CO as a vibrational probe of heme protein active sites

Journal of Inorganic Biochemistry

Volumn 99, Issue 1, 2005, Pages 34-44

  Spiro, Thomas G ^a   Wasbotten, Ingar H ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

Carbon monoxide; Heme; Protein; Raman; Vibration

Indexed keywords

CARBON MONOXIDE; CYTOCHROME C OXIDASE; HEMOPROTEIN;

CORRELATION ANALYSIS; ENZYME ACTIVE SITE; MOLECULAR PROBE; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; RAMAN SPECTROMETRY; REVIEW; STEREOCHEMISTRY; STRUCTURE ANALYSIS; VIBRATION;

EID: 10444269414     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2004.09.026     Document Type: Article

References (99)

1. E.S. Park, S.S. Andrews, R.B. Hu, and S.G. Boxer J. Phys. Chem. B 103 1999 9813 9817
2. T.S. Li, M.L. Quillin, G.N. Phillips, and J.S. Olson Biochemistry 33 1994 1433 1446
3. D. Ivanov, J.T. Sage, M. Keim, J.R. Powell, S.A. Asher, and P.M. Champion J. Am. Chem. Soc. 116 1994 4139 4140
4. P. Ormos, D. Braunstein, H. Frauenfelder, M.K. Hong, S.L. Lin, T.B. Sauke, and R.D. Young Proc. Natl. Acad. Sci. USA 85 1988 8492 8496
5. J.N. Moore, P.A. Hansen, and R.M. Hochstrasser Proc. Natl. Acad. Sci. USA 85 1988 5062 5066
6. M. Lim, T.A. Jackson, and P.A. Anfinrud Science 269 1995 962 966
7. T.G. Spiro, and P.M. Kozlowski Acc. Chem. Res. 34 2001 137 144
8. T.G. Spiro, and P.M. Kozlowski J. Am. Chem. Soc. 120 1998 4524 4525
9. P.M. Kozlowski, K.M. Vogel, M.Z. Zgierski, and T.G. Spiro J. Porphy. Phthal. 5 2001 312 322
10. X.Y. Li, and T.G. Spiro J. Am. Chem. Soc. 110 1988 6024 6033
11. K.M. Vogel, P.M. Kozlowski, M.Z. Zgierski, and T.G. Spiro Inorg. Chim. Acta 297 2000 11 17
12. E.A. Kerr, and N.T. Yu T.G. Spiro Biological Applications of Raman Spectroscopy vol. 3 1988 Wiley-Interscience New York 39 95
13. A. Ghosh, and D.F. Bocian J. Phys. Chem. 100 1996 6363 6367
14. J.R. Kincaid K.M. Kadish K.M. Smith R. Guilard The Porphyrin Handbook vol. 7 2000 Academic Press San Diego 227 291
15. G.B. Ray, X.Y. Li, J.A. Ibers, J.L. Sessler, and T.G. Spiro J. Am. Chem. Soc. 116 1994 162 176
16. T. Uno, Y. Nishimura, M. Tsuboi, R. Makino, T. Iizuka, and Y. Ishimura J. Biol. Chem. 262 1987 4549 4556
17. K.M. Vogel, P.M. Kozlowski, M.Z. Zgierski, and T.G. Spiro J. Am. Chem. Soc. 121 1999 9915 9921
18. T.K. Das, M. Couture, Y. Ouellet, M. Guertin, and D.L. Rousseau Proc. Natl. Acad. Sci. USA 98 2001 479 484
19. T.J. Deng, I.D.G. Macdonald, M.C. Simianu, M. Sykora, J.R. Kincaid, and S.G. Sligar J. Am. Chem. Soc. 123 2001 269 278
20. B. Kushkuley, and S.S. Stavrov Biochim. Biophys. Acta - Protein Struct. Mol. Enzymol. 1341 1997 238 250
