-
1
-
-
0035749903
-
Implications of SH3 domain structure and dynamics for protein regulation and drug design
-
11892788
-
Implications of SH3 domain structure and dynamics for protein regulation and drug design. WH Gmeiner DA Horita, Cell Biochem Biophys 2001 35 127 140 11892788
-
(2001)
Cell Biochem Biophys
, vol.35
, pp. 127-140
-
-
Gmeiner, W.H.1
Horita, D.A.2
-
2
-
-
0033950079
-
The importance of being proline: The interaction of proline-rich motifs in signaling proteins with their cognate domains
-
10657980
-
The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains. BK Kay MP Williamson M Sudol, Faseb J 2000 14 231 241 10657980
-
(2000)
Faseb J
, vol.14
, pp. 231-241
-
-
Kay, B.K.1
Williamson, M.P.2
Sudol, M.3
-
3
-
-
0035030510
-
SH3 domains: Complexity in moderation
-
11256992
-
SH3 domains: complexity in moderation. BJ Mayer, J Cell Sci 2001 114 1253 1263 11256992
-
(2001)
J Cell Sci
, vol.114
, pp. 1253-1263
-
-
Mayer, B.J.1
-
4
-
-
0034773599
-
SH2 and SH3 domains as targets for anti-proliferative agents
-
11682324
-
SH2 and SH3 domains as targets for anti-proliferative agents. M Vidal V Gigoux C Garbay, Crit Rev Oncol Hematol 2001 40 175 186 11682324
-
(2001)
Crit Rev Oncol Hematol
, vol.40
, pp. 175-186
-
-
Vidal, M.1
Gigoux, V.2
Garbay, C.3
-
5
-
-
0027936659
-
Characterization of the interaction of natural proline-rich peptides with five different SH3 domains
-
8086409
-
Characterization of the interaction of natural proline-rich peptides with five different SH3 domains. AR Viguera JL Arrondo A Musacchio M Saraste L Serrano, Biochemistry 1994 33 10925 10933 8086409
-
(1994)
Biochemistry
, vol.33
, pp. 10925-10933
-
-
Viguera, A.R.1
Arrondo, J.L.2
Musacchio, A.3
Saraste, M.4
Serrano, L.5
-
6
-
-
0029782121
-
Rational design of specific high-affinity peptide ligands for the Abl-SH3 domain
-
8718852
-
Rational design of specific high-affinity peptide ligands for the Abl-SH3 domain. MT Pisabarro L Serrano, Biochemistry 1996 35 10634 10640 8718852
-
(1996)
Biochemistry
, vol.35
, pp. 10634-10640
-
-
Pisabarro, M.T.1
Serrano, L.2
-
7
-
-
0035907348
-
The role of the Src homology 3-Src homology 2 interface in the regulation of Src kinases
-
11278857
-
The role of the Src homology 3-Src homology 2 interface in the regulation of Src kinases. ST Arold TS Ulmer TD Mulhern JM Werner JE Ladbury ID Campbell ME Noble, J Biol Chem 2001 276 17199 17205 11278857
-
(2001)
J Biol Chem
, vol.276
, pp. 17199-17205
-
-
Arold, S.T.1
Ulmer, T.S.2
Mulhern, T.D.3
Werner, J.M.4
Ladbury, J.E.5
Campbell, I.D.6
Noble, M.E.7
-
8
-
-
0036420970
-
How SH3 domains recognize proline
-
12461825
-
How SH3 domains recognize proline. A Musacchio, Adv Protein Chem 2002 61 211 268 12461825
-
(2002)
Adv Protein Chem
, vol.61
, pp. 211-268
-
-
Musacchio, A.1
-
9
-
-
0031418201
-
SH3 domains and drug design: Ligands, structure, and biological function
-
9566119
-
SH3 domains and drug design: ligands, structure, and biological function. DC Dalgarno MC Botfield RJ Rickles, Biopolymers 1997 43 383 400 9566119
-
(1997)
Biopolymers
, vol.43
, pp. 383-400
-
-
Dalgarno, D.C.1
Botfield, M.C.2
Rickles, R.J.3
-
10
-
-
0032509175
-
Exploiting the basis of proline recognition by SH3 and WW domains: Design of N-substituted inhibitors
-
9851931
-
Exploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors. JT Nguyen CW Turck FE Cohen RN Zuckermann WA Lim, Science 1998 282 2088 2092 9851931
-
(1998)
Science
, vol.282
, pp. 2088-2092
-
-
Nguyen, J.T.1
Turck, C.W.2
Cohen, F.E.3
Zuckermann, R.N.4
Lim, W.A.5
-
11
-
-
0029753011
-
Structural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase
-
8961927
-
Structural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase. DA Renzoni DJ Pugh G Siligardi P Das CJ Morton C Rossi MD Waterfield ID Campbell JE Ladbury, Biochemistry 1996 35 15646 15653 8961927
-
(1996)
Biochemistry
, vol.35
, pp. 15646-15653
-
-
