Impact of the loss of AtMSH2 on double-strand break-induced recombination between highly diverged homeologous sequences in Arabidopsis thaliana germinal tissues

Plant Molecular Biology

Volumn 63, Issue 6, 2007, Pages 833-846

  Lafleuriel, Jacqueline ^a   Degroote, Fabienne ^a   Depeiges, Annie ^a   Picard, Georges ^a  

^a CNRS   (France)

Author keywords

Arabidopsis thaliana; Homeologous sequences; Mismatch repair; MSH2; Recombination; Single strand annealing

Indexed keywords

ARABIDOPSIS THALIANA; HOMEOLOGOUS SEQUENCES; MISMATCH REPAIRS; SINGLE STRAND ANNEALING (SSA);

CELLS; GENES; SUBSTRATES; TISSUE;

GENETIC ENGINEERING;

AMINOBUTYRIC ACID DERIVATIVE; ARABIDOPSIS PROTEIN; BACTERIAL DNA; ENDODEOXYRIBONUCLEASE SCEI; HERBICIDE; MSH2 PROTEIN, ARABIDOPSIS; PHOSPHINOTHRICIN; PLANT DNA; PROTEIN MSH2; T DNA; T-DNA; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE; UNCLASSIFIED DRUG;

ALLELE; ARABIDOPSIS; ARTICLE; BASE MISPAIRING; BIOLOGICAL MODEL; CHEMISTRY; CHROMOSOME SEGREGATION; CROSS BREEDING; DNA REPAIR; DNA SEQUENCE; DOUBLE STRANDED DNA BREAK; GENE VECTOR; GENETIC RECOMBINATION; GENETICS; GENOTYPE; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; SEQUENCE HOMOLOGY; TRANSGENIC PLANT;

ALLELES; AMINOBUTYRIC ACIDS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE PAIR MISMATCH; BASE SEQUENCE; CHROMOSOME SEGREGATION; CROSSES, GENETIC; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA BREAKS, DOUBLE-STRANDED; DNA REPAIR; DNA, BACTERIAL; DNA, PLANT; GENETIC VECTORS; GENOTYPE; HERBICIDES; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTS HOMOLOG 2 PROTEIN; PLANTS, GENETICALLY MODIFIED; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

CELLS; GENES; GENETIC ENGINEERING; PLANT TISSUES; SUBSTRATES;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 33947178865     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-006-9128-5     Document Type: Article

References (46)

