-
1
-
-
33847610153
-
-
Nat. Genet. 21, (1s): Entire volume (1999).
-
(1999)
Nat. Genet.
, vol.21
-
-
-
3
-
-
33847625093
-
-
Elsevier, Amsterdam, in press
-
S. Zhou, J. Herschleb, and D. C. Schwartz, A Single Molecule System for Whole Genome Analysis. New Methods in DNA Sequencing (Elsevier, Amsterdam, in press), p. 16.
-
A Single Molecule System for Whole Genome Analysis. New Methods in DNA Sequencing
, pp. 16
-
-
Zhou, S.1
Herschleb, J.2
Schwartz, D.C.3
-
4
-
-
0030947539
-
-
0027-8424 10.1073/pnas.94.12.6185
-
C. G. Baumann, S. B. Smith, V. A. Boomfield, and C. Bustamante, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 10.1073/pnas.94.12.6185 94, 6185 (1997).
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 6185
-
-
Baumann, C.G.1
Smith, S.B.2
Boomfield, V.A.3
Bustamante, C.4
-
7
-
-
6344260593
-
-
0002-7863 10.1021/ja00153a017
-
A. D. MacKerell, Jr., J. Wiórkiewicz-Kuczera, and M. Karplus, J. Am. Chem. Soc. 0002-7863 10.1021/ja00153a017 117, 11946 (1995).
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 11946
-
-
MacKerell Jr., A.D.1
Wiórkiewicz-Kuczera, J.2
Karplus, M.3
-
12
-
-
33847651004
-
-
Elsevier, Amsterdam
-
T. E. Cheatham III, Molecular Modeling and Atomistic Simulation of Nucleic Acids (Elsevier, Amsterdam, 2005), Vol. 1, Chap., pp. 75-89.
-
(2005)
Molecular Modeling and Atomistic Simulation of Nucleic Acids
, vol.1
, pp. 75-89
-
-
Cheatham Iii, T.E.1
-
13
-
-
0344270866
-
-
0027-8424 10.1073/pnas.2036378100
-
M. F. Hagan, A. R. Dinner, D. Chandler, and A. K. Chakraborty, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 10.1073/pnas.2036378100 100, 13922 (2003).
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 13922
-
-
Hagan, M.F.1
Dinner, A.R.2
Chandler, D.3
Chakraborty, A.K.4
-
16
-
-
33646139659
-
-
0006-3495
-
P. K. Maiti, T. A. Pascal, N. Vaidehi, J. Heo, and W. A. Goddard III, Biophys. J. 90, 1463 (2005). 0006-3495
-
(2005)
Biophys. J.
, vol.90
, pp. 1463
-
-
Maiti, P.K.1
Pascal, T.A.2
Vaidehi, N.3
Heo, J.4
Goddard Iii, W.A.5
-
17
-
-
26944443829
-
-
0377-0257 10.1016/j.jnnfm.2005.05.011
-
E. S. G. Shaqfeh, J. Non-Newtonian Fluid Mech. 0377-0257 10.1016/j.jnnfm.2005.05.011 130, 1 (2005).
-
(2005)
J. Non-Newtonian Fluid Mech.
, vol.130
, pp. 1
-
-
Shaqfeh, E.S.G.1
-
19
-
-
0042992582
-
-
0021-9606 10.1063/1.1575200
-
R. M. Jendrejack, D. C. Schwartz, M. D. Graham, and J. J. de Pablo, J. Chem. Phys. 0021-9606 10.1063/1.1575200 119, 1165 (2003).
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 1165
-
-
Jendrejack, R.M.1
Schwartz, D.C.2
Graham, M.D.3
De Pablo, J.J.4
-
20
-
-
1442306163
-
-
0021-9606 10.1063/1.1637331
-
R. M. Jendrejack, D. C. Schwartz, J. J. de Pablo, and M. D. Graham, J. Chem. Phys. 0021-9606 10.1063/1.1637331 120, 2513 (2004).
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 2513
-
-
Jendrejack, R.M.1
Schwartz, D.C.2
De Pablo, J.J.3
Graham, M.D.4
-
23
-
-
15244340199
-
-
0024-9297 10.1021/ma0480796
-
C. M. Schroeder, R. E. Teixeira, E. S. G. Shaqfeh, and S. Chu, Macromolecules 0024-9297 10.1021/ma0480796 38, 1967 (2005).