Renzoni, D.A.1
Pugh, D.J.2
Siligardi, G.3
Das, P.4
Morton, C.J.5
Rossi, C.6
Waterfield, M.D.7
Campbell, I.D.8
Ladbury, J.E.9
-
12
-
-
0032555743
-
Crystal structure of the Abl-SH3 domain complexed with a designed high-affinity peptide ligand: Implications for SH3-ligand interactions
-
9698566
-
Crystal structure of the Abl-SH3 domain complexed with a designed high-affinity peptide ligand: Implications for SH3-ligand interactions. MT Pisabarro L Serrano M Wilmanns, J Mol Biol 1998 281 513 521 9698566
-
(1998)
J Mol Biol
, vol.281
, pp. 513-521
-
-
Pisabarro, M.T.1
Serrano, L.2
Wilmanns, M.3
-
13
-
-
0034008847
-
Searching for specificity in SH domains
-
10662684
-
Searching for specificity in SH domains. JE Ladbury S Arold, Chem Biol 2000 7 R3 R8 10662684
-
(2000)
Chem Biol
, vol.7
-
-
Ladbury, J.E.1
Arold, S.2
-
14
-
-
0035798419
-
The role of backbone motions in ligand binding to the c-Src SH3 domain
-
11697910
-
The role of backbone motions in ligand binding to the c-Src SH3 domain. C Wang NH Pawley LK Nicholson, J Mol Biol 2001 313 873 887 11697910
-
(2001)
J Mol Biol
, vol.313
, pp. 873-887
-
-
Wang, C.1
Pawley, N.H.2
Nicholson, L.K.3
-
15
-
-
2942733479
-
Thermodynamics of binding to SH3 domains: The energetic impact of polyproline II (PII) helix formation
-
15196021
-
Thermodynamics of binding to SH3 domains: the energetic impact of polyproline II (PII) helix formation. JC Ferreon VJ Hilser, Biochemistry 2004 43 7787 7797 15196021
-
(2004)
Biochemistry
, vol.43
, pp. 7787-7797
-
-
Ferreon, J.C.1
Hilser, V.J.2
-
16
-
-
0742306902
-
Thermodynamic dissection of the binding energetics of proline-rich peptides to the Abl-SH3 domain: Implications for rational ligand design
-
14757063
-
Thermodynamic dissection of the binding energetics of proline-rich peptides to the Abl-SH3 domain: implications for rational ligand design. A Palencia ES Cobos PL Mateo JC Martinez I Luque, J Mol Biol 2004 336 527 537 14757063
-
(2004)
J Mol Biol
, vol.336
, pp. 527-537
-
-
Palencia, A.1
Cobos, E.S.2
Mateo, P.L.3
Martinez, J.C.4
Luque, I.5
-
17
-
-
0032553012
-
RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef
-
9778343
-
RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef. S Arold R O'Brien P Franken MP Strub F Hoh C Dumas JE Ladbury, Biochemistry 1998 37 14683 14691 9778343
-
(1998)
Biochemistry
, vol.37
, pp. 14683-14691
-
-
Arold, S.1
O'Brien, R.2
Franken, P.3
Strub, M.P.4
Hoh, F.5
Dumas, C.6
Ladbury, J.E.7
-
18
-
-
0037372297
-
The effect of the polyproline II (PPII) conformation on the denatured state entropy
-
12592015
-
The effect of the polyproline II (PPII) conformation on the denatured state entropy. JC Ferreon VJ Hilser, Protein Sci 2003 12 447 457 12592015
-
(2003)
Protein Sci
, vol.12
, pp. 447-457
-
-
Ferreon, J.C.1
Hilser, V.J.2
-
19
-
-
0037468633
-
Structural cooperativity in the SH3 domain studied by site-directed mutagenesis and amide hydrogen exchange
-
12650939
-
Structural cooperativity in the SH3 domain studied by site-directed mutagenesis and amide hydrogen exchange. S Casares M Sadqi O Lopez-Mayorga JC Martinez F Conejero-Lara, FEBS Lett 2003 539 125 130 12650939
-
(2003)
FEBS Lett
, vol.539
, pp. 125-130
-
-
Casares, S.1
Sadqi, M.2
Lopez-Mayorga, O.3
Martinez, J.C.4
Conejero-Lara, F.5
-
21
-
-
0028941934
-
A calorimetric study of the thermal-stability of Barstar and its interaction with Barnase
-
7711042
-
A calorimetric study of the thermal-stability of Barstar and its interaction with Barnase. JC Martinez VV Filimonov PL Mateo G Schreiber AR Fersht, Biochemistry 1995 34 5224 5233 7711042
-
(1995)
Biochemistry
, vol.34
, pp. 5224-5233
-
-
Martinez, J.C.1
Filimonov, V.V.2
Mateo, P.L.3
Schreiber, G.4
Fersht, A.R.5
-
23
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
12580598
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information. C Dominguez R Boelens A Bonvin, J Am Chem Soc 2003 125 1731 1737 12580598