1. Aljabani SM, Martinez I (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res 25:4692-4693
2. Bechtold N, Pelletier G (1998) In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Methods Mol Biol 82:259-266
3. Becker D (1990) Binary vectors which allow the exchange of plant selectablemarkers and reporter genes. Nucleic AcidsRes 18:203
4. Becker D, Kemper E, Schell J, Masterson R (1992) New plant binary vectors with selectable markers located proximal to the left T-DNA border. Plant Mol Biol 20:1195-1197
5. Chen W, Jinks-Robertson S (1999) The role of the mismatch repair machinery in regulating mitotic and meiotic recombination between diverged sequences in yeast. Genetics 151:1299-1313
6. Chiurazzi M, Animesh R, Viret JF, Perea R, Wang XH, Lloyd AM, Signer E (1996) Enhancement of somatic intrachromosomal homologous recombination in Arabidopsis by the HO endonuclease. Plant Cell 8:2057-2066
7. Coïc E, Gluck L, Fabre F (2000) Evidence for short-patch mismatch repair in Saccharomyces cerevisiae. EMBO J 19:3408-3417
8. Datta A, Adjiri A, New L, Crouse GF, Jinks-Robertson S (1996) Mitotic crossovers between diverged sequences are regulated by mismatch repair proteins in Saccharomyces cerevisiae. Mol Cell Biol 16:1085-1093
9. Datta A, Hendrix M, Lipsitch M, Jinks-Robertson S (1997) Dual roles for DNA sequence identity and the mismatch repair system in the regulation of mitotic crossing-over in yeast. Proc Natl Acad Sci USA 94:9757-9762
10. Depeiges A, Degroote F, Espagnol MC, Picard G (2006) Translation initiation by non-AUG codons in Arabidopsis thaliana transgenic plants. Plant Cell Rep 25:55-61
11. Dubest S, Gallego ME, White CI (2002) Role of the AtRad1p endonuclease in homologous recombination in plants. EMBO Rep 3:1049-4054
12. Dubest S, Gallego ME, White CI (2004) Roles of the AtErcc1 protein in recombination. Plant J 39:334-342
13. Elliot B, Jasin M (2001) Repair of double-strand breaks by homologous recombination in mismatch repair-defective mammalian cells. Mol Cell Biol 21:2671-2682
14. Emmanuel E, Yehuda E, Melamed-Bessudo C, Avivi-Ragolsky N, Levy A (2006) The role of AtMSH2 in homologous recombination in Arabidopsis thaliana. EMBO Rep 7:100-104
15. Fleck O, Lehmann E, Schar P, Kohli L (1999) Involvement of nucleotide-excision repair in MSH2 PMS1-independent mismatch repair. Nat Genet 21:314-317
16. Goldfarb T, Alani E, (2005) Distinct roles for the Saccharomyces cerevisiae mismatch repair proteins in heteroduplex rejection, mismatch repair and non homologous tail removal. Genetics 169:563-574
17. Gorbunova V, Levy A (1999) How plants make ends meet: DNA double-strands break repair. Trends Plant Sci 4:263-269
18. Harfe BD, Jinks-Robertson S (2000) DNA mismatch repair and genetic instability. Annu Rev Genet 34:359-399
19. Hoffman PD, Leonard JM, Lindberg GE, Bollmann SR, Hays JB (2004) Rapid accumulation of mutations during seedto-seed propagation of mismatch-repair- defective Arabidopsis. Genes Dev. 18:2676-2685
20. Leonard JM, Bollmann SR, Hays JB (2003) Reduction of stability of Arabidopsis genomic and transgenic DNA-repeat sequences (microsatellites) by inactivation of AtMSH2 mismatch-repair function. Plant Physiol 133:328-338
21. Li L, Santerre-Ayotte S, Boivin EB, Jean M, Belzile F (2004) A novel reporter for intrachromosomal homeologous recombination in Arabidopsis thaliana. Plant J 40:1007-1015
22. Li L, Jean M, Belzile F (2006) The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis. Plant J 45:908-916
23. Muheim-Lenz R, Buterin T, Marra G, Naegeli H (2004) Short-patch correction of C-C mismatches in human cells. Nucleic Acids Res 32:6696-6705
24. Modrich P, Lahue R (1996) Mismatch repair in replication fidelity, genetic recombination and cancer biology. Annu Rev Biochem 65:101-133
25. Nicholson A, Hendrix M, Jinks-Robertson S, Crouse GH (2000) Regulation of mitotic homeologous recombination in yeast: Functions of mismatch repair and nucleotide excision repair genes. Genetics 154:133-146
26. Oda S, Humbert O, Fiumicino S, Bignami M, Karran P (2000) Efficient repair of A/C mismatches in mouse cells deficient in long patch mismatch repair. EMBO J 19:1711-1718
27. Opperman R, Emmanuel E, Levy AA (2004) The effect of sequence divergence on recombination between direct repeats in Arabidopsis. Genetics 168:2207-2215
28. Orel N, Kyryk A, Puchta H (2003) Different pathways of homologous recombination are used for the repair of double-stand breaks within tandemly arranged sequences in the plant genome. Plant J 35:604-612
29. Pâques F, Haber JE (1997) Two pathways for removal of nonhomologous DNA ends during double-strand break repair in Saccharomyces cerevisiae. Mol Cell Biol 17:6765-6771
30. Puchta H (1998) Repair of genomic double-strand breaks in somatic plant cells by one-sided i nvasion of homologous sequences. Plant J 13:331-339
31. Puchta H (2005) The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution. J Exp Bot 56:1-14
32. Puchta H, Dujon B, Hohn B (1993) Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease. Nucleic Acids Res 21:5034-5040
33. Puchta H, Dujon B, Hohn B (1996) Two different but related mechanisms are used in plants for the repair of double-strand breaks by homologous recombination. Genetics 93:5055-5060
34. Ray A, Langer M (2002) Homologous recombination: ends as the means. Trends Plant Sci 7:435-440
35. Rayssiguier C, Thaler DS, Radman M (1989) The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature 342:396-401
36. Schoffield MJ, Hsieh P (2003) DNA mismatch repair: molecular mechanisms and biological function. Annu Rev Microbiol 57:579-608
37. Siebert R, Puchta H (2002) Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome. Plant Cell 14:1121-1131
38. Stambuk S, Radman M (1998) Mechanism and control of interspecies recombination in Escherichia coli. I. Mismatch repair, methylation, recombination and replication functions. Genetics 150:533-542
39. Sugawara N, Pâques F, Colaiacovo M, Haber J (1997) Role of Saccharomyces cerevisiae Msh2 and Msh3 repair proteins in double-strand break-induced recombination. Proc Natl Acad Sci USA 94:9214-9219
40. Sugawara N, Goldfarb T, Studamire B, Alani E, Haber J (2004) Heteroduplex rejection during single-strand annealing requires Sgs1 helicase and mismatch repair proteins Msh2 and Msh6 but not Pms1. Proc Natl Acad Sci USA 101:9315-9320
41. Thierry A, Fairhead C, Dujon B (1990) The complete sequence of the 8.2 kb segment left of MAT on chromosome III reveals five ORFs, including a gene for yeast ribokinase. Yeast 6:521-534
42. Trouiller B, Schaefer DG, Charlot F, Nogué F (2006) MSH2 is essential for the preservation of genome integrity and prevents homeologous recombination in the moss physcomitella patens. Nucleic Acids Res 34:232-242
43. White J, Chang SHP, Bibb MJ, Bibb MJ (1990) A cassette containing the bar gene of Streptomyces hygroscopicus: a selectable marker for plant transformation. Nucleic Acids Res 18:1062
44. Westmoreland J, Porter G, Radman M, Resnick MA (1997) Highly mismatched molecules resembling recombination intermediates efficiently transform mismatch repair profi-cient Escherichia coli. Genetics 145:29-38
45. Wohlleben W, Arnold W, Broer I, Hilleman D, Strauch E, Pühler A (1988) Nucleotide sequence of the phosphinithricin N-acetyltransferase gene from Streptomyces viridochromogenes Tü 494 and its expression in Nicotiana tabacum. Gene 70:25-37
46. Zahrt TC, Maloy S (1997) Barriers to recombination between closely related bacteria: MutS and RecBCD inhibit recombination between Salmonella typhimurium and Salmonella typhi. Proc Natl Acad Sci USA 94:9786-9791