Substrate binding and protein conformational dynamics measured by 2D-IR vibrational echo spectroscopy

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 8, 2007, Pages 2637-2642

  Finkelstein, Ilya J ^a   Ishikawa, Haruto ^a   Kim, Seongheun ^a   Massari, Aaron M ^a,b   Fayer, M D ^a  

^a STANFORD UNIVERSITY   (United States)

^b University of Minnesota   (United States)

Author keywords

Horseradish peroxidase; Ultrafast

Indexed keywords

CARBON MONOXIDE; HORSERADISH PEROXIDASE;

ARTICLE; ENZYME ACTIVE SITE; ENZYME SUBSTRATE COMPLEX; INFRARED SPECTROSCOPY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN CONFORMATION; SPECTROMETER; SPECTROSCOPY; VIBRATION;

ANIMALS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; HORSERADISH PEROXIDASE; HORSES; MYOGLOBIN; PROTEIN CONFORMATION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SUBSTRATE SPECIFICITY;

ARMORACIA RUSTICANA;

EID: 33847279911     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0610027104     Document Type: Article

References (46)

1. Jimenez R, Salazar G, Yin J, Joo T, Romesberg FE (2004) Proc Natl Acad Sci USA 101:3803-3808.
2. Ma B, Shatsky M, Wolfson HJ, Nussinov R (2002) Protein Sci 11:184-197.
3. Vazquez-Laslop N, Zheleznova EE, Markham PN, Brennan RG, Neyfakh AA (2000) Biochem Soc Trans 28:517-520.
4. Veitch NC, Smith AT (2000) Adv Inorg Chem 51:107-162.
5. Fenimore PW, Frauenfelder H, McMahon BH, Parak FG (2002) Proc Natl Acad Sci USA 99:16047-16051.
6. Frauenfelder H, McMahon BH, Austin RH, Chu K, Groves JT (2001) Proc Natl Acad Sci USA 98:2370-2374.
7. Massari AM, Finkelstein IJ, Fayer MD (2006) J Am Chem Soc 128:3990-3997.
8. Merchant KA, Noid WG, Akiyama R, Finkelstein IJ, Goun A, McClain BL, Loring RF, Fayer MD (2003) J Am Chem Soc 125:13804-13818.
9. Mukherjee P, Kass I, Arkin IT, Zanni MT (2006) Proc Natl Acad Sci USA 103:3528-3533.
10. Chung HS, Khalil M, Smith AW, Ganim Z, Tokmakoff A (2005) Proc Natl Acad Sci USA 102:612-617.
11. Wang J, Chen J, Hochstrasser RM (2006) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 110:7545-7555.
12. Bredenbeck J, Helbing J, Kumita JR, Woolley GA, Hamm P (2005) Proc Natl Acad Sci USA 102:2379-2384.
13. Finkelstein IJ, Goj A, McClain BL, Massari AM, Merchant KA, Loring RF, Fayer MD (2005) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 109:16959-16966.
14. Massari AM, McClain BL, Finkelstein IJ, Lee AP, Reynolds HL, Bren KL, Fayer MD (2006) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 110:18803-18810.
15. Veitch NC (2004) Phytochemistry 65:249-259.
16. Aitken SM, Turnbull JL, Percival MD, English AM (2001) Biochemistry 40:13980-13989.
17. Spiro TG, Wasbotten IH (2005) J Inorg Biochem 99:34-44.
18. Kaposi AD, Vanderkooi JM, Stavrov SS (2006) Biophys J 91:4191-4200.
19. Khajehpour M, Troxler T, Vanderkooi JM (2003) Biochemistry 42:2672-2679.
20. Kaposi AD, Prabhu NV, Dalosto SD, Sharp KA, Wright WW, Stavrov SS, Vanderkooi JM (2003) Biophys Chem 106:1-14.
21. Williams RB, Loring RF, Fayer MD (2001) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 105:4068-4071.
22. Park ES, Andrews SS, Hu RB, Boxer SG (1999) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 103:9813-9817.
23. Summers JB, Mazdiyasni H, Holms JH, Ratajczyk JD, Dyer RD, Carter GW (1987) J Med Chem 30:574-580.
24. Carlsson GH, Nicholls P, Svistunenko D, Berglund GI, Hajdu J (2005) Biochemistry 44:635-642.
25. Meno K, Jennings S, Smith AT, Henriksen A, Gajhede M (2002) Acta Crystallogr D 58:1803-1812.
26. Gajhede M, Schuller DJ, Henriksen A, Smith AT, Poulos TL (1997) Nat Struct Biol 4:1032-1038.
27. Henriksen A, Gajhede M, Baker P, Smith AT, Burke JF (1995) Acta Crystallogr D 51:121-123.
28. Howes BD, Heering HA, Roberts TO, Schneider-Belhadadd F, Smith AT, Smulevich G (2001) Biopolymers 62:261-267.
29. Howes BD, Rodriguez-Lopez JN, Smith AT, Smulevich G (1997) Biochemistry 36:1532-1543.
30. Smulevich G, Feis A, Indiani C, Becucci M, Marzocchi MP (1999) J Biol Inorg Chem 4:39-47.
31. Kaposi AD, Fidy J, Manas ES, Vanderkooi JM, Wright WW (1999) Biochim Biophys Acta 1435:41-50.
32. Henriksen A, Schuller DJ, Meno K, Welinder KG, Smith AT, Gajhede M (1998) Biochemistry 37:8054-8060.
33. Holzbaur IE, English AM, Ismail AA (1996) J Am Chem Soc 118:3354-3359.
34. Ingledew WJ, Rich PR (2005) Biochem Soc Trans 33:886-889.
35. Hashimoto S, Takeuchi H (2006) Biochemistry 45:9660-9667.
36. Johnson JB, Lamb DC, Frauenfelder H, Müller JD, McMahon B, Nienhaus GU, Young RD (1996) Biophys J 71:1563-1573.
37. Smulevich G, Paoli M, Burke JF, Sanders SA, Thorneley RN, Smith AT (1994) Biochemistry 33:7398-7407.
38. Rector KD, Kwok AS, Ferrante C, Tokmakoff A, Rella CW, Fayer MD (1997) J Chem Phys 106:10027-10036.
39. Roberts ST, Loparo JJ, Tokmakoff A (2006) J Chem Phys 125:084502.
40. Mukamel S (1995) Principles of Nonlinear Optical Spectroscopy (Oxford Univ Press, New York).
41. Massari AM, Finkelstein IJ, McClain BL, Goj A, Wen X, Bren KL, Loring RF, Fayer MD (2005) J Am Chem Soc 127:14279-14289.
42. Bai YS, Fayer MD (1989) Phys Rev B Condens Matter 39:11066.
43. Schmidt J, Sundlass N, Skinner J (2003) Chem Phys Lett 378:559-566.
44. Asbury JB, Steinel T, Fayer MD (2004) J Luminescence 107:271-286.
45. Zanni MT, Gnanakaran S, Stenger J, Hochstrasser RM (2001) J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 105:6520-6535.
46. Khalil M, Demirdoven N, Tokmakoff A (2003) Phys Rev Lett 90:047401-047404.