Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome

Plant Journal

Volumn 35, Issue 5, 2003, Pages 604-612

  Orel, Nadiya ^a   Kyryk, Anzhela ^a   Puchta, Holger ^a,b  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b UNIVERSITY OF KARLSRUHE   (Germany)

Author keywords

Deletion; Gene conversion; Recombination; Single strand annealing; Synthesis dependent strand annealing

Indexed keywords

DNA SEQUENCES; GENETIC ENGINEERING; PLANT CELL CULTURE;

SOMATIC PLANT CELLS;

PLANTS (BOTANY);

ARABIDOPSIS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA REPAIR; GENOME, PLANT; GLUCURONIDASE; PLANTS, GENETICALLY MODIFIED; RECOMBINATION, GENETIC; TANDEM REPEAT SEQUENCES;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0141681133     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01832.x     Document Type: Article

References (42)

1. Athma, P. and Peterson, T.A. (1991) Ac induces homologous recombination at the maize P locus. Genetics, 128, 163-173.
2. Bilang, R., Peterhans, A., Bogucki, A. and Paszkowski, J. (1992) Single-stranded DNA as recombination substrate in plants assessed by stable and transient expression. Mol. Cell. Biol. 12, 329-336.
3. Chiurazzi, M., Ray, A., Viret, J.-F., Perera, R., Wang, X.-H., Lloyd, A. and Signer, E.R. (1996) Enhancement of somatic intrachromosomal homologous recombination in Arabidopsis by HO-endonuclease. Plant Cell, 8, 2057-2066.
4. De Groot, M.J.A., Offringa, R., Does, M.P., Hooykaas, P.J.J. and van den Elzen, P.J.M. (1992) Mechanisms of intermolecular homologous recombination in plants as studied with single- and double-stranded DNA molecules. Nucl. Acids Res. 20, 2785-2794.
5. Doutriaux, M.P., Couteau, F., Bergounioux, C. and White, C. (1998) Isolation and characterisation of the RAD51 and DMC1 homologs from Arabidopsis thaliana. Mol. Gen. Genet. 257, 283-291.
6. Fishman-Lobell, J., Rudin, N. and Haber, J.E. (1992) Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated. Mol. Cell Biol. 12, 1292-1303.
7. Gisler, B., Salomon, S. and Puchta, H. (2002) The role of double-strand break-induced allelic homologous recombination in somatic plant cells. Plant J. 32, 277-284.
8. Gloor, G.B., Nassif, N.A., Johnson-Schlitz, D.M., Preston, C.R. and Engels, W.R. (1991) Targeted gene replacement in Drosophila via P-element-induced gap repair. Science, 253, 1110-1117.
9. Gorbunova, V. and Levy, A.A. (1999) How plants make ends meet: DNA double-strand break repair. Trends Plant Sci. 4, 263-269.
10. Hajdukiewicz, P., Svab, Z. and Maliga, P. (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol. Biol. 25, 989-994.
11. Hartung, F. and Puchta, H. (2000) Molecular characterization of two paralogous SPO11 homologues in Arabidopsis thaliana. Nucl. Acids Res. 28, 1548-1554.
12. Hays, J.B. (2002) Arabidopsis thaliana, a versatile model system for study of eukaryotic genome-maintenance functions. DNA Repair, 1, 579-600.
13. Kirik, A., Salomon, S. and Puchta, H. (2000) Species-specific double-strand break repair and genome evolution in plants. EMBO J. 19, 5562-5566.
14. Klimyuk, V. and Jones, J.D.G. (1997) AtDMC1, the Arabidopsis homologue of the yeast DMC1 gene: characterization, transposon induced allelic variation and meiosis specific expression of a pAtDMCI: GUS fusion. Plant J. 11, 1-14.
15. Lin, F.-L., Sperle, K. and Sternberg, N. (1984) Model for homologous recombination during transfer of DNA into mouse L cells: role for DNA ends in the recombination process. Mol. Cell. Biol. 4, 1020-1034.
16. Lin, F.-L., Sperle, K. and Sternberg, N. (1990) Intermolecular recombination between DNAs introduced into mouse L cells is mediated by a nonconservative pathway that leads to crossover products. Mol. Cell. Biol. 10, 103-112.
17. Lucht, J.M., Mauch-Mani, B., Steiner, H.Y., Metraux, J.P., Ryals, J. and Hohn, B. (2002) Pathogen stress increases somatic recombination frequency in Arabidopsis. Nat. Genet, 30, 311-314.
