Efficacy of recA gene sequence analysis in the identification and discrimination of Lactobacillus hilgardii strains isolated from stuck wine fermentations

International Journal of Food Microbiology

Volumn 115, Issue 1, 2007, Pages 70-78

  Rodríguez, Héctor ^a   de las Rivas, Blanca ^a   Muñoz, Rosario ^a  

^a INSTITUTO DE FERMENTACIONES INDUSTRIALES CSIC   (Spain)

Author keywords

Heterofermentative lactobacilli; Lactobacillus hilgardii; Lactobacillus vermiforme; recA gene; Typing method; Wine

Indexed keywords

BACTERIAL DNA; BIOGENIC AMINE; DNA 16S; URETHAN;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; DNA SEQUENCE; FERMENTATION; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC HETEROGENEITY; LACTOBACILLUS; LACTOBACILLUS HILGARDII; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; RECA GENE; RESTRICTION FRAGMENT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; VINICULTURE; WINE; WINE INDUSTRY;

BASE SEQUENCE; DNA PRIMERS; DNA, BACTERIAL; FERMENTATION; GENE AMPLIFICATION; LACTOBACILLUS; LACTOBACILLUS BREVIS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; REC A RECOMBINASES; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; WINE;

LACTOBACILLUS BREVIS; LACTOBACILLUS BUCHNERI; LACTOBACILLUS HILGARDII; LACTOBACILLUS VERMIFORME;

EID: 33847339741     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2006.10.032     Document Type: Article