-
(2005)
Macromolecules
, vol.38
, pp. 1967
-
-
Schroeder, C.M.1
Teixeira, R.E.2
Shaqfeh, E.S.G.3
Chu, S.4
-
24
-
-
0023944881
-
-
0006-3525 10.1002/bi360270403
-
R. C. Maroun and W. K. Olson, Biopolymers 0006-3525 10.1002/bip.360270403 27, 561 (1988).
-
(1988)
Biopolymers
, vol.27
, pp. 561
-
-
Maroun, R.C.1
Olson, W.K.2
-
25
-
-
0023947744
-
-
0006-3525 10.1002/bi360270404
-
R. C. Maroun and W. K. Olson, Biopolymers 0006-3525 10.1002/bip.360270404 27, 585 (1988).
-
(1988)
Biopolymers
, vol.27
, pp. 585
-
-
Maroun, R.C.1
Olson, W.K.2
-
26
-
-
0024504731
-
-
0006-3525 10.1002/bi360280407
-
M. -H. Hao and W. K. Olson, Biopolymers 0006-3525 10.1002/bip.360280407 28, 873 (1989).
-
(1989)
Biopolymers
, vol.28
, pp. 873
-
-
Hao, M.-H.1
Olson, W.K.2
-
27
-
-
0024590138
-
-
0022-2836 10.1016/0022-2836(89)90227-1
-
R. K. Z. Tan and S. C. Harvey, J. Mol. Biol. 0022-2836 10.1016/0022-2836(89)90227-1 205, 573 (1989).
-
(1989)
J. Mol. Biol.
, vol.205
, pp. 573
-
-
Tan, R.K.Z.1
Harvey, S.C.2
-
28
-
-
0030220837
-
-
0006-3525 10.1002/(SICI)1097-0282(199608)39:2<259::AID-BIP12>3.0. CO;2-9
-
R. K. Z. Tan, D. Sprous, and S. C. Harvey, Biopolymers 0006-3525 10.1002/(SICI)1097-0282(199608)39:2<259::AID-BIP12>3.0.CO;2-9 39, 259 (1996).
-
(1996)
Biopolymers
, vol.39
, pp. 259
-
-
Tan, R.K.Z.1
Sprous, D.2
Harvey, S.C.3
-
29
-
-
0030220418
-
-
0006-3525 10.1002/(SICI)1097-0282(199608)39:2<243::AID-BIP11>3.0. CO;2-F
-
D. Sprous, R. K. Z. Tan, and S. C. Harvey, Biopolymers 0006-3525 10.1002/(SICI)1097-0282(199608)39:2<243::AID-BIP11>3.0.CO;2-F 39, 243 (1996).
-
(1996)
Biopolymers
, vol.39
, pp. 243
-
-
Sprous, D.1
Tan, R.K.Z.2
Harvey, S.C.3
-
33
-
-
1642365792
-
-
0951-7715 10.1088/0951-7715/17/2/R01
-
M. Peyrard, Nonlinearity 0951-7715 10.1088/0951-7715/17/2/R01 17, R1 (2004).
-
(2004)
Nonlinearity
, vol.17
, pp. 1
-
-
Peyrard, M.1
-
34
-
-
1242336964
-
-
0006-3525 10.1002/bi10529
-
J. C. LaMarque, Biopolymers 0006-3525 10.1002/bip.10529 73, 348 (2004).
-
(2004)
Biopolymers
, vol.73
, pp. 348
-
-
Lamarque, J.C.1
-
37
-
-
0032735433
-
-
0006-3495
-
N. Bruant, D. Flatters, R. Lavery, and D. Genest, Biophys. J. 77, 2366 (1999). 0006-3495
-
(1999)
Biophys. J.
, vol.77
, pp. 2366
-
-
Bruant, N.1
Flatters, D.2
Lavery, R.3
Genest, D.4
-
38
-
-
17444405896
-
-
0021-9606 10.1063/1.1869417
-
H. L. Tepper and G. A. Voth, J. Chem. Phys. 0021-9606 10.1063/1.1869417 122, 124906 (2005).
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 124906
-
-
Tepper, H.L.1
Voth, G.A.2
-
40
-
-
26944440021
-
-
1063-651X 10.1103/PhysRevE.71.051902
-
M. Sales-Pardo, R. Guimer̀, A. A. Moreira, J. Widom, and L. A. N. Amaral, Phys. Rev. E 1063-651X 10.1103/PhysRevE.71.051902 71, 051902 (2005).
