Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group

International Journal of Systematic and Evolutionary Microbiology

Volumn 51, Issue 6, 2001, Pages 2113-2117

  Felis, G E ^a   Dellaglio, F ^a   Mizzi, L ^a   Torriani, S ^a  

^a UNIVERSITY OF VERONA   (Italy)

Author keywords

Lactobacillus casei; recA; Taxonomy

Indexed keywords

RECA PROTEIN;

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; GENETIC ANALYSIS; LACTOBACILLUS; LACTOBACILLUS CASEI; LACTOBACILLUS PARACASEI; LACTOBACILLUS ZEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TAXONOMY;

LACTOBACILLUS CASEI; LACTOBACILLUS PARACASEI; LACTOBACILLUS ZEAE; POSIBACTERIA; PROKARYOTA;

EID: 0035197715     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-51-6-2113     Document Type: Article

References (40)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Comparative analysis of the genes encoding 23S-5S rRNA intergenic spacer regions of Lactobacillus casei-related strains
3. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
4. Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov
5. Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA
6. Deoxyribonucleic acid homology among Lactobacillus species of the subgenus Streptobacterium Orla-Jensen
7. Designation of ATCC 334 in place of ATCC 393 (NCDO 161) as the neotype strain of Lactobacillus casei subsp. casei, and rejection of the name Lactobacillus paracasei (Collins et al., 1989). Request for an Opinion
8. The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an Opinion
9. Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and name Lactobacillus paracasei
10. A general method for cloning recA genes of gram-positive bacteria by polymerase chain reaction
11. Degenerate oligonucleotide primers for enzymatic amplification of recA sequences from gram-positive bacteria and mycoplasmas
12. The RecA protein as a model molecule for the molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S RNAs from the same species
13. Confidence limits on phylogenies: An approach using the bootstrap
14. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
15. The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences
16. Evolutionary relationships among bacteria: Does 16S rRNA provide all the answers?
17. Lactobacillus casei (Orla-Jensen) comb. nov
18. Ribosomal RNA trees misleading?
19. Evolutionary change in 5S RNA secondary structure and a phylogenetic tree of 54 5S RNA species
20. Improving the accuracy of phylogenetic estimation by combining different methods
21. Evaluation of using a short region of the recA gene for the rapid and sensitive speciation of dominant bifidobacteria in the human large intestine
22. The order of sequence alignment can bias the selection of tree topology
23. Evolution of the recA gene and the molecular phylogeny of bacteria
24. A recA gene phylogenetic analysis confirms the close proximity of Frankia to Acidothermus
25. A procedure for the isolation of DNA from microorganisms
26. Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa
27. 16S-23S and 23S-5S intergenic spacer regions of lactobacilli: Nucleotide sequence, secondary structure and comparative analysis
28. The neighbor-joining method: A new method for reconstructing phylogenetic trees
29. Networks and groups within the genus Neisseria: Analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species
30. Universal tree of life
31. The importance of using outgroup reference organisms in phylogenetic studies: The Atopobium case
32. Structure of the recA protein-ADP complex
33. Lactobacillus arizonensis sp. nov., isolated from jojoba meal
34. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
35. Two distinct mechanisms cause heterogeneity of 16S rRNA
36. Lactobacillus casei and related species: A review
37. Genetic diversity among Arthrobacter species collected across a heterogeneous series of terrestrial deep-subsurface sediments as determined on the basis of 16S rRNA and recA gene sequences
38. Action of the Judicial Commission of the International Committee on Systematic Bacteriology on Requests for Opinions published between January 1985 and July 1993
39. Lactobacillus kimchii sp. nov., a new species from kimchi