18. Nicolas, A.L., Munz, P.L. and Young, C.S. (1995) A modified single-strand annealing model best explains the joining of DNA double-strand breaks in mammalian cells and cell extracts. Nucl. Acids Res. 23, 1036-1043.
19. Paques, F. and Haber, J.E. (1999) Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63, 349-404.
20. Parniske, M. and Jones, J.D. (1999) Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family. Proc. Natl. Acad. Sci. USA, 96, 5850-5855.
21. Parniske, M., Hammond-Kosack, K.E., Golstein, C., Thomas. C.M., Jones, D.A., Harrison, K., Wulff, B.B. and Jones, J.D. (1997) Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell, 91, 821-832.
22. Puchta, H. (1998) Repair of genomic double-strand breaks in somatic plant cells by one-sided invasion of homologous sequences. Plant J. 13, 331-339.
23. Puchta, H. (1999) DSB-induced recombination between ectopic homologous sequences in somatic plant cells. Genetics, 152, 1173-1181.
24. Puchta, H. (2000) Removing selectable marker genes: taking the shortcut. Trends Plant Sci. 5, 273-274.
25. Puchta, H. and Hohn, B. (1991) The mechanism of extrachromosomal homologous DNA recombination in plant cells. Mol. Gen. Genet. 230, 1-7.
26. Puchta, H. and Hohn, B. (1996) From centiMorgans to basepairs: homologous recombination in plants. Trends Plant Sci. 1, 340-348.
27. Puchta, H., Dujon, B. and Hohn, B. (1993) Homologous recombination in plant cells is enhanced by in vivo induction of double-strand breaks into DNA by a site-specific endonuclease. Nucl. Acids Res. 21, 5034-5040.
28. Puchta, H., Swoboda, P., Gal, S., Blot, M. and Hohn, B. (1995) Somatic intrachromosomal homologous recombination events in populations of plant siblings. Plant Mol. Biol. 28, 281-292.
29. Puchta, H., Dujon, B. and Hohn, B. (1996) Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc. Natl. Acad. Sci. USA, 93, 5055-5060.
30. Ramakrishna, W., Emberton, J., SanMiguel, P., Ogden, M., Llaca, V., Messing, J. and Bennetzen, J.L. (2002) Comparative sequence analysis of the sorghum rph region and the maize rp1 resistance gene complex. Plant Physiol. 130, 1728-1738.
31. Ray, A. and Langer, M. (2002) Homologous recombination: ends as the means. Trends Plant Sci. 7, 435-440.
32. Rubin, E. and Levy, A.A. (1997) Abortive gap repair: underlying mechanism for Ds element formation. Mol. Cell Biol. 17, 6294-6302.
33. Salomon, S. and Puchta, H. (1998) Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. EMBO J. 17, 6086-6095.
34. Shalev, G. and Levy, A.A. (1997) The maize transposable element Ac induces recombination between the donor site and an homologous ectopic sequence. Genetics, 146, 1143-1151.
35. Siebert, R. and Puchta, H. (2002) Efficient repair of genomic double-strand breaks via homologous recombination between directly repeated sequences in the plant genome. Plant Cell, 14, 1121-1131.
36. Simpson, G.G., Roe, A. and Lewontin, R.C. (1960) Quantitative Zoology. New York: Harcort, Brace and World.
37. Swoboda, P., Gal, S., Hohn, B. and Puchta, H. (1994) Intrachromosomal homologous recombination in whole plants. EMBO J. 13, 481-489.
38. Tinland, B., Hohn, B. and Puchta, H. (1994) Agrobacterium tumefaciens transfers single stranded T-DNA into the plant cell nucleus. Proc. Natl. Acad. Sci. USA, 91, 8000-8004.
39. Vicient, C.M., Suoniemi, A., Anamthawat-Jonsson, K., Tanskanen, J., Beharav, A., Nevo, E. and Schulman, A.H. (1999) Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum. Plant Cell, 11, 1769-1784.
40. Xiao, Y.L. and Peterson, T. (2000) Intrachromosomal homologous recombination in Arabidopsis induced by a maize transposon. Mol. Gen. Genet. 263, 22-29.
41. Xiao, Y.L., Li, X. and Peterson, T. (2000) Ac insertion site affects the frequency of transposon-induced homologous recombination at the maize p1 locus. Genetics, 156, 2007-2017.
42. Zubko, E., Scutt, C. and Meyer, P. (2000) Intrachromosomal recombination between attP regions as a tool to remove selectable marker genes from tobacco transgenes. Nat. Biotechnol. 18, 442-445.