-
(2005)
Phys. Rev. e
, vol.71
, pp. 051902
-
-
Sales-Pardo, M.1
Guimer̀, R.2
Moreira, A.A.3
Widom, J.4
Amaral, L.A.N.5
-
41
-
-
0000946971
-
-
CRC Handbook of Biochemistry and Molecular Biology, 3rd ed. (CRC Press, Cleveland
-
P. J. Struther Arnott, C. Smith, and R. Chandrasekaran. Atomic Coordinates and Molecular Conformations for DNA-DNA, RNA-RNA, and DNA-RNA Helices, Vol. 2 of CRC Handbook of Biochemistry and Molecular Biology, 3rd ed. (CRC Press, Cleveland, 1976), pp. 411-422.
-
(1976)
Atomic Coordinates and Molecular Conformations for DNA-DNA, RNA-RNA, and DNA-RNA Helices
, vol.2
, pp. 411-422
-
-
Struther Arnott, P.J.1
Smith, C.2
Chandrasekaran, R.3
-
43
-
-
0001720011
-
-
0021-9606 10.1063/1.481261
-
T. X. Hoang and M. Cieplak, J. Chem. Phys. 0021-9606 10.1063/1.481261 112, 6851 (2000).
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 6851
-
-
Hoang, T.X.1
Cieplak, M.2
-
44
-
-
0033614819
-
-
0006-2960
-
J. A. Holbrook, M. W. Capp, R. M. Saecker, and M. Thomas Record, Jr., Biochemistry 38, 8409 (1999). 0006-2960
-
(1999)
Biochemistry
, vol.38
, pp. 8409
-
-
Holbrook, J.A.1
Capp, M.W.2
Saecker, R.M.3
Thomas Record Jr., M.4
-
45
-
-
1642380887
-
-
0006-2960
-
R. Owczarzy, Y. You, B. G. Moreira, J. A. Manthey, L. Huang, M. A. Behlke, and J. A. Walder, Biochemistry 43, 3537 (2004). 0006-2960
-
(2004)
Biochemistry
, vol.43
, pp. 3537
-
-
Owczarzy, R.1
You, Y.2
Moreira, B.G.3
Manthey, J.A.4
Huang, L.5
Behlke, M.A.6
Walder, J.A.7
-
48
-
-
33847676469
-
-
http://www.restrictionmapper.org
-
-
-
-
50
-
-
84986519238
-
-
0192-8651 10.1002/jcc.540130812
-
S. Kumar, D. Bouzida, R. H. Swendsen, P. A. Kollman, and J. M. Rosenberg, J. Comput. Chem. 0192-8651 10.1002/jcc.540130812 13, 1011 (1992).
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
52
-
-
0023746243
-
-
0883-9182 10.1146/annurev.bb.17.060188.001405
-
P. J. Hagerman, Annu. Rev. Biophys. Biophys. Chem. 0883-9182 10.1146/annurev.bb.17.060188.001405 17, 265 (1988).
-
(1988)
Annu. Rev. Biophys. Biophys. Chem.
, vol.17
, pp. 265
-
-
Hagerman, P.J.1
-
56
-
-
33847691213
-
-
http://www.gromacs.org
-
-
-
-
57
-
-
33847679100
-
-
K. Jo, D. M. Dinghra, T. Odijk, J. J. de Pablo, M. D. Graham, R. Runnheim, D. Forrest, and D. C. Schwartz (unpublished).
-
-
-
Jo, K.1
Dinghra, D.M.2
Odijk, T.3
De Pablo, J.J.4
Graham, M.D.5
Runnheim, R.6
Forrest, D.7
Schwartz, D.C.8
-
59
-
-
1942423138
-
-
0006-3495
-
M. C. Murphy, Biophys. J. 86, 2530 (2004). 0006-3495
-
(2004)
Biophys. J.
, vol.86
, pp. 2530
-
-
Murphy, M.C.1
|