Enhancement of somatic intrachromosomal homologous recombination in Arabidopsis by the HO endonuclease

Plant Cell

Volumn 8, Issue 11, 1996, Pages 2057-2066

  Chiurazzi, Maurizio ^a,b   Ray, Animesh ^a,c   Viret, Jean Frederic ^a   Perera, Ranjan ^a,e   Wang, Xiao Hui ^a   Lloyd, Alan M ^d,f   Signer, Ethan R ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b INSTITUTE OF GENETICS AND BIOPHYSICS ADRIANO BUZZATI TRAVERSO   (Italy)

^c UNIVERSITY OF ROCHESTER   (United States)

^d STANFORD UNIVERSITY   (United States)

^e Department of Molecular Biology   (Sri Lanka)

^f UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0030292901     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.8.11.2057     Document Type: Article

References (66)

1. Assaad, F.F., and Signer, E.R. (1992). Somatic and germinal recombination of a direct repeat in Arabidopsis. Genetics 132, 553-566.
2. Assaad, F.F., Tucker, K.L., and Signer, E.R. (1993). Epigenetic repeat-induced gene silencing (RIGS) in Arabidopsis. Plant Mol. Biol. 22, 1067-1085.
3. Athma, P., and Peterson, T. (1991). Ac induces homologous recombination at the maize P locus. Genetics 128, 163-173
4. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K., eds (1992) Short Protocols in Molecular Biology. (New York: John Wiley and Sons).
5. Cao, L., Alani, E., and Kleckner, N. (1990). A pathway for generation and processing of double-strand breaks during meiotic recombination in Saccharomyces cerevisiae. Cell 61, 1089-1101
6. Choulika, A., Perrin, A., Dujon, B., and Nicolas, J.F. (1995). Induction of homologous recombination in mammalian chromosomes by using the l-Scel system of Saccharomyces cerevisiae. Mol. Cell. Biol. 15, 1968-1973.
7. Das, O.P., Levi-minzi, S., Koury, M., Benner, M., and Messing, J. (1990). A somatic gene rearrangement contributing to genetic diversity in maize. Proc. Natl. Acad Sci. USA 87, 7809-7813.
8. Davies, C., Howard, D., Tam, G., and Wong, N. (1994). Isolation of Arabidopsis thaliana mutants hypersensitive to gamma radiation. Mol. Gen. Genet. 243, 660-665.
9. Dellaporta, S.L., Wood, J., and Hicks, J.B. (1983). A plant DNA minipreparation: Version II Plant Mol. Biol. Rep. 4, 19-21.
10. de Massy, B., Rocco, V., and Nicolas, A. (1995). The nucleotide mapping of DNA double-strand breaks at the CYS3 initiation site of meiotic recombination in Saccharomyces cerevisiae. EMBO J 14, 4589-4598.
11. Fishman-Lobell, J., Rudin, N., and Haber, J.E. (1992) Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated Mol. Cell Biol. 12, 1292-1303
12. Flavell, R.B. (1994). Inactivation of gene expression m plants as a consequence of specific sequence duplication. Proc Natl Acad Sci USA 91, 3490-3496.
13. Gal, S., Pisan, B., Hohn, T., Grimsley, N., and Hohn, B. (1991). Genomic homologous recombination in planta. EMBO J. 10, 1571-1578.
14. Gloor, G.B., Nassif, N.A., Johnson-Schlitz, D.M., Preston, C.R., and Engels, W.R. (1991). Targeted gene replacement in Drosophila via P element-induced gap repair Science 253, 1110-1117.
15. Guilley, H., Dudley, R.K., Jonard, G., Balazs, E., and Richards, K.E. (1982). Transcription of cauliflower mosaic virus DNA: Detection of promoter sequences, and characterization of transcripts. Cell 30, 763-773.
16. Haber, J.E. (1995). In vivo biochemistry: Physical monitoring of recombination induced by site-specific endonucleases. Bioessays 17, 609-620.
17. Haber, J.E., Ray, B.L., Kolb, J.M., and White, C.I. (1993). Rapid kinetics of mismatch repair of heteroduplex DNA that is formed during recombination in yeast Proc. Natl. Acad. Sci. USA 90, 3363-3367.
18. Hastings, P.J., McGill, C., Shafer, B., and Strathern, J.N. (1993). Ends-in vs. ends-out recombination in yeast. Genetics 135, 973-980.
19. Herskowitz, I., and Jensen, R.I. (1991). Putting the HO gene to work: Practical uses for mating type switching. Methods Enzymol. 194, 132-146.
