Mitotic crossovers between diverged sequences are regulated by mismatch repair proteins in Saccharomyces cerevisiae

Molecular and Cellular Biology

Volumn 16, Issue 3, 1996, Pages 1085-1093

  Datta, Abhijit ^a   Adjiri, Adouda ^a   New, Liguo ^a,b   Crouse, Gray F ^a   Jinks Robertson, Sue ^a  

^a EMORY UNIVERSITY   (United States)

^b Advanced Tissue Sciences Liquidating Trust   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BASE PAIRING; DNA REPAIR; DNA SEQUENCE; GENETIC RECOMBINATION; MITOSIS; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

EUKARYOTA; PROKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0030051527     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.3.1085     Document Type: Article

References (75)

1. Ahn, B.-Y., K. J. Dornfeld, T. J. Fagrelius, and D. M. Livingston. 1988 Effect of limited homology on gene conversion in a Saccharomyces cerevisiae plasmid recombination system. Mol. Cell Biol. 8:2442-2448
2. Alani, E., L. Cao, and N. Kleckner. 1987. A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains. Genetics 116:541-545.
3. Alani, E., N.-W. Chi, and R. Kolodner. 1995 The Saccharomyces cerevisiae Msh2 protein specifically binds to duplex oligonucleotides containing mismatched DNA base pairs and insertions. Genes Dev. 9:234-247.
4. Alani, E., R. A. G. Reenan, and R. D. Kolodner. 1994. Interaction between mismatch repair and genetic recombination in Saccharomyces cerevisiae. Genetics 137:19-39.
5. Hailis, A. M., and R. Rothstein. 1990. A defect in mismatch repair in Saccharomyces cerevisiae stimulates ectopic recombination between homeologous genes by an excision repair dependent process. Genetics 126:535-547.
6. Baltimore, D. 1981 Gene conversion: some implications for immunoglobulin genes. Cell 24:592-594.
7. Boeke, J. D., J. Trueheart, G. Natsoulis, and G. R. Fink. 1987. 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154:164-175.
8. Bronner, C. E., S. M. Baker, P. T. Morrison, G. Warren, L. G. Smith, M. K. Lescoe, M. Kane, C. Earabino, J. Lipford, A. Lindblom, P. Tannergard, R. J. Bollag, A. R. Godwin, D. C. Ward, M. Nordenskjold, R. Fishel, R. Kolodner, and R. M. Liskay. 1994 Mutation in the DNA mismatch repair gene homologue hMLH1 is associated with hereditary non-polyposis colon cancer Nature (London) 368:258-261.
9. Datta, A., and S. Jinks-Robertson. Unpublished data.
10. Deng, C., and M. R. Capecchi. 1992 Reexamination of gene targeting frequency as a function of the extent of homology between the targeting vector and the target locus Mol. Cell. Biol. 12:3365-3371
11. Devereux, J., P. Haeberli, and O. Smithies. 1984 A comprehensive set of sequence analysis programs for the VAX Nucleic Acids Res. 12:387-395.
12. Drummond, J. T., G.-M. Li, M. J. Longley, and P. Modrich. 1995. Isolation of an hMSH2-p160 heterodimer that restores DNA mismatch repair to tumor cells. Science 268:1909-1912.
13. Edelman, G. M., and J. A. Gally. 1970. Arrangement and evolution of eukaryotic genes, p. 962-972. In F. O. Schmitt (ed.), The neurosciences: second study program. Rockefeller University Press, New York.
14. Feinstein, S. I., and K. B. Low. 1986. Hyper-recombining recipient strains in bacterial conjugation. Genetics 113:13-33.
15. Fishel, R., M. K. Lescoe, M. R. S. Rao, N. G. Copeland, N. A. Jenkins, J. Garber, M. Kane, and R. Kolodner. 1993. The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer. Cell 75:1027-1038