21. M. Tsubaki, and Y. Ichikawa Biochim. Biophys. Acta 827 1985 268 274
22. K.M. Vogel, T.G. Spiro, D. Shelver, M.V. Thorsteinsson, and G.P. Roberts Biochemistry 38 1999 2679 2687
23. M. Unno, J.F. Christian, J.S. Olson, J.T. Sage, and P.M. Champion J. Am. Chem. Soc. 120 1998 2670 2671
24. J. Ramsden, and T.G. Spiro Biochemistry 28 1989 3125 3128
25. L. Zhu, J.T. Sage, A.A. Rigos, D. Morikis, and P.M. Champion J. Mol. Biol. 224 1992 207 215
26. M.L. Quillin, R.E. Brantley, K.A. Johnson, J.S. Olson, and G.N. Phillips Faseb J. 6 1992 A466 A466
27. E.A. Kerr, N.T. Yu, D.E. Bartnicki, and H. Mizukami J. Biol. Chem. 260 1985 8360 8365
28. S. Balasubramanian, D.G. Lambright, M.C. Marden, and S.G. Boxer Biochemistry 32 1993 2202 2212
29. D. Biram, C.J. Garratt, and R.E. Hester R.E. Hester R.B. Girling Spectroscopy of Biological Molecules 1991 Royal Society of Chemistry Cambridge, UK 433 434
30. A.D. Cameron, S.J. Smerdon, A.J. Wilkinson, J. Habash, J.R. Helliwell, T.S. Li, and J.S. Olson Biochemistry 32 1993 13061 13070
31. M. Tsubaki, R.B. Srivastava, and N.T. Yu Biochemistry 21 1982 1132 1140
32. W.H. Fuchsman, and C.A. Appleby Biochemistry 18 1979 1309 1321
33. C.L. Anderton, R.E. Hester, and J.N. Moore Biochim. Biophys. Acta - Protein Struct. Mol. Enzymol. 1338 1997 107 120
34. S. Han, D.L. Rousseau, G. Giacometti, and M. Brunori Proc. Natl. Acad. Sci. USA 87 1990 205 209
35. J.H. Ling, T.S. Li, J.S. Olson, and D.F. Bocian Biochim. Biophys. Acta - Bioenergetics 1188 1994 417 421
36. X. Zhao, K. Vyas, B.D. Nguyen, K. Rajarathnam, G.N. Lamar, T.S. Li, G.N. Phillips, R.F. Eich, J.S. Olson, J.S. Ling, and D.F. Bocian J. Biol. Chem. 270 1995 20763 20774
37. D. Morikis, P.M. Champion, B.A. Springer, and S.G. Sligar Biochemistry 28 1989 4791 4800
38. G.N. Phillips, M.L. Teodoro, T. Li, B. Smith, and J.S. Olson J. Phys. Chem. B 103 1999 8817 8829
39. T.K. Das, J.M. Friedman, A.P. Kloek, D.E. Goldberg, and D.L. Rousseau Biochemistry 39 2000 837 842
40. F. Tani, M. Matsu-ura, K. Ariyama, T. Setoyama, T. Shimada, S. Kobayashi, T. Hayashi, T. Matsuo, Y. Hisaeda, and Y. Naruta Chem. - Eur. J. 9 2003 862 870
41. J.W. Denninger, J.P.M. Schelvis, P.E. Brandish, Y. Zhao, G.T. Babcock, and M.A. Marletta Biochemistry 39 2000 4191 4198
42. D.S. Karow, D.H. Pan, R. Tran, P. Pellicena, A. Presley, R.A. Mathies, and M.A. Marletta Biochemistry 43 2004 10203 10211
43. B. Kushkuley, and S.S. Stavrov Biophys. J. 70 1996 1214 1229
44. B. Kushkuley, and S.S. Stavrov Biophys. J. 72 1997 899 912
45. S. Franzen J. Am. Chem. Soc. 124 2002 13271 13281
46. G.S. Kachalova, A.N. Popov, and H.D. Bartunik Science 284 1999 473 476