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.3
-
24
-
-
11144243217
-
Hydrogen exchange and ligand binding: Ligand-dependent and ligand-independent protection in the Src SH3 domain
-
15576569
-
Hydrogen exchange and ligand binding: Ligand-dependent and ligand-independent protection in the Src SH3 domain. D Wildes S Marqusee, Protein Sci 2005 14 81 88 15576569
-
(2005)
Protein Sci
, vol.14
, pp. 81-88
-
-
Wildes, D.1
Marqusee, S.2
-
25
-
-
0028922586
-
Ligplot - A Program to Generate Schematic Diagrams of Protein Ligand Interactions
-
7630882
-
Ligplot - a Program to Generate Schematic Diagrams of Protein Ligand Interactions. AC Wallace RA Laskowski JM Thornton, Protein Eng 1995 8 127 134 7630882
-
(1995)
Protein Eng
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
26
-
-
0033778163
-
Comparison of binding energies of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization
-
11106171
-
Comparison of binding energies of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization. DA Henriques JE Ladbury RM Jackson, Protein Sci 2000 9 1975 1985 11106171
-
(2000)
Protein Sci
, vol.9
, pp. 1975-1985
-
-
Henriques, D.A.1
Ladbury, J.E.2
Jackson, R.M.3
-
27
-
-
0036836538
-
Structural parameterization of the binding enthalpy of small ligands
-
Structural parameterization of the binding enthalpy of small ligands. I Luque E Freire, Proteins-Struc Func Gen 2002 49 181 190
-
(2002)
Proteins-Struc Func Gen
, vol.49
, pp. 181-190
-
-
Luque, I.1
Freire, E.2
-
28
-
-
23444450909
-
Coupling of Local Folding to Site-Specific Binding of Proteins to DNA
-
8303294
-
Coupling of Local Folding to Site-Specific Binding of Proteins to DNA. RS Spolar MT Record, Science 1994 263 777 784 8303294
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, M.T.2
-
29
-
-
0032311808
-
Prediction of binding energetics from structure using empirical parameterization
-
Prediction of binding energetics from structure using empirical parameterization. BM Baker KP Murphy, Energetics of Biological Macromolecules, Pt B 1998 295 294 315
-
(1998)
Energetics of Biological Macromolecules, Pt B
, vol.295
, pp. 294-315
-
-
Baker, B.M.1
Murphy, K.P.2
-
30
-
-
0028014642
-
Bound Water-Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association
-
8302837
-
Bound Water-Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association. TN Bhat GA Bentley G Boulot MI Greene D Tello W Dallacqua H Souchon FP Schwarz RA Mariuzza RJ Poljak, Proc Natl Acad Sci USA 1994 91 1089 1093 8302837
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 1089-1093
-
-
Bhat, T.N.1
Bentley, G.A.2
Boulot, G.3
Greene, M.I.4
Tello, D.5
Dallacqua, W.6
Souchon, H.7
Schwarz, F.P.8
Mariuzza, R.A.9
Poljak, R.J.10
-
31
-
-
34247336900
-
Water molecules in biomolecular interfaces
-
Water molecules in biomolecular interfaces. JE Ladbury, Biophys J 1998 74 A145 A145
-
(1998)
Biophys J
, vol.74
-
-
Ladbury, J.E.1
-
32
-
-
1042298819
-
Heat capacity effects of water molecules and ions at a protein-DNA interface
-
15095863
-
Heat capacity effects of water molecules and ions at a protein-DNA interface. S Bergqvist MA Williams R O'Brien JE Ladbury, J Mol Biol 2004 336 829 842 15095863
-
(2004)
J Mol Biol
, vol.336
, pp. 829-842
-
-
Bergqvist, S.1
Williams, M.A.2
O'Brien, R.3
Ladbury, J.E.4
-
33
-
-
33745066058
-
The role of water in computational and experimental derivation of binding thermodynamics in SH2 domains
-
The role of water in computational and experimental derivation of binding thermodynamics in SH2 domains. S Geroult S Virdee G Waksman, Chem Biol & Drug Design 2006 67 38 45
-
(2006)
Chem Biol & Drug Design
, vol.67
, pp. 38-45
-
-
Geroult, S.1
Virdee, S.2
Waksman, G.3
-
34
-
-
0037063354
-
The temperature dependence of the hydrogen exchange in the SH3 domain of alpha-spectrin
-
12220639
-