16. Harris, S., K. S. Rudnicki, and J. E. Haber. 1993. Gene conversions and crossing over during homologous and homeologous ectopic recombination in Saccharomyces cerevisiae. Genetics 135:5-16.
17. Holliday, R. 1964. A mechanism for gene conversion in fungi. Genet. Res. 5:282-304.
18. Hollingsworth, N. M., L. Ponte, and C. Halsey. 1995 MSH5, a novel MutS homolog, facilitates meiotic reciprocal recombination between homologs in Saccharomyces cerevisiae but not mismatch repair. Genes Dev. 9:1728-1739.
19. Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163-168.
20. Jinks-Robertson, S., M. Michelitch, and S. Ramcharan. 1993. Substrate length requirements for efficient mitotic recombination in Saccharomyces cerevisiae Mol. Cell. Biol. 13:3937-3950.
21. Klein, H. L. 1988. Recombination between repeated yeast genes, p. 385-421. In K. B. Low (ed.), The recombination of genetic material. Academic Press, San Diego, Calif
22. Kramer, B., W. Kramer, M. S. Williamson, and S. Fogel. 1989. Heteroduplex DNA correction in Saccharomyces cerevisiae is mismatch specific and requires functional PMS genes. Mol. Cell. Biol. 9:4432-4440.
23. Kramer, W., B. Kramer, M. S. Williamson, and S. Fogel. 1989. Cloning and nucleotide sequence of DNA mismatch repair gene PMS1 from Saccharomyces cerevisiae: homology of PMS1 to procaryotic MutL and HexB. J Bacteriol. 171:5339-5346.
24. Larionov, V., N. Kouprina, M. Eldarov, E. Perkins, G. Porter, and M. A. Resnick. 1994. Transformation-associated recombination between diverged and homologous DNA repeats is induced by strand breaks. Yeast 10:93-104
25. Lea, D. E., and C. A. Coulson. 1949. The distribution of the numbers of mutants in bacterial populations. J. Genet. 49:264-284.
26. Leach, F. S., N. C. Nicolaides, N. Papadopoulos, B. Liu, J. Jen, R. Parsons, P. Peltomaki, P. Sistoene, L. A. Aaltonen, M. Nystrom-Lahti, X.-Y. Guan, J. Zhang, P. S. Meltzer, J.-W. Yu, F.-T. Kao, D. J. Chen, K. M. Cerosaletti, R. E. K. Fournier, S. Todd, T. Lewis, R. J. Leach, S. L. Naylor, J. Weissenbach, J.-P. Mecklin, H. Jarvinen, G. M. Petersen, S. R. Hamilton, J. Green, J. Jass, P. Watson, H. T. Lynch, J. M. Trent, A. de la Chapelle, K. W. Kinzler, and B. Vogelstein. 1993. Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer. Cell 17:1215-1225
27. Lichten, M., and J. E. Haber. 1989 Position effects in ectopic and allelic mitotic recombination in Saccharomyces cerevisiae Genetics 123:261-268
28. Liskay, R. M., A. Letsou, and J. L. Stachelek. 1987. Homology requirement for efficient gene conversion between duplicated chromosomal sequences in mammalian cells Genetics 115:161-167.
29. Maizels, N. 1989. Might gene conversion be the mechanism of somatic hypermutation of mammalian immunoglobulin genes? Trends Genet. 5:4-8.
30. Matic, I., C. Rayssiguier, and M. Radman. 1995. Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species. Cell 80:507-515
31. Meselson, M. S., and C. M. Radding. 1975. A general model for genetic recombination. Proc. Natl. Acad. Sci USA 72:358-361.
32. Mezard, C., and A. Nicolas. 1994. Homologous, homeologous, and illegitimate repair of double-strand breaks during transformation of a wild-type strain and a rad52 mutant strain of Saccharomyces cerevisiae. Mol. Cell. Biol 14:1278-1292.
33. Mezard, C., D. Pompon, and A. Nicolas. 1992. Recombination between similar but not identical DNA sequences during yeast transformation occurs within short stretches of identity. Cell 70:659-670.
34. Miret, J. J., M. G. Milla, and R. S. Lahue. 1993. Characterization of a DNA mismatch-binding activity m yeast extracts. J. Biol. Chem. 268:3507-3513.