47. J. Vojtechovsky, K. Chu, J. Berendzen, R.M. Sweet, and I. Schlichting Biophys. J. 77 1999 2153 2174
48. M. Sono, M.P. Roach, E.D. Coulter, and J.H. Dawson Chem. Rev. 96 1996 2841 2887
49. S. Yoshioka, S. Takahashi, K. Ishimori, and I. Morishima J. Inorg. Biochem. 81 2000 141 151
50. C. Jung, G.H.B. Hoa, K.L. Schroder, M. Simon, and J.P. Doucet Biochemistry 31 1992 12855 12862
51. O. Bangcharoenpaurpong, Resonance Raman studies of myoglobin, cytochromes P450 and chloroperoxidase, Ph.D. Dissertation, Northeastern University, Boston, MA, 1987
52. T. Uno, Y. Nishimura, R. Makino, T. Iizuka, Y. Ishimura, and M. Tsuboi J. Biol. Chem. 260 1985 2023 2026
53. A.V. Wells, P.S. Li, P.M. Champion, S.A. Martinis, and S.G. Sligar Biochemistry 31 1992 4384 4393
54. S.Z. Hu, and J.R. Kincaid J. Am. Chem. Soc. 113 1991 2843 2850
55. S.Z. Hu, and J.R. Kincaid J. Biol. Chem. 268 1993 6189 6193
56. D.H. O'keefe, R.E. Ebel, J.A. Peterson, J.C. Maxwell, and W.S. Caughey Biochemistry 17 1978 5845 5852
57. M. Imai, H. Shimada, Y. Watanabe, Y. Matsushimahibiya, R. Makino, H. Koga, T. Horiuchi, and Y. Ishimura Proc. Natl. Acad. Sci. USA 86 1989 7823 7827
58. S.A. Martinis, W.M. Atkins, P.S. Stayton, and S.G. Sligar J. Am. Chem. Soc. 111 1989 9252 9253
59. J. Wang, D.J. Stuehr, and D.L. Rousseau Biochemistry 36 1997 4595 4606
60. J.L. Wang, D.J. Stuehr, M. Ikedasaito, and D.L. Rousseau J. Biol. Chem. 268 1993 22255 22258
61. B. Fan, J. Wang, D.J. Stuehr, and D.L. Rousseau Biochemistry 36 1997 12660 12665
62. O.W. Griffith, and D.J. Stuehr Ann. Rev. Physiol. 57 1995 707 736
63. I. Schlichting, C. Jung, and H. Schulze Febs Lett. 415 1997 253 257
64. B.R. Crane, A.S. Arvai, D.K. Ghosh, C.Q. Wu, E.D. Getzoff, D.J. Stuehr, and J.A. Tainer Science 279 1998 2121 2126
65. T.O. Fischmann, A. Hruza, X.D. Niu, J.D. Fossetta, C.A. Lunn, E. Dolphin, A.J. Prongay, P. Reichert, D.J. Lundell, S.K. Narula, and P.C. Weber Nat. Struct. Biol. 6 1999 233 242
66. C.S. Raman, H.Y. Li, P. Martasek, V. Kral, B.S.S. Masters, and T.L. Poulos Cell 95 1998 939 950
67. M. Couture, S. Adak, D.J. Stuehr, and D.L. Rousseau J. Biol. Chem. 276 2001 38280 38288
68. M. Sundaramoorthy, J. Terner, and T.L. Poulos Structure 3 1995 1367 1377
69. G. Smulevich, J.M. Mauro, L.A. Fishel, A.M. English, J. Kraut, and T.G. Spiro Biochemistry 27 1988 5477 5485
70. T. Kitagawa, K. Nagai, and M. Tsubaki Febs Lett. 104 1979 376 378
71. G. Smulevich, R. Evangelistakirkup, A. English, and T.G. Spiro Biochemistry 25 1986 4426 4430
72. G. Smulevich, J.M. Mauro, L.A. Fishel, A.M. English, J. Kraut, and T.G. Spiro Biochemistry 27 1988 5486 5492