The temperature dependence of the hydrogen exchange in the SH3 domain of alpha-spectrin. M Sadqi S Casares O Lopez-Mayorga F Conejero-Lara, FEBS Lett 2002 527 86 90 12220639
-
(2002)
FEBS Lett
, vol.527
, pp. 86-90
-
-
Sadqi, M.1
Casares, S.2
Lopez-Mayorga, O.3
Conejero-Lara, F.4
-
36
-
-
0023684064
-
A general method of in vitro preparation and specific mutagenesis of DNA fragments: Study of protein and DNA interactions
-
3045756
-
A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. R Higuchi B Krummel RK Saiki, Nucleic Acids Res 1988 16 7351 7367 3045756
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 7351-7367
-
-
Higuchi, R.1
Krummel, B.2
Saiki, R.K.3
-
37
-
-
0024448151
-
Calculation of protein extinction coefficients from amino-acid sequence data
-
2610349
-
Calculation of protein extinction coefficients from amino-acid sequence data. SC Gill PH Von Hippel, Anal Biochem 1989 182 319 326 2610349
-
(1989)
Anal Biochem
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
39
-
-
34249765651
-
NMR View - A computer-program for the visualization and analysis of NMR data
-
NMR View - a computer-program for the visualization and analysis of NMR data. BA Johnson RA Blevins, J Biomol NMR 1994 4 603 614
-
(1994)
J Biomol NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
41
-
-
0031160370
-
1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: Comparison of unrefined and refined structure sets with the crystal structure
-
9255941
-
1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: comparison of unrefined and refined structure sets with the crystal structure. FJ Blanco AR Ortiz L Serrano, J Biomol NMR 1997 9 347 357 9255941
-
(1997)
J Biomol NMR
, vol.9
, pp. 347-357
-
-
Blanco, F.J.1
Ortiz, A.R.2
Serrano, L.3
-
42
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
12051947
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. T Herrmann P Guntert K Wüthrich, J Mol Biol 2002 319 209 227 12051947
-
(2002)
J Mol Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Guntert, P.2
Wüthrich, K.3
-
43
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
9367762
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA. P Guntert C Mumenthaler K Wüthrich, J Mol Biol 1997 273 283 298 9367762
-
(1997)
J Mol Biol
, vol.273
, pp. 283-298
-
-
Guntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
44
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Crystallography & NMR system: A new software suite for macromolecular structure determination. AT Brunger PD Adams GM Clore WL DeLano P Gros RW Grosse-Kunstleve JS Jiang J Kuszewski M Nilges NS Pannu RJ Read LM Rice T Simonson GL Warren, Acta Crystallogr Sect D-Biol Crystallogr 1998 54 905 921
-
(1998)
Acta Crystallogr Sect D-Biol Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
49
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
8234246
-
Primary structure effects on peptide group hydrogen exchange. Y Bai JS Milne L Mayne SW Englander, Proteins 1993 17 75 86 8234246
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
51
-
-
0003742069
-
-
Department of Biochemistry and Molecular Biology, University College, London
-
NACCESS, Computer Program. SJ Hubbard JM Thornton, Department of Biochemistry and Molecular Biology, University College, London 1993
-
(1993)
NACCESS, Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
52
-
-
0015222647
-
Interpretation of protein structures - Estimation of static accessibility
-
5551392
-
Interpretation of protein structures - estimation of static accessibility. B Lee FM Richards, J Mol Biol 1971 55 379 5551392
-
(1971)
J Mol Biol
, vol.55
, pp. 379
-
-
Lee, B.1
Richards, F.M.2
-
53
-
-
12344276782
-
The effect of water displacement on binding thermodynamics: Concanavalin a
-
16851059
-
The effect of water displacement on binding thermodynamics: Concanavalin A. Z Li T Lazaridis, J Phys Chem B 2005 109 662 670 16851059
-
(2005)
J Phys Chem B
, vol.109
, pp. 662-670
-
-
Li, Z.1
Lazaridis, T.2
|