35. Modrich, P. 1991. Mechanisms and biological effects of mismatch repair Annu. Rev. Genet. 25:229-253.
36. Monteiro, M. J., and D. W. Cleveland. 1988. Sequence of the chicken cβ2 tubulin: analysis of a complete set of vertebrate β-tubulin isotypes. J Mol. Biol. 199:439-446.
37. New, L., K. Liu, and G. F. Crouse. 1993. The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. Mol Gen. Genet. 239:97-108.
38. Palombo, F., P. Gallinari, I. Iaccarino, T. Lettieri, M. Hughes, A. D'Arrigo, O. Truong, J. J. Hsuan, and J. Jiricny. 1995. GTBP, 160 kd protein essential for mismatch-binding activity in human cells. Science 268:1912-1914.
39. Papadopoulos, N., N. C. Nicolaides, B. Liu, R. Parsons, C. Lengauer, F. Palombo, A. D'Arrigo, S. Markowitz, J. K. V. Willson, K. W. Kinzler, J. Jiricny, and B. Vogelstein. 1995. Mutations of GTBP in genetically unstable cells. Science 268:1915-1916
40. Petes, T. D., and C. W. Hill. 1988. Recombination between repeated genes in microorganisms. Annu. Rev. Genet. 22:147-168.
41. Petes, T. D., R. E. Malone, and L. S. Symington. 1991. Recombination in yeast, p. 407-521. In J. R. Broach, J. R. Pringle, and E. W. Jones (ed.), The molecular biology of the yeast Saccharomyces: genome dynamics, protein synthesis and energetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
42. Petit, M.-A., J. Dimpfl, M. Radman, and H. Echols. 1991 Control of large chromosomal duplications in Eschenchia coli by the mismatch repair system Genetics 129:327-332.
43. Priebe, S. D., J. Westmoreland, T. Nilsson-Tillgren, and M. A. Resnick. 1994. Induction of recombination between homologous and diverged DNAs by double-strand gaps and breaks and role of mismatch repair. Mol. Cell Biol 14:4802-4814.
44. Prolla, T. A., D.-M. Christie, and R. M. Liskay. 1994. Dual requirement in yeast DNA mismatch repair for MLH1 and PMS1, two homologs of the bacterial mutL gene. Mol. Cell. Biol. 14:407-415
45. Prolla, T. A., Q. Pang, E. Alani, R. D. Kolodner, and R. M. Liskay. 1994. MLH1, PMS1, and MSH2 interactions during the initiation of DNA mismatch repair in yeast. Science 265:1091-1093.
46. Radman, M. 1988. Mismatch repair and genetic recombination, p. 169-192 In R. Kucherlapati and G. R. Smith (ed.), Genetic recombination American Society for Microbiology, Washington, D.C
47. Radman, M. 1991. Avoidance of inter-repeat recombination by sequence divergence and a mechanism of neutral evolution. Biochimie 73:357-361
48. Rattray, A. J., and L. S. Symington. 1994. Use of a chromosomal inverted repeat to demonstrate that the RAD51 and RAD52 genes of Saccharomyces cerevisiae have different roles in mitotic recombination. Genetics 138:587-595.
49. Rayssiguier, C., D. S. Thaler, and M. Radman. 1989. The barrier to recombination between Eschenchia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature (London) 342:396-401.
50. Reenan, R. A. G., and R. D. Kolodner. 1992 Isolation and characterization of two Saccharomyces cerevisiae genes encoding homologs of the bacterial HexA and MutS mismatch repair proteins. Genetics 132:963-973
51. Reenan, R. A. G., and R. D. Kolodner. 1992. Characterization of insertion mutations in the Saccharomyces cerevisiae MSH1 and MSH2 genes: evidence for separate mitochrondrial and nuclear functions. Genetics 132:975-985
52. Resnick, M. A., Z. Zgaga, P. Hieter, J. Westmoreland, S. Fogel, and T. Nilsson-Tillgren. 1992. Recombinational repair of diverged DNAs: a study of homeologous chromosomes and mammalian YACs in yeast. Mol. Gen. Genet. 234:65-73.