73. R. Evangelistakirkup, G. Smulevich, and T.G. Spiro Biochemistry 25 1986 4420 4425
74. S. Franzen J. Am. Chem. Soc. 123 2001 12578 12589
75. B.C. Finzel, T.L. Poulos, and J. Kraut J. Biol. Chem. 259 1984 13027 13036
76. S.L. Edwards, and T.L. Poulos J. Biol. Chem. 265 1990 2588 2595
77. A. Feis, J.N. Rodriguez-Lopez, R.N.F. Thorneley, and G. Smulevich Biochemistry 37 1998 13575 13581
78. G. Smulevich, M.A. Miller, J. Kraut, and T.G. Spiro Biochemistry 30 1991 9546 9558
79. P.A. Mabrouk, and T.G. Spiro J. Am. Chem. Soc. 120 1998 10303 10309
80. A. Feis, E. Santoni, F. Neri, C. Ciaccio, G. De Sanctis, M. Coletta, K.G. Welinder, and G. Smulevich Biochemistry 41 2002 13264 13273
81. H.A. Heering, M.A.K. Jansen, R.N.F. Thorneley, and G. Smulevich Biochemistry 40 2001 10360 10370
82. H.A. Heering, A.T. Smith, and G. Smulevich Biochem. J. 363 2002 571 579
83. D. Shelver, R.L. Kerby, Y.P. He, and G.P. Roberts Proc. Natl. Acad. Sci. USA 94 1997 11216 11220
84. W.N. Lanzilotta, D.J. Schuller, M.V. Thorsteinsson, R.L. Kerby, G.P. Roberts, and T.L. Poulos Nat. Struct. Biol. 7 2000 876 880
85. K. Yamamoto, H. Ishikawa, S. Takahashi, K. Ishimori, I. Morishima, H. Nakajima, and S. Aono J. Biol. Chem. 276 2001 11473 11476
86. J.M. Passner, S.C. Schultz, and T.A. Steitz J. Mol. Biol. 304 2000 847 859
87. C.M. Coyle, M. Puranik, H. Youn, S.B. Nielsen, R.D. Williams, R.L. Kerby, G.P. Roberts, and T.G. Spiro J. Biol. Chem. 278 2003 35384 35393
88. T. Uchida, H. Ishikawa, K. Ishimori, I. Morishima, H. Nakajima, S. Aono, Y. Mizutani, and T. Kitagawa Biochemistry 39 2000 12747 12752
89. K. Kim, J. Fettinger, J.L. Sessler, M. Cyr, J. Hugdahl, J.P. Collman, and J.A. Ibers J. Am. Chem. Soc. 111 1989 403 405
90. K. Kim, and J.A. Ibers J. Am. Chem. Soc. 113 1991 6077 6081
91. C. Slebodnick, J.C. Fettinger, H.B. Peterson, and J.A. Ibers J. Am. Chem. Soc. 118 1996 3216 3224
92. J.L. Wang, S. Takahashi, J.P. Hosler, D.M. Mitchell, S. Ferguson-Miller, R.B. Gennis, and D.L. Rousseau Biochemistry 34 1995 9819 9825
93. T.K. Das, F.L. Tomson, R.B. Gennis, M. Gordon, and D.L. Rousseau Biophys. J. 80 2001 2039 2045
94. R.B. Dyer, K.A. Peterson, P.O. Stoutland, and W.H. Woodruff J. Am. Chem. Soc. 113 1991 6276 6277
95. L. Powers, B. Chance, Y. Ching, and P. Angiolillo Biophys. J. 34 1981 465 498
96. A.J. Thomson, C. Greenwood, P.M.A. Gadsby, J. Peterson, D.G. Eglinton, B.C. Hill, and P. Nicholls J. Inorg. Biochem. 23 1985 187 197
97. R.A. Scott Ann. Rev. Biophys. Biophys. Chem. 18 1989 137 158
98. P.V. Argade, Y.C. Ching, and D.L. Rousseau Science 225 1984 329 331
99. D.L. Rousseau, Y.C. Ching, and J.L. Wang J. Bioenerg. Biomem. 25 1993 165 176