References (33)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402
2. 1B: structural and functional study of the arcABC genes. Gene 301 (2002) 61-66
3. Azevedo Z., Couto J.A., and Hogg T. Citrulline as the main precursor of ethyl carbamate in model fortified wines inoculated with Lactobacillus hilgardii: a marker of the levels in a spoiled fortified wine. Letters in Applied Microbiology 34 (2002) 32-36
4. Bisson L.F. Stuck and sluggish fermentations. American Journal of Enology and Viticulture 50 (1999) 107-119
5. De Angelis M., Mariotti L., Rossi J., Servili M., Fox P.F., Rollán G., and Gobbetti M. Arginine catabolism by sourdough lactic acid bacteria: purification and characterization of the arginine deiminase pathway enzymes from Lactobacillus sanfranciscensis CB1. Applied and Environmental Microbiology 68 (2002) 6193-6201
6. Du Plessis H.W., Dicks L.M.T., Pretorius I.S., Lambrechts M.G., and du Toit M. Identification of lactic acid bacteria isolated from South African brandy base wines. International Journal of Food Microbiology 91 (2004) 19-29
7. Duwat P., Ehrlich S.D., and Gruss A. Use of degenerate primers for polymerase chain reaction cloning and sequencing of the Lactococcus lactis subsp. lactis recA gene. Applied and Environmental Microbiology 58 (1992) 2674-2678
8. Kandler O., and Weiss N. Genus Lactobacillus. In: Sneath P.H.A., Mair N.S., Sharpe M.E., and Holt J.G. (Eds). Bergey's Manual of Systematic Bacteriology (1986), The Williams and Wilkins, Baltimore 1208-1234
9. Enright M.C., and Spratt B.G. Multilocus sequence typing. Trends in Microbiology 7 (1999) 482-487
10. Farrow J.A.E., Philips B.A., and Collins M.D. Nucleic acid studies on some heterofermentative lactobacilli: description of Lactobacillus malefermentans sp. nov. and Lactobacillus parabuchneri sp. nov. FEMS Microbiology Letters 55 (1986) 163-168
11. Felis G.E., Dellaglio F., Mizzi L., and Torriani S. Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group. International Journal of Systematic and Evolutionary Microbiology 51 (2001) 2113-2117
12. Huey B., and Hall J. Hypervariable DNA fingerprinting in E. coli minisatellite probe from bacteriophage M13. Journal of Bacteriology 171 (1989) 2528-2532
13. Konings W.W. The cell membrane and the struggle for life of lactic acid bacteria. Antonie van Leeuwenhoek 82 (2002) 3-27
14. Le Jeune C., and Lonvaud-Funel A. Lactobacillus hilgardii and Lactobacillus brevis DNA analysis by restriction fragment length polymorphism (RFLP). Food Microbiology 11 (1994) 195-202
15. Le Jeune C., Lonvaud-Funel A., Ten Brick B., Holstra H., and van der Vossen J.M.B.M. Development of a detection system for histidine decarboxylating lactic acid bacteria based on DNA probes, PCR and activity test. Journal of Applied Bacteriology 78 (1995) 316-326
16. Liu S.Q., and Pilone G.J. A review: arginine metabolism in wine lactic acid bacteria and its practical significance. Journal of Applied Microbiology 84 (1998) 315-327
17. Lonvaud-Funel A. Lactic acid bacteria in the quality improvement and depreciation of wine. Antonie van Leeuwenhoek 76 (1999) 317-331
18. Lucas P., and Lonvaud-Funel A. Purification and partial gene sequence of the tyrosine decarboxylase of Lactobacillus brevis IOEB 9809. FEMS Microbiology Letters 211 (2002) 85-89
19. Marchesi J.R., Sato T., Weghtman A.J., Martin T.A., Fry J.C., Hion S.J., and Wade W.G. Design and evaluation of useful bacterium-specific DNA primers that amplify genes coding for bacterial 16S rRNA. Applied and Environmental Microbiology 84 (1998) 117-123
20. Marcobal A., de las Rivas B., Moreno-Arribas M.V., and Muñoz R. Multiplex PCR method for the simultaneous detection of histamine-, tyramine-, and putrescine-producing lactic acid bacteria in foods. Journal of Food Protection 68 (2005) 874-878
21. Moreno-Arribas M.V., Torlois S., Joyeux A., Bertrand A., and Lonvaud-Funel A. Isolation, properties and behaviour of tyramine-producing lactic acid bacteria from wine. Journal of Applied Microbiology 88 (2000) 584-593
22. Moreno-Arribas M.V., Polo M.C., Jorganes F., and Muñoz R. Screening of biogenic amine production by lactic acid bacteria isolated from grape must and wine. International Journal of Food Microbiology 84 (2003) 117-123
23. Pidoux M., Marshall V.M., Zanoui P., and Brooker B. Lactobacilli isolates from sugary kefir grains capable of polysaccharide production and minicell formation. Journal of Applied Bacteriology 69 (1990) 311-320
24. Rossetti L., and Giraffa G. Rapid identification of dairy lactic acid bacteria by M13-generated, RAPD-PCR fingerprint databases. Journal of Microbiological Methods 63 (2005) 135-144
25. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd ed (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
26. Sohier D., Coulon J., and Lonvaud-Funel A. Molecular identification of Lactobacillus hilgardii and genetic relatedness with Lactobacillus brevis. International Journal of Systematic Bacteriology 49 (1999) 1075-1081
27. Sponholz W.R. Wine spoilage by microorganisms. In: Fleet G.H. (Ed). Wine Microbiology and Biotechnology (1993), Hardwood Academic Publisher 395-420
28. Stratiotis A.L., and Dicks L.M.T. Identification of Lactobacillus spp. isolated from different phases during the production of a South African fortified wine. South African Journal of Enology and Viticulture 23 (2002) 14-21
29. Torriani S., Felis G.E., and Dellaglio F. Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers. Applied and Environmental Microbiology 67 (2001) 3450-3454
30. Vaquero I., Marcobal A., and Muñoz R. Tannase activity by lactic acid bacteria isolated from grape must and wine. International Journal of Food Microbiology 96 (2004) 199-204
31. Vescovo M., Dellaglio F., Bottazzi V., and Sarra P.G. Deoxyribonucleic acid homology among Lactobacillus species of the subgenus Betabacterium Orla-Jensen. Microbiology 2 (1979) 317-330
32. Zavaleta A.I., Martínez-Murcia A.J., and Rodríguez-Valera F. 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous. Microbiology 142 (1996) 2105-2114
33. Zavaleta A.I., Martínez-Murcia A.J., and Rodríguez-Valera F. Intraspecific genetic diversity of Oenococcus oeni as derived from DNA fingerprinting and sequence analyses. Applied and Environmental Microbiology 63 (1997) 1261-1267