20. Jackson, J.A., and Fink, G.R. (1981) Gene conversion between duplicated genetic elements in yeast. Nature 292, 306-311.
21. Jackson, J.A., and Fink, G.R. (1985). Meiotic recombination between duplicated genetic elements in Saccharomyces cerevisiae. Genetics 109, 303-332.
22. Jefferson, R.A. (1987). Assaying chimeric genes in plants: The GUS gene fusion system. Plant Mol. Biol. Rep. 5, 387-405.
23. Jefferson, R.A., Kavanagh, T.A., and Bevan, M.W. (1987) GUS fusions: β-Glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6, 3901-3907.
24. Klein, H.L. (1984) Lack of association of intrachromosomal gene conversion and reciprocal exchange Nature 310, 748-753
25. Kobayashi, I. (1992). Mechanisms for gene conversion and homologous recombination: The double-strand break repair and the successive half crossing over model. Adv. Biophys 28, 81-133.
26. Kolodkin, A.L., Klar, A.J.S., and Stahl, F.W. (1986). Double-strand breaks can initiate meiotic recombination in S. cerevisiae Cell 46, 733-740.
27. Kostriken, R., Strathern, J.N., Klar, A.J., Hicks, J.B., and Heffron, F. (1983). A site-specific endonuclease essential for mating-type switching in Saccharomyces cerevisiae. Cell 35, 167-174.
28. Lazo, G.R., Stein, P.A., and Ludwig, R.A. (1991). A DNA transformation competent Arabidopsis genomic library in Agrobacterium Bio/Technology 9, 963-967.
29. Lin, F.-L.M., Sperle, K., and Sternberg, N. (1990) Intermolecular recombination between DNAs introduced into mouse L cells mediated by a non-conservative pathway that leads to crossover. Mol. Cell. Biol. 10, 103-112.
30. Liu, J., Wu, T.-C., and Lichten, M. (1995). The location and structure of double-strand DNA breaks induced during yeast meiosis: Evidence for a covalently linked DNA-protein intermediate. EMBO J. 14, 4599-4608.
31. Lloyd, A.M., Walbot, V., and Davis, R.W. (1992) Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1 Science 258, 1773-1775
32. Marsh, J.L., Erfle, M., and Wykes, E.J. (1984). The plC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation. Gene 32, 481-485.
33. Marion, L., and Browse, J. (1991). Facile transformation of Arabidopsis. Plant Cell Rep 10, 235-239
34. McClintock, B. (1931). Cytological observations of deficiencies involving known genes, translocations and an inversion in Zea mays. Res. Bull. Mo Agric. Exp Stn. 163, 1-30.
35. Myers, R.S., and Stahl, F.W. (1994). Chl and the RecBCD enzyme of Escherichia coli. Annu. Rev Genet. 28, 49-70.
36. Nassif, N., Penney, J., Pal, S., Engels, W.R., and Gloor, G.B. (1994). Efficient copying of nonhomologous sequences from ectopic sites via P-element-induced gap repair. Mol. Cell. Biol. 14, 1613-1625.
37. Nickoloff, J.A., Chen, E.Y.C., and Heffron, F. (1986) A 24-base-pair DNA sequence from the MAT locus stimulates intergenic recombination in yeast. Proc. Natl. Acad. Sci USA 83, 7831-7835.
38. Pelham, H.R.B. (1982). A regulatory upstream promoter element in the Drosophila hsp70 heat-shock gene. Cell 30, 517-528.
39. Perez, P., Tiraby, G., Kallerhoff, J., and Perret, J. (1989). Phleomycin resistance as a dominant selectable marker for plant cell transformation. Plant Mol. Biol. 13, 365-373.
40. Petes, T.D., and Hill, C.W. (1988). Recombination between repeated genes in microorganisms. Annu. Rev. Genet. 22, 147-168.
41. Plasterk, R.H.A., and Groenen, J.T.M. (1992). Targeted alterations of the Caenorhabditis elegans genome by transgene instructed DNA double strand break repair following Td excision. EMBO J. 11, 287-290.
42. Puchta, H., Dujon, B., and Hohn, B. (1993). Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease. Nucleic Acids Res. 21, 5034-5040.
43. Puchta, H., Swoboda, P., Gal, S., Blot, M., and Hohn, B. (1995). Somatic intrachromosomal homologous recombination events in populations of plant siblings. Plant Mol. Biol. 28, 281-292.
44. Puchta, H., Dujon, B., and Hohn, B. (1996). Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination Proc. Natl. Acad Sci. USA 93, 5055-5060.