53. Ross-Macdonald, P., and G. S. Roeder. 1994. Mutation of a meiosis-specific MutS homolog decreases crossing over but not mismatch correction. Cell 79:1069-1080
54. Rothstein, R. 1991. Targeting, disruption, replacement, and allele rescue integrative DNA transformation in yeast. Methods Enzymol. 194:281-301
55. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
56. Sancar, A., and J. E. Hearst. 1993. Molecular matchmakers. Science 259: 1415-1420.
57. Selva, E. M., L. New, G. F. Crouse, and R. S. Lahue. 1995. Mismatch correction acts as a barrier to homeologous recombination in Saccharomyces cerevisiae. Genetics 139:1175-1188.
58. Shen, M. R., and P. L. Deininger. 1992 An in vivo assay for measuring the recombination potential between DNA sequences in mammalian cells. Anal Biochem 205:83-89.
59. Shen, P., and H. V. Huang. 1986. Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics 112:441-457
60. Shen, P., and H. V. Huang. 1989. Effect of base pair mismatches on recombination via the RecBCD pathway. Mol Gen. Genet. 218:358-360.
61. Sherman, F. 1991 Getting started with yeast. Methods Enzymol. 194:3-20.
62. Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
63. Strand, M., M. C. Earley, G. F. Crouse, and T. D. Petes. 1995. Mutations in the MSH3 gene preferentially lead to deletions within tracts of simple repetitive DNA in Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA 92: 10418-10421.
64. Strand, M., T. A. Prolla, R. M. Liskay, and T. D. Petes. 1993 Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair Nature (London) 365:274-276
65. Struhl, K. 1984. Genetic properties and chromatin structure of the yeast gal regulatory element: an enhancer-like sequence. Proc Natl. Acad. Sci. USA 81:7865-7869.
66. Sugawara, N., E. L. Ivanov, J. Fishman-Lobell, B. L. Ray, X. Wu, and J. E. Haber. 1995. DNA structure-dependent requirements for yeast RAD genes in gene conversion. Nature (London) 373:84-86.
67. Sullivan, K. F., J. T. Y. Lau, and D. W. Cleveland. 1985. Apparent gene conversion between β-tubulin genes yields multiple regulatory pathways for a single β-tubulin polypeptide isotype. Mol. Cell. Biol. 5:2454-2465.
68. Szostak, J. W., T. L. Orr-Weaver, R. J. Rothstein, and F. W. Stahl. 1983 The double-strand-break repair model for recombination. Cell 33:25-35.
69. Waldman, A. S., and R. M. Liskay. 1987. Differential effects of base-pair mismatch on intrachromosomal versus extrachromosomal recombination in mouse cells Proc. Natl. Acad. Sci. USA 84:5340-5344.
70. Waldman, A. S., and R. M. Liskay. 1988. Dependence of intrachromosomal recombination in mammalian cells on uninterrupted homology. Mol. Cell Biol. 8:5350-5357.
71. Williamson, M. S., J. C. Game, and S. Fogel. 1985. Meiotic gene conversion mutants in Saccharomyces cerevisiae. I. Isolation and characterization of pmsI-1 and pmsI-2. Genetics 110:609-646.
72. Woolford, J. L., Jr. 1989. Nuclear pre-mRNA splicing in yeast. Yeast 5:439-457.
73. Worth, L. Jr., S. Clark, M. Radman, and P. Modrich. 1994. Mismatch repair proteins MutS and MutL inhibit RecA-catalyzed strand transfer between diverged DNAs. Proc. Natl. Acad. Sci. USA 91:3238-3241.
74. Yoshimatsu, T., and F. Nagawa. 1989. Control of gene expression by artificial introns in Saccharomyces cerevisiae. Science 244:1346-1348.
75. Zahart, T. C., G. C. Mora, and S. Maloy. 1994. Inactivation of mismatch repair overcomes the barrier to transduction between Salmonella typhimurium and Salmonella typhi. J. Bacteriol. 176:1527-1529.