. J.; Atkins, E. D. T.; Cooper, S. J.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. J. Biochem. 1997, 122, 217-225.
54. (d) Panitch, A.; Matsuki, K.; Cantor, E. J.; Cooper, S. J.; Atkins, E. D. T.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. Macromolecules 1997, 30, 42-49.
55. Amersham Pharmacia Biotech. HisTrap Kit (Product Code 18-1212-00 AB), Wikströms, Sweden, 2000.
56. (a) Grimm, R.; Huber, R.; Neumeier, T.; Seidl, A.; Haslbeck, M.; Seiberta, F. S. Anal. Biochem. 2004, 330, 140-144.
57. (b) Whitelegge, J. P.; Le Coutre, J.; Lee, J. C.; Engel, C. K.; Privé, G. G.; Faull, K. F.; Kaback, H. R. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 10695-10698.
58. (a) Goeden-Wood, N. L.; Conticello, V. P.; Muller, S. J.; Keasling, J. D. Biomacromolecules 2002, 3, 874-879.
59. (b) Hecht, M. H.; Das, A.; Go, A.; Bradley, L. H.; Wei, Y. Protein Sci. 2004, 13, 1711-1723.
60. (c) Brown, C. L.; Aksay, I. A.; Saville, D. A.; Hecht, M. H. J. Am. Chem. Soc. 2002, 124, 6846-6848.
61. (d) Wang, W.; Hecht, M. H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 2760-2765.
62. (e) Xu, G.; Wang, W.; Groves, J. T.; Hecht, M. H. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 3652-3657.
63. (f) West, M. W.; Wang, W.; Patterson, J.; Mancias, J. D.; Beasley, I. R.; Hecht, M. H. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 11211-11216.
64. (g) West, M. W.; Beasley, J. R.; Hecht, M. H. Protein Eng. 1997, 10 Suppl., 38.
65. (h) Hecht, M. H. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 8729-30.
66. (i) Bradley, L. H.; Thumfort, P. P.; Hecht, M. H. In Protein Design; Guerois, R., de la Paz, M. L., Eds.; Humana: Totowa, NJ, 2006; pp 53-69.
67. (a) Krejchi, M. T.; Cooper, S. J.; Deguchi, Y.; Atkins, E. D. T.; Fournier, M. J. Mason, T. L.; Tirrell, D. A. Macromolecules 1997, 30, 5012-5024.
68. (b) Parkhe, A. D.; Cooper, S. J.; Atkins, E. D. T.; Fournier, M. J. Mason, T. L.; Tirrell, D. A. Int. J. Biol. Macromol. 1998, 23, 251-258.
69. (c) Smeenk, J. M.; Otten, M. B. J.; Thies, J.; Tirrell, D. A.; Stunnenberg, H. G.; van Hest, J. C. M. Angew. Chem., int. Ed. 2005, 44, 1968-1971.
70. (d) Yoshikawa, E.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. Macromolecules 1994, 27, 5471-5475.
71. (e) Dougherty, M. J. Ph.D. Dissertation, University of Massachusetts at Amherst, 1993.
72. Zhen, L.; Janusz, P. J. Proteome Res. 2004, 3, 567-571.