45. Ray, A., Siddiqi, I., Kolodkin, A.L., and Stahl, F.W. (1988). Intrachromosomal gene conversion induced by a DNA double-strand break in Saccharomyces cerevisiae J. Mol. Biol. 201, 247-260
46. Ray, A., Machin, N., and Stahl, F.W. (1989). A DNA double chain break stimulates triparental recombination in Saccharomyces cerevisiae. Proc Natl Acad. Sci. USA 86, 6225-6229.
47. Rouet, P., Smith, F., and Jasin, M. (1994). Introduction of double-strand breaks into the genome of mouse cells by expression of a rare-cutting endonuclease. Mol. Cell. Biol. 14, 8098-8106.
48. Rudin, N., and Haber, J.E. (1988) Efficient repair of HO-induced chromosomal breaks in Saccharomyces cerevisiae by recombination between flanking homologous sequences. Mol. Cell Biol 8, 3918-3928
49. Rudin, N., Sugarman, E., and Haber, J.E. (1989) Genetic and physical analysis of double-strand break and recombination in Saccharomyces cerevisiae. Genetics 122, 519-534
50. Russell, D.W., Jensen, R., Zoller, M.J., Burke, J., Errede, B., Smith, M., and Herskowitz, I. (1986). Structure of the Saccharomyces cerevisiae HO gene and analysis of its upstream regulatory region. Mol. Cell. Biol. 6, 4281-4294.
51. Schardl, C.L., Byrd, A.D., Benzoin, G., Altschuler, M.A., Hildebrand, D.F., and Hunt, A.G. (1987). Design and construction of a versatile system for the expression of foreign genes in plants. Gene 61, 1-11.
52. Scheid, O.M., Paszkowski, J., and Potrykus, I. (1991). Reversible inactivation of a transgene in Arabidopsis thaliana. Mol. Gen. Genet. 228, 104-112.
53. Schena, M., Lloyd, A.M., and Davis, R.W. (1992). Asteroid-inducible gene expression system for plant cells. Proc. Natl. Acad. Sci. USA 88, 10421-10425
54. Schultz, V.P., and Zakian, V.A. (1994). The Saccharomyces PIF1 DNA helicase inhibits telomere elongation and de novo telomere formation. Cell 67, 145-156.
55. Schwacha, A., and Kleckner, N. (1995). Identification of double Holliday junctions as intermediates in meiotic recombination. Cell 83, 783-791.
56. Segal, A.M., and Roth, J. (1994). Approaches to half-tetrad analysis in bacteria: Recombination between repeated, inverse-order chromosomal sequences. Genetics 136, 27-39.
57. Spena, A., Hain, R., Ziervogel, U., Saedler, H., and Schell, J. (1985). Construction of a heat-inducible gene for plants: Demonstration of heat-inducible activity of the Drosophila hsp70 promoter in plants. EMBO J. 4, 2739-2743.
58. Steiler, H., and Pirrotta, V. (1984). Regulated expression of genes injected into early Drosophila embryos. EMBO J. 3, 165-175.
59. Strathern, J.N., Klar, A.J., Hicks, J.B., Abraham, J.A., Ivy, J.M., Nasmyth, K.A., and McGill, C. (1982). Homothallic switching of yeast mating type cassettes is initiated by a double-stranded cut in the MAT locus. Cell 31, 183-192.
60. Sugawara, N., Ivanov, E.L., Fishman-Lobell, J., Ray, B., Wu, X., and Haber, J.E. (1995) DNA structure-dependent requirements for yeast RAD genes in gene conversion. Nature 373, 84-87
61. Sun, H., Treco, D., Schuttes, N.P., and Szostak, J.W. (1989). Double-strand breaks at an initiation site for meiotic gene conversion. Nature 338, 87-90.
62. Swoboda, P., Gal, S., Hohn, B., and Puchta, H. (1994) Intrachromosomal homologous recombination in whole plants. EMBO J. 13, 484-489.
63. Szostak, J.W., Orr-Weaver, T.L., Rothstein, R.J., and Stahl, F.W. (1983). The double-strand-break repair model for recombination. Cell 33, 25-35.
64. Tovar, J., and Lichtenstein, C. (1992). Somatic and meiotic chromosomal recombination between inverted duplications in transgenic tobacco plants. Plant Cell 4, 319-322.
65. Wing, D., Koncz, C., and Schell, J. (1989). Conserved function in Nicotiana tabacum of a single Dmsophila hsp70 promoter heat shock element when fused to a minimal T-DNA promoter. Mol. Gen. Genet. 19, 9-16.
66. Wu, T.-C., and Lichten, M. (1994). Meiosis-induced double-strand break sites determined by yeast chromatin structure. Science 263